Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00879 ATGGGGTTTCGAGGTAGAGAAATGCGTACGCCAACTGGTTCTTCTTCAGGTGCTAGTAACATGAGGGCTTACAACAACAACGCGACTCCTATTACCGACAAAAACAAAGCGATCGCTCAGTATAATGCTGACGCTGGGCTTTTGGCTGAGTTTGAGCAGTCTGCTGAATCTGGTAAGTCTTTTAATTACTCGAGATCAGTTTTACATTGTCTTGAATCAGTGCCTGAAGAACAAATTACTGCTTATTTGTCGAGAATCCAAAGGGGTGGTCTGATTCAGCCCTTTGGTTGCATGATCGCTGTGGAAGAAAGCAGTTTTAAAATGATCAGTTACAGTGAGAACTGCTCTGATCTATTGGGTTTAAAGTATCAGTCAGAGTTAACACAGAAAAAAAGTCTGATTGGAATTGATGTTAGAACACTTTTTACTCCTTCATCGGCTACATCTTTAGCGAAAGCTGCTGCATTCAGGGAGATTTCACTCTTGAACCCTGTATGGGTTTATTCTAGGACAACCCAGAAGCCATTTTATGCGATATTGCATAGAATTGATGTGGGGATAGTGATCGATTTGGAGCCTGCAAGGTCGAGCGATCCTGCATTATCACTTGCGGGTGCAGTTCAGTCTCAGAAACTAGCCGTTCGTGCAATTTCTAGACTGCAATCTCTCCATGGAGGTGATATTGGTGCTTTATGTGACACGATTGTGGAAGACGTTCAGAAGCTTACGGGATATGATAGGGTCATGGTTTACAAATTCCATGACGATGATCATGGTGAGGTTGTTTCAGAGATTAGAAGGTCAGACTTAGAGCCTTACCTTGGTTTGCATTATCCTGCCACAGACATCCCCCAAGCTGCCCGTTTTCTGCTCAAGCAGAATCGAATTCGGATGATCTGTGATTGCCATGCAAAACCGGTAAAGATCATTCAAAGTGAAGATCTGAAGCAGTCTCTATGCTTGGTCAATTCAACTCTTCGATCACCTCATGGCTGCCATACTCAATATATGGCCAACATGGGCTCTATCGCCTCACTAGTAATGGCAGTCATCATAAATAGTAACAAGGGGATGACAAAGCTTTGGGGACTAGTTGTGTGTCACCACACCTCACCCCGATACGTCCCTTTCCCTCTTCGTTATGCTTGTGAGTTTCTCATGCAGGCATTTGGGCTGCAGCTTTACATGGAGCTTCAATTGGCATTGCAGTTGATGGAAAAGAAAATTCTCAAAACTCAAACCTTACTCTGCGATATGCTCCTTCGAGATGCACCTTATAGTCTAATGACTCAATCTCCAAGCATTGTGGATCTTGTGAAATGTGATGGGGCTGCATTGTACTACAGCGGGACTTGTTGGCTTCTGGGTGTGACACCATCTGAATCACAAGTTATAGATATTGCAGAGTGGCTTCTTAGTAAGCATGGGGATTCTAGTGGGTTGAGCACGGATAGTTTAGCCGATGCTGGATATCCAGGTGCAGCTTTGCTGGGTGATGCAGTGTGTGGCATGGCAGCGGCAAGAATCTCATTGAAGGATTTCTTATTCTGGTTCAGATCTCATACGGCCAAGGAAGTCAAGTGGGGAGGAGCAAAACATCATCCAGGAGATAAGGATGATGGTGGAAAAATGCGCCCAAGGTCGTCTTTCAATGCCTTTCTTCAGGTTGTCAAAAGTAGAAGTTTGCCTTGGGAAGTTTCAGAAATTAATGCCGTTCATTCTCTGCAACTTATAATGAGAGACTCATTTCAGGAAATCGGAAACAGCAGTGAAAAAGGTTTTGGTAGTGCCCAGCTGAGTGATTCTAAGATGCAGAGTGTGGATGAACTCAGCTCAGCTGCATGGGAAATAGTTAGATTGATTGAGACAGCTATGGTTCCAATTTTTGGGGTTGATTCGGCTGGGCTAATTAATGGATGGAATGCTAAAATTTCTGAACTGACAGGATTAGAGTCTAGTAAAGCCATGGGAAAATCTTTGGTGGATGATATTGCTCATGAGGATTCACGGCAAGTGGTTCGAAGTCTCATCAGTCGTGCTTTGCAAGGTGAGGAAGAAAGAGATGTTGAGTTGAATCTGAGAAATTTTATGGATGATAAAAGAAACTCCGCCTTGTACATTATGGTCAACTCCTGCACAAGCAGAGACAGCAAGAACAATGTGATTGGAGTTTGCTTCGTGGGTCAAGATATTACATCGGAGAAAGTCATTATGGATAAATTTATTCGACTCGAAGGTGACTACAAAGCTATAATTCAAAGTCTTAACCCTTTGATTCCACCCATATTTGCATCTGATGAGAATGCTTGCTGCTCAGAGTGGAATGCAGCCATGGAAAAACTAACAGGCTGGAAACGAGATGAAGTCATAGGAAAAATGCTGCCCGGGGAAATTTTCGGAACTTTCTGTCAATTGAAAGGCCAAGATACATTGACGAAGTTTATGATTTCACTTTATAAAAGCATTGGTGGTCAAGAAACAGAGGACCTTCCATTTGGATTTTTTGATCGAAAAGGAACATTTGTGAAGGTGTTCTTGACGGCAAACAAGAGGACTGATGGCGATGGAGAGAACATCGGCTGTTTCTGCTTCTTGCAGATTGTTGTGCCGGAAGTATATCAGGCTGCAGAAGAACATGTTGGAGAGAGCTTTCTGCAATTGACGGAGTTGGCATATATTCAACAGGAGGTAAAGAATCCTTTGAATGGCATTAGATTTACTCACAAGCTTCTTGAGAGTAGTTGCCTAACAGAAAATCAGAAACTCTTTCTTAACACTAGTGATGCATGTGAGAGACAGATCATGATGGTCATTGAGGATATGAACCTAAGAAGATTAGAAGGAGGAAGTATGGAGCTAAAGATTGAAGAATTTCTGCTGGGGAATGTTTTGGATGCGATTGTCAGTCAAATCATGATCCTCATGAGGGAGAAGAAGTTACAGCTTTTACATGAAATTCCTGGAGAAATCAAATCACTGACCCTTCACGGCGATCAAATTAAGCTACAGATAGTCTTGTCGGACTTTTTGCTCAATGTAGTGAATTGCGCTCCTTCTCCGGGTGGTTGGGTGGAAATCAACGTCTCAACTGGTTTAATATCAATGGAGGATGACAAAAACATTATCCACTTGCAGTTCAGAATGACACACCCTGGTGAAGGGTTGCCTTCAACTTTGGTCCAAGACATGTTGGAAGGAGGAAATGAGTTTGATTCACACGAAGGTCTTGGACTAAACCACTCGAGAAAACTTCTGAGAAAGATGAATGGTAATGTTCAGTATGTCAGAGAACAAAGTAAATGCTATTTCCTCATTGATCTTGAGCTTAAAATGAAGAAAGATAAACCCGAATTGCCTAAATCCAGAAGGAGCGACTGA 3378 42.6 MGFRGREMRTPTGSSSGASNMRAYNNNATPITDKNKAIAQYNADAGLLAEFEQSAESGKSFNYSRSVLHCLESVPEEQITAYLSRIQRGGLIQPFGCMIAVEESSFKMISYSENCSDLLGLKYQSELTQKKSLIGIDVRTLFTPSSATSLAKAAAFREISLLNPVWVYSRTTQKPFYAILHRIDVGIVIDLEPARSSDPALSLAGAVQSQKLAVRAISRLQSLHGGDIGALCDTIVEDVQKLTGYDRVMVYKFHDDDHGEVVSEIRRSDLEPYLGLHYPATDIPQAARFLLKQNRIRMICDCHAKPVKIIQSEDLKQSLCLVNSTLRSPHGCHTQYMANMGSIASLVMAVIINSNKGMTKLWGLVVCHHTSPRYVPFPLRYACEFLMQAFGLQLYMELQLALQLMEKKILKTQTLLCDMLLRDAPYSLMTQSPSIVDLVKCDGAALYYSGTCWLLGVTPSESQVIDIAEWLLSKHGDSSGLSTDSLADAGYPGAALLGDAVCGMAAARISLKDFLFWFRSHTAKEVKWGGAKHHPGDKDDGGKMRPRSSFNAFLQVVKSRSLPWEVSEINAVHSLQLIMRDSFQEIGNSSEKGFGSAQLSDSKMQSVDELSSAAWEIVRLIETAMVPIFGVDSAGLINGWNAKISELTGLESSKAMGKSLVDDIAHEDSRQVVRSLISRALQGEEERDVELNLRNFMDDKRNSALYIMVNSCTSRDSKNNVIGVCFVGQDITSEKVIMDKFIRLEGDYKAIIQSLNPLIPPIFASDENACCSEWNAAMEKLTGWKRDEVIGKMLPGEIFGTFCQLKGQDTLTKFMISLYKSIGGQETEDLPFGFFDRKGTFVKVFLTANKRTDGDGENIGCFCFLQIVVPEVYQAAEEHVGESFLQLTELAYIQQEVKNPLNGIRFTHKLLESSCLTENQKLFLNTSDACERQIMMVIEDMNLRRLEGGSMELKIEEFLLGNVLDAIVSQIMILMREKKLQLLHEIPGEIKSLTLHGDQIKLQIVLSDFLLNVVNCAPSPGGWVEINVSTGLISMEDDKNIIHLQFRMTHPGEGLPSTLVQDMLEGGNEFDSHEGLGLNHSRKLLRKMNGNVQYVREQSKCYFLIDLELKMKKDKPELPKSRRSD 1125
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 17349254 17353922 + BLOR00879 Blo01g00879 55319
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00879 1125 SMART pas_2 615 682 IPR000014 -
Blo01g00879 1125 SMART pas_2 746 815 IPR000014 -
Blo01g00879 1125 SUPERFAMILY PYP-like sensor domain (PAS domain) 730 865 IPR035965 -
Blo01g00879 1125 ProSitePatterns Phytochrome chromophore attachment site signature. 327 336 IPR013516 -
Blo01g00879 1125 Gene3D - 926 1103 IPR036890 -
Blo01g00879 1125 PANTHER TWO-COMPONENT HISTIDINE KINASE 34 1116 - -
Blo01g00879 1125 SUPERFAMILY GAF domain-like 207 394 - -
Blo01g00879 1125 ProSiteProfiles Histidine kinase domain profile. 892 1111 IPR005467 -
Blo01g00879 1125 SUPERFAMILY GAF domain-like 406 585 - -
Blo01g00879 1125 MobiDBLite consensus disorder prediction 9 26 - -
Blo01g00879 1125 Pfam His Kinase A (phospho-acceptor) domain 890 949 IPR003661 GO:0000155|GO:0007165
Blo01g00879 1125 ProSiteProfiles PAS repeat profile. 613 684 IPR000014 -
Blo01g00879 1125 Pfam GAF domain 227 398 IPR003018 GO:0005515
Blo01g00879 1125 ProSiteProfiles PAC domain profile. 687 743 IPR000700 -
Blo01g00879 1125 SMART HisKA_10 885 949 IPR003661 GO:0000155|GO:0007165
Blo01g00879 1125 MobiDBLite consensus disorder prediction 1 26 - -
Blo01g00879 1125 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 942 1100 IPR036890 -
Blo01g00879 1125 SUPERFAMILY PYP-like sensor domain (PAS domain) 619 727 IPR035965 -
Blo01g00879 1125 ProSiteProfiles PAS repeat profile. 747 799 IPR000014 -
Blo01g00879 1125 CDD PAS 626 731 IPR000014 -
Blo01g00879 1125 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 227 388 IPR016132 -
Blo01g00879 1125 CDD PAS 758 866 IPR000014 -
Blo01g00879 1125 Gene3D PAS domain 760 870 - -
Blo01g00879 1125 Gene3D - 403 576 IPR043150 -
Blo01g00879 1125 PRINTS Phytochrome signature 142 164 IPR001294 GO:0006355|GO:0009584
Blo01g00879 1125 PRINTS Phytochrome signature 242 261 IPR001294 GO:0006355|GO:0009584
Blo01g00879 1125 PRINTS Phytochrome signature 709 726 IPR001294 GO:0006355|GO:0009584
Blo01g00879 1125 PRINTS Phytochrome signature 546 564 IPR001294 GO:0006355|GO:0009584
Blo01g00879 1125 PRINTS Phytochrome signature 428 448 IPR001294 GO:0006355|GO:0009584
Blo01g00879 1125 PRINTS Phytochrome signature 616 632 IPR001294 GO:0006355|GO:0009584
Blo01g00879 1125 PRINTS Phytochrome signature 729 749 IPR001294 GO:0006355|GO:0009584
Blo01g00879 1125 PRINTS Phytochrome signature 327 348 IPR001294 GO:0006355|GO:0009584
Blo01g00879 1125 PRINTS Phytochrome signature 513 532 IPR001294 GO:0006355|GO:0009584
Blo01g00879 1125 PRINTS Phytochrome signature 635 650 IPR001294 GO:0006355|GO:0009584
Blo01g00879 1125 SMART HKATPase_4 997 1109 IPR003594 -
Blo01g00879 1125 Pfam Phytochrome region 411 584 IPR013515 GO:0006355|GO:0009584
Blo01g00879 1125 PANTHER PHYTOCHROME E 34 1116 - -
Blo01g00879 1125 CDD HisKA 890 941 IPR003661 GO:0000155|GO:0007165
Blo01g00879 1125 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 997 1104 IPR003594 -
Blo01g00879 1125 Gene3D PAS domain 616 735 - -
Blo01g00879 1125 SMART gaf_1 227 408 IPR003018 GO:0005515
Blo01g00879 1125 Pfam PAS fold 747 866 IPR013767 GO:0006355
Blo01g00879 1125 Pfam PAS fold 617 731 IPR013767 GO:0006355
Blo01g00879 1125 PIRSF Phytochrome_conventional 13 1118 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Blo01g00879 1125 TIGRFAM sensory_box: PAS domain S-box protein 620 735 IPR000014 -
Blo01g00879 1125 Gene3D PAS domain 85 330 - -
Blo01g00879 1125 Pfam PAS fold 81 194 IPR013654 GO:0006355
Blo01g00879 1125 SUPERFAMILY PYP-like sensor domain (PAS domain) 86 198 IPR035965 -
Blo01g00879 1125 Gene3D - 208 559 IPR029016 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00879 Blo-Chr1:17349254 Blo07g00144 Blo-Chr7:1906954 0 dispersed
Blo01g00879 Blo-Chr1:17349254 Blo02g00140 Blo-Chr2:1219131 0 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00879 K12123 - tcc:18596568 1678.3