Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Blo01g00879 | ATGGGGTTTCGAGGTAGAGAAATGCGTACGCCAACTGGTTCTTCTTCAGGTGCTAGTAACATGAGGGCTTACAACAACAACGCGACTCCTATTACCGACAAAAACAAAGCGATCGCTCAGTATAATGCTGACGCTGGGCTTTTGGCTGAGTTTGAGCAGTCTGCTGAATCTGGTAAGTCTTTTAATTACTCGAGATCAGTTTTACATTGTCTTGAATCAGTGCCTGAAGAACAAATTACTGCTTATTTGTCGAGAATCCAAAGGGGTGGTCTGATTCAGCCCTTTGGTTGCATGATCGCTGTGGAAGAAAGCAGTTTTAAAATGATCAGTTACAGTGAGAACTGCTCTGATCTATTGGGTTTAAAGTATCAGTCAGAGTTAACACAGAAAAAAAGTCTGATTGGAATTGATGTTAGAACACTTTTTACTCCTTCATCGGCTACATCTTTAGCGAAAGCTGCTGCATTCAGGGAGATTTCACTCTTGAACCCTGTATGGGTTTATTCTAGGACAACCCAGAAGCCATTTTATGCGATATTGCATAGAATTGATGTGGGGATAGTGATCGATTTGGAGCCTGCAAGGTCGAGCGATCCTGCATTATCACTTGCGGGTGCAGTTCAGTCTCAGAAACTAGCCGTTCGTGCAATTTCTAGACTGCAATCTCTCCATGGAGGTGATATTGGTGCTTTATGTGACACGATTGTGGAAGACGTTCAGAAGCTTACGGGATATGATAGGGTCATGGTTTACAAATTCCATGACGATGATCATGGTGAGGTTGTTTCAGAGATTAGAAGGTCAGACTTAGAGCCTTACCTTGGTTTGCATTATCCTGCCACAGACATCCCCCAAGCTGCCCGTTTTCTGCTCAAGCAGAATCGAATTCGGATGATCTGTGATTGCCATGCAAAACCGGTAAAGATCATTCAAAGTGAAGATCTGAAGCAGTCTCTATGCTTGGTCAATTCAACTCTTCGATCACCTCATGGCTGCCATACTCAATATATGGCCAACATGGGCTCTATCGCCTCACTAGTAATGGCAGTCATCATAAATAGTAACAAGGGGATGACAAAGCTTTGGGGACTAGTTGTGTGTCACCACACCTCACCCCGATACGTCCCTTTCCCTCTTCGTTATGCTTGTGAGTTTCTCATGCAGGCATTTGGGCTGCAGCTTTACATGGAGCTTCAATTGGCATTGCAGTTGATGGAAAAGAAAATTCTCAAAACTCAAACCTTACTCTGCGATATGCTCCTTCGAGATGCACCTTATAGTCTAATGACTCAATCTCCAAGCATTGTGGATCTTGTGAAATGTGATGGGGCTGCATTGTACTACAGCGGGACTTGTTGGCTTCTGGGTGTGACACCATCTGAATCACAAGTTATAGATATTGCAGAGTGGCTTCTTAGTAAGCATGGGGATTCTAGTGGGTTGAGCACGGATAGTTTAGCCGATGCTGGATATCCAGGTGCAGCTTTGCTGGGTGATGCAGTGTGTGGCATGGCAGCGGCAAGAATCTCATTGAAGGATTTCTTATTCTGGTTCAGATCTCATACGGCCAAGGAAGTCAAGTGGGGAGGAGCAAAACATCATCCAGGAGATAAGGATGATGGTGGAAAAATGCGCCCAAGGTCGTCTTTCAATGCCTTTCTTCAGGTTGTCAAAAGTAGAAGTTTGCCTTGGGAAGTTTCAGAAATTAATGCCGTTCATTCTCTGCAACTTATAATGAGAGACTCATTTCAGGAAATCGGAAACAGCAGTGAAAAAGGTTTTGGTAGTGCCCAGCTGAGTGATTCTAAGATGCAGAGTGTGGATGAACTCAGCTCAGCTGCATGGGAAATAGTTAGATTGATTGAGACAGCTATGGTTCCAATTTTTGGGGTTGATTCGGCTGGGCTAATTAATGGATGGAATGCTAAAATTTCTGAACTGACAGGATTAGAGTCTAGTAAAGCCATGGGAAAATCTTTGGTGGATGATATTGCTCATGAGGATTCACGGCAAGTGGTTCGAAGTCTCATCAGTCGTGCTTTGCAAGGTGAGGAAGAAAGAGATGTTGAGTTGAATCTGAGAAATTTTATGGATGATAAAAGAAACTCCGCCTTGTACATTATGGTCAACTCCTGCACAAGCAGAGACAGCAAGAACAATGTGATTGGAGTTTGCTTCGTGGGTCAAGATATTACATCGGAGAAAGTCATTATGGATAAATTTATTCGACTCGAAGGTGACTACAAAGCTATAATTCAAAGTCTTAACCCTTTGATTCCACCCATATTTGCATCTGATGAGAATGCTTGCTGCTCAGAGTGGAATGCAGCCATGGAAAAACTAACAGGCTGGAAACGAGATGAAGTCATAGGAAAAATGCTGCCCGGGGAAATTTTCGGAACTTTCTGTCAATTGAAAGGCCAAGATACATTGACGAAGTTTATGATTTCACTTTATAAAAGCATTGGTGGTCAAGAAACAGAGGACCTTCCATTTGGATTTTTTGATCGAAAAGGAACATTTGTGAAGGTGTTCTTGACGGCAAACAAGAGGACTGATGGCGATGGAGAGAACATCGGCTGTTTCTGCTTCTTGCAGATTGTTGTGCCGGAAGTATATCAGGCTGCAGAAGAACATGTTGGAGAGAGCTTTCTGCAATTGACGGAGTTGGCATATATTCAACAGGAGGTAAAGAATCCTTTGAATGGCATTAGATTTACTCACAAGCTTCTTGAGAGTAGTTGCCTAACAGAAAATCAGAAACTCTTTCTTAACACTAGTGATGCATGTGAGAGACAGATCATGATGGTCATTGAGGATATGAACCTAAGAAGATTAGAAGGAGGAAGTATGGAGCTAAAGATTGAAGAATTTCTGCTGGGGAATGTTTTGGATGCGATTGTCAGTCAAATCATGATCCTCATGAGGGAGAAGAAGTTACAGCTTTTACATGAAATTCCTGGAGAAATCAAATCACTGACCCTTCACGGCGATCAAATTAAGCTACAGATAGTCTTGTCGGACTTTTTGCTCAATGTAGTGAATTGCGCTCCTTCTCCGGGTGGTTGGGTGGAAATCAACGTCTCAACTGGTTTAATATCAATGGAGGATGACAAAAACATTATCCACTTGCAGTTCAGAATGACACACCCTGGTGAAGGGTTGCCTTCAACTTTGGTCCAAGACATGTTGGAAGGAGGAAATGAGTTTGATTCACACGAAGGTCTTGGACTAAACCACTCGAGAAAACTTCTGAGAAAGATGAATGGTAATGTTCAGTATGTCAGAGAACAAAGTAAATGCTATTTCCTCATTGATCTTGAGCTTAAAATGAAGAAAGATAAACCCGAATTGCCTAAATCCAGAAGGAGCGACTGA | 3378 | 42.6 | MGFRGREMRTPTGSSSGASNMRAYNNNATPITDKNKAIAQYNADAGLLAEFEQSAESGKSFNYSRSVLHCLESVPEEQITAYLSRIQRGGLIQPFGCMIAVEESSFKMISYSENCSDLLGLKYQSELTQKKSLIGIDVRTLFTPSSATSLAKAAAFREISLLNPVWVYSRTTQKPFYAILHRIDVGIVIDLEPARSSDPALSLAGAVQSQKLAVRAISRLQSLHGGDIGALCDTIVEDVQKLTGYDRVMVYKFHDDDHGEVVSEIRRSDLEPYLGLHYPATDIPQAARFLLKQNRIRMICDCHAKPVKIIQSEDLKQSLCLVNSTLRSPHGCHTQYMANMGSIASLVMAVIINSNKGMTKLWGLVVCHHTSPRYVPFPLRYACEFLMQAFGLQLYMELQLALQLMEKKILKTQTLLCDMLLRDAPYSLMTQSPSIVDLVKCDGAALYYSGTCWLLGVTPSESQVIDIAEWLLSKHGDSSGLSTDSLADAGYPGAALLGDAVCGMAAARISLKDFLFWFRSHTAKEVKWGGAKHHPGDKDDGGKMRPRSSFNAFLQVVKSRSLPWEVSEINAVHSLQLIMRDSFQEIGNSSEKGFGSAQLSDSKMQSVDELSSAAWEIVRLIETAMVPIFGVDSAGLINGWNAKISELTGLESSKAMGKSLVDDIAHEDSRQVVRSLISRALQGEEERDVELNLRNFMDDKRNSALYIMVNSCTSRDSKNNVIGVCFVGQDITSEKVIMDKFIRLEGDYKAIIQSLNPLIPPIFASDENACCSEWNAAMEKLTGWKRDEVIGKMLPGEIFGTFCQLKGQDTLTKFMISLYKSIGGQETEDLPFGFFDRKGTFVKVFLTANKRTDGDGENIGCFCFLQIVVPEVYQAAEEHVGESFLQLTELAYIQQEVKNPLNGIRFTHKLLESSCLTENQKLFLNTSDACERQIMMVIEDMNLRRLEGGSMELKIEEFLLGNVLDAIVSQIMILMREKKLQLLHEIPGEIKSLTLHGDQIKLQIVLSDFLLNVVNCAPSPGGWVEINVSTGLISMEDDKNIIHLQFRMTHPGEGLPSTLVQDMLEGGNEFDSHEGLGLNHSRKLLRKMNGNVQYVREQSKCYFLIDLELKMKKDKPELPKSRRSD | 1125 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 17349254 | 17353922 | + | BLOR00879 | Blo01g00879 | 55319 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Blo01g00879 | 1125 | SMART | pas_2 | 615 | 682 | IPR000014 | - | |
Blo01g00879 | 1125 | SMART | pas_2 | 746 | 815 | IPR000014 | - | |
Blo01g00879 | 1125 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 730 | 865 | IPR035965 | - | |
Blo01g00879 | 1125 | ProSitePatterns | Phytochrome chromophore attachment site signature. | 327 | 336 | IPR013516 | - | |
Blo01g00879 | 1125 | Gene3D | - | 926 | 1103 | IPR036890 | - | |
Blo01g00879 | 1125 | PANTHER | TWO-COMPONENT HISTIDINE KINASE | 34 | 1116 | - | - | |
Blo01g00879 | 1125 | SUPERFAMILY | GAF domain-like | 207 | 394 | - | - | |
Blo01g00879 | 1125 | ProSiteProfiles | Histidine kinase domain profile. | 892 | 1111 | IPR005467 | - | |
Blo01g00879 | 1125 | SUPERFAMILY | GAF domain-like | 406 | 585 | - | - | |
Blo01g00879 | 1125 | MobiDBLite | consensus disorder prediction | 9 | 26 | - | - | |
Blo01g00879 | 1125 | Pfam | His Kinase A (phospho-acceptor) domain | 890 | 949 | IPR003661 | GO:0000155|GO:0007165 | |
Blo01g00879 | 1125 | ProSiteProfiles | PAS repeat profile. | 613 | 684 | IPR000014 | - | |
Blo01g00879 | 1125 | Pfam | GAF domain | 227 | 398 | IPR003018 | GO:0005515 | |
Blo01g00879 | 1125 | ProSiteProfiles | PAC domain profile. | 687 | 743 | IPR000700 | - | |
Blo01g00879 | 1125 | SMART | HisKA_10 | 885 | 949 | IPR003661 | GO:0000155|GO:0007165 | |
Blo01g00879 | 1125 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Blo01g00879 | 1125 | SUPERFAMILY | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 942 | 1100 | IPR036890 | - | |
Blo01g00879 | 1125 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 619 | 727 | IPR035965 | - | |
Blo01g00879 | 1125 | ProSiteProfiles | PAS repeat profile. | 747 | 799 | IPR000014 | - | |
Blo01g00879 | 1125 | CDD | PAS | 626 | 731 | IPR000014 | - | |
Blo01g00879 | 1125 | ProSiteProfiles | Phytochrome chromophore attachment site domain profile. | 227 | 388 | IPR016132 | - | |
Blo01g00879 | 1125 | CDD | PAS | 758 | 866 | IPR000014 | - | |
Blo01g00879 | 1125 | Gene3D | PAS domain | 760 | 870 | - | - | |
Blo01g00879 | 1125 | Gene3D | - | 403 | 576 | IPR043150 | - | |
Blo01g00879 | 1125 | PRINTS | Phytochrome signature | 142 | 164 | IPR001294 | GO:0006355|GO:0009584 | |
Blo01g00879 | 1125 | PRINTS | Phytochrome signature | 242 | 261 | IPR001294 | GO:0006355|GO:0009584 | |
Blo01g00879 | 1125 | PRINTS | Phytochrome signature | 709 | 726 | IPR001294 | GO:0006355|GO:0009584 | |
Blo01g00879 | 1125 | PRINTS | Phytochrome signature | 546 | 564 | IPR001294 | GO:0006355|GO:0009584 | |
Blo01g00879 | 1125 | PRINTS | Phytochrome signature | 428 | 448 | IPR001294 | GO:0006355|GO:0009584 | |
Blo01g00879 | 1125 | PRINTS | Phytochrome signature | 616 | 632 | IPR001294 | GO:0006355|GO:0009584 | |
Blo01g00879 | 1125 | PRINTS | Phytochrome signature | 729 | 749 | IPR001294 | GO:0006355|GO:0009584 | |
Blo01g00879 | 1125 | PRINTS | Phytochrome signature | 327 | 348 | IPR001294 | GO:0006355|GO:0009584 | |
Blo01g00879 | 1125 | PRINTS | Phytochrome signature | 513 | 532 | IPR001294 | GO:0006355|GO:0009584 | |
Blo01g00879 | 1125 | PRINTS | Phytochrome signature | 635 | 650 | IPR001294 | GO:0006355|GO:0009584 | |
Blo01g00879 | 1125 | SMART | HKATPase_4 | 997 | 1109 | IPR003594 | - | |
Blo01g00879 | 1125 | Pfam | Phytochrome region | 411 | 584 | IPR013515 | GO:0006355|GO:0009584 | |
Blo01g00879 | 1125 | PANTHER | PHYTOCHROME E | 34 | 1116 | - | - | |
Blo01g00879 | 1125 | CDD | HisKA | 890 | 941 | IPR003661 | GO:0000155|GO:0007165 | |
Blo01g00879 | 1125 | Pfam | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | 997 | 1104 | IPR003594 | - | |
Blo01g00879 | 1125 | Gene3D | PAS domain | 616 | 735 | - | - | |
Blo01g00879 | 1125 | SMART | gaf_1 | 227 | 408 | IPR003018 | GO:0005515 | |
Blo01g00879 | 1125 | Pfam | PAS fold | 747 | 866 | IPR013767 | GO:0006355 | |
Blo01g00879 | 1125 | Pfam | PAS fold | 617 | 731 | IPR013767 | GO:0006355 | |
Blo01g00879 | 1125 | PIRSF | Phytochrome_conventional | 13 | 1118 | IPR012129 | GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803 | |
Blo01g00879 | 1125 | TIGRFAM | sensory_box: PAS domain S-box protein | 620 | 735 | IPR000014 | - | |
Blo01g00879 | 1125 | Gene3D | PAS domain | 85 | 330 | - | - | |
Blo01g00879 | 1125 | Pfam | PAS fold | 81 | 194 | IPR013654 | GO:0006355 | |
Blo01g00879 | 1125 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 86 | 198 | IPR035965 | - | |
Blo01g00879 | 1125 | Gene3D | - | 208 | 559 | IPR029016 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Blo01g00879 | Blo-Chr1:17349254 | Blo07g00144 | Blo-Chr7:1906954 | 0 | dispersed | |
Blo01g00879 | Blo-Chr1:17349254 | Blo02g00140 | Blo-Chr2:1219131 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Blo01g00879 | K12123 | - | tcc:18596568 | 1678.3 |