Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00870 ATGACGTCTGGTGCGAGGATGCCGAGTTGGAAGGAGAGGGAGAACAATAAGAGGAGGGAGAGGAGGAGGAGAGCGATCGCAGCGAAGATTTTCTCGGGTTTGAGAATGTACGGAAATTACAAGCTTCCTAAGCACTGCGATAACAATGAAGTTCTTAAAGCTCTCTGCAACGAAGCTGGATGGACCGTCGAAGAAGATGGTACGACCTACAGAAAGCTAGAAGTTTATTGTTTTCAATATATATATATATATATATATATATATATATATCCATTGACTAATTACATATATTTTATAAGTAAATTAGGCTGCAGACCAGTAGACATGGACATCACAGGTGGGTCTGCTTCTGCAAGTCCTTCCTCAACATACTGGCCGAGCCAATGTGCATCGAATGATCCAAGTCCTCCATCTTCCTTTCCACCAAGTCCAAGTTCATCTCATTACACTGCAAAAGTCAATGGAATTCGTGATGCAAATTCCCTCGTCCCATGGCTGATAAACCTCTCACCAGCCTCATTCTCATCCTCGTCTAAGACTCACCATCTTTATATCTCTAGTGGCTCCATTAGTGCCCCAGTCACCCCTCCTTTGAGCTCTCCCACAGCTCGATCTCCTAGAATGAGAAATGGATGCCACGATCCTAAAGCTGGTGCTACCTGCGGTGTAGAACAATTTTCTTACATGCCTTCGTCTACCCCGCCAAGTCCTGGCAGACCAACTCTCACCAATTCGCAATGGCTAGCTGGTGTTCAAATTCCTCAAAGTGGGCCATGCTCTCCCACATTTAGCTTTGTTTCTAGAAACCCATTTGGATTTGGAGAGGAGGCATTATCAGGTGGAGGGTCGAGAATGTGGACCCCAGGTCAAAGTGGGGCATGCTCTCCTGCTGTTGCTTCTGGAGTTGATCAAACATCCGATATTCCGCTGTCAGATGGAATGGCAGCTGAGTTTGCATTTGGAAGCAACACAACTGGGTTGGTGAAACCTTGGGAAGGAGAGAGAATTCATGAGGAATGTGTCTCGGATGATCTTGAACTCACTCTTGGAAACTCAAAAATCAGGTTAGTTTAA 1074 45.34 MTSGARMPSWKERENNKRRERRRRAIAAKIFSGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEEDGTTYRKLEVYCFQYIYIYIYIYIYPLTNYIYFISKLGCRPVDMDITGGSASASPSSTYWPSQCASNDPSPPSSFPPSPSSSHYTAKVNGIRDANSLVPWLINLSPASFSSSSKTHHLYISSGSISAPVTPPLSSPTARSPRMRNGCHDPKAGATCGVEQFSYMPSSTPPSPGRPTLTNSQWLAGVQIPQSGPCSPTFSFVSRNPFGFGEEALSGGGSRMWTPGQSGACSPAVASGVDQTSDIPLSDGMAAEFAFGSNTTGLVKPWEGERIHEECVSDDLELTLGNSKIRLV 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17030855 17033555 + BLOR00870 Blo01g00870 55310

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00870 357 Pfam BES1/BZR1 plant transcription factor, N-terminal 4 170 IPR008540 -
Blo01g00870 357 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 103 355 IPR033264 GO:0003700|GO:0006351|GO:0009742
Blo01g00870 357 MobiDBLite consensus disorder prediction 1 20 - -
Blo01g00870 357 PANTHER BES1/BZR1 HOMOLOG PROTEIN 4 103 355 - -
Blo01g00870 357 PANTHER BES1/BZR1 HOMOLOG PROTEIN 4 1 72 - -
Blo01g00870 357 MobiDBLite consensus disorder prediction 125 146 - -
Blo01g00870 357 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 72 IPR033264 GO:0003700|GO:0006351|GO:0009742
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00870 - - - pvy:116128228 455.292
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g00870 Blo11g00263 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00870 Blo-Chr1:17030855 Blo10g00726 Blo-Chr10:22920767 8.42E-109 dispersed
Blo07g00989 Blo-Chr7:29408788 Blo01g00870 Blo-Chr1:17030855 4.64E-25 transposed
Blo01g00870 Blo-Chr1:17030855 Blo11g00263 Blo-Chr11:2124865 2.51E-155 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g261 Blo01g00870 Blo11g00263 . . . . Bma14g00977 . Cmo13g00609 Cmo18g00412 . . . . . Cpe09g00790 . . . . . . . . . . . . . . . . . Cone6ag0940 Cone9ag0944 . . Chy12g00053 . . . . Bda07g00961 . . . . Sed08g2730 . . Cma13g00580 Cma18g00433 Car13g00463 Car18g00409 . Cpe20g00481 Bhi08g02145 Tan05g2533 Cmetu12g0459 Lac10g0987 Hepe07g1834 . . Cla03g00693 Cam03g0700 Cec03g0673 Cco03g0709 Clacu03g0742 Cmu03g1334 Cre03g0981 Lsi02g00836 Csa01g02293 . Cme12g01261
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo01g01552 . 122 407 BZR Transcription Factor Family AT1G75080 66.2 4.0e-90 328.6
Blo06g00124 . 28 307 BZR Transcription Factor Family AT1G75080 55.1 6.2e-75 278.1
Blo01g01552 . 122 405 BZR Transcription Factor Family AT1G19350 64.9 1.1e-90 330.5
Blo06g00124 . 28 304 BZR Transcription Factor Family AT1G19350 57.8 5.3e-74 275.0
Blo06g00124 . 2 301 BZR Transcription Factor Family AT3G50750 56.5 3.3e-74 275.4
Blo01g01552 . 90 404 BZR Transcription Factor Family AT3G50750 50.5 2.1e-60 229.6
Blo11g00263 BCT 112 363 BZR Transcription Factor Family AT4G18890 55.6 5.3e-56 214.5
Blo07g00988 . 76 286 BZR Transcription Factor Family AT4G18890 50.5 7.9e-44 174.1
Blo10g00726 . 173 377 BZR Transcription Factor Family AT4G18890 52.6 1.9e-42 169.5
Blo11g00263 BCT 1 363 BZR Transcription Factor Family AT1G78700 62.1 3.4e-102 368.6
Blo01g00870 BCT 1 355 BZR Transcription Factor Family AT1G78700 55.7 3.9e-98 355.1
Blo10g00726 . 1 377 BZR Transcription Factor Family AT1G78700 60.4 6.6e-98 354.4
Blo07g00988 . 28 286 BZR Transcription Factor Family AT1G78700 60.8 2.3e-66 249.6
Blo06g00124 . 28 201 BZR Transcription Factor Family AT4G36780 74.6 1.7e-59 226.5
Blo01g01552 . 122 301 BZR Transcription Factor Family AT4G36780 57.0 5.7e-39 158.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000940 3 4 6 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 6 3 3 85
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11886 PF05687 BES1_N 4.80E-54 No_clan Blo TF