Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00879 ATGGGGTTTCGAGGTAGAGAAATGCGTACGCCAACTGGTTCTTCTTCAGGTGCTAGTAACATGAGGGCTTACAACAACAACGCGACTCCTATTACCGACAAAAACAAAGCGATCGCTCAGTATAATGCTGACGCTGGGCTTTTGGCTGAGTTTGAGCAGTCTGCTGAATCTGGTAAGTCTTTTAATTACTCGAGATCAGTTTTACATTGTCTTGAATCAGTGCCTGAAGAACAAATTACTGCTTATTTGTCGAGAATCCAAAGGGGTGGTCTGATTCAGCCCTTTGGTTGCATGATCGCTGTGGAAGAAAGCAGTTTTAAAATGATCAGTTACAGTGAGAACTGCTCTGATCTATTGGGTTTAAAGTATCAGTCAGAGTTAACACAGAAAAAAAGTCTGATTGGAATTGATGTTAGAACACTTTTTACTCCTTCATCGGCTACATCTTTAGCGAAAGCTGCTGCATTCAGGGAGATTTCACTCTTGAACCCTGTATGGGTTTATTCTAGGACAACCCAGAAGCCATTTTATGCGATATTGCATAGAATTGATGTGGGGATAGTGATCGATTTGGAGCCTGCAAGGTCGAGCGATCCTGCATTATCACTTGCGGGTGCAGTTCAGTCTCAGAAACTAGCCGTTCGTGCAATTTCTAGACTGCAATCTCTCCATGGAGGTGATATTGGTGCTTTATGTGACACGATTGTGGAAGACGTTCAGAAGCTTACGGGATATGATAGGGTCATGGTTTACAAATTCCATGACGATGATCATGGTGAGGTTGTTTCAGAGATTAGAAGGTCAGACTTAGAGCCTTACCTTGGTTTGCATTATCCTGCCACAGACATCCCCCAAGCTGCCCGTTTTCTGCTCAAGCAGAATCGAATTCGGATGATCTGTGATTGCCATGCAAAACCGGTAAAGATCATTCAAAGTGAAGATCTGAAGCAGTCTCTATGCTTGGTCAATTCAACTCTTCGATCACCTCATGGCTGCCATACTCAATATATGGCCAACATGGGCTCTATCGCCTCACTAGTAATGGCAGTCATCATAAATAGTAACAAGGGGATGACAAAGCTTTGGGGACTAGTTGTGTGTCACCACACCTCACCCCGATACGTCCCTTTCCCTCTTCGTTATGCTTGTGAGTTTCTCATGCAGGCATTTGGGCTGCAGCTTTACATGGAGCTTCAATTGGCATTGCAGTTGATGGAAAAGAAAATTCTCAAAACTCAAACCTTACTCTGCGATATGCTCCTTCGAGATGCACCTTATAGTCTAATGACTCAATCTCCAAGCATTGTGGATCTTGTGAAATGTGATGGGGCTGCATTGTACTACAGCGGGACTTGTTGGCTTCTGGGTGTGACACCATCTGAATCACAAGTTATAGATATTGCAGAGTGGCTTCTTAGTAAGCATGGGGATTCTAGTGGGTTGAGCACGGATAGTTTAGCCGATGCTGGATATCCAGGTGCAGCTTTGCTGGGTGATGCAGTGTGTGGCATGGCAGCGGCAAGAATCTCATTGAAGGATTTCTTATTCTGGTTCAGATCTCATACGGCCAAGGAAGTCAAGTGGGGAGGAGCAAAACATCATCCAGGAGATAAGGATGATGGTGGAAAAATGCGCCCAAGGTCGTCTTTCAATGCCTTTCTTCAGGTTGTCAAAAGTAGAAGTTTGCCTTGGGAAGTTTCAGAAATTAATGCCGTTCATTCTCTGCAACTTATAATGAGAGACTCATTTCAGGAAATCGGAAACAGCAGTGAAAAAGGTTTTGGTAGTGCCCAGCTGAGTGATTCTAAGATGCAGAGTGTGGATGAACTCAGCTCAGCTGCATGGGAAATAGTTAGATTGATTGAGACAGCTATGGTTCCAATTTTTGGGGTTGATTCGGCTGGGCTAATTAATGGATGGAATGCTAAAATTTCTGAACTGACAGGATTAGAGTCTAGTAAAGCCATGGGAAAATCTTTGGTGGATGATATTGCTCATGAGGATTCACGGCAAGTGGTTCGAAGTCTCATCAGTCGTGCTTTGCAAGGTGAGGAAGAAAGAGATGTTGAGTTGAATCTGAGAAATTTTATGGATGATAAAAGAAACTCCGCCTTGTACATTATGGTCAACTCCTGCACAAGCAGAGACAGCAAGAACAATGTGATTGGAGTTTGCTTCGTGGGTCAAGATATTACATCGGAGAAAGTCATTATGGATAAATTTATTCGACTCGAAGGTGACTACAAAGCTATAATTCAAAGTCTTAACCCTTTGATTCCACCCATATTTGCATCTGATGAGAATGCTTGCTGCTCAGAGTGGAATGCAGCCATGGAAAAACTAACAGGCTGGAAACGAGATGAAGTCATAGGAAAAATGCTGCCCGGGGAAATTTTCGGAACTTTCTGTCAATTGAAAGGCCAAGATACATTGACGAAGTTTATGATTTCACTTTATAAAAGCATTGGTGGTCAAGAAACAGAGGACCTTCCATTTGGATTTTTTGATCGAAAAGGAACATTTGTGAAGGTGTTCTTGACGGCAAACAAGAGGACTGATGGCGATGGAGAGAACATCGGCTGTTTCTGCTTCTTGCAGATTGTTGTGCCGGAAGTATATCAGGCTGCAGAAGAACATGTTGGAGAGAGCTTTCTGCAATTGACGGAGTTGGCATATATTCAACAGGAGGTAAAGAATCCTTTGAATGGCATTAGATTTACTCACAAGCTTCTTGAGAGTAGTTGCCTAACAGAAAATCAGAAACTCTTTCTTAACACTAGTGATGCATGTGAGAGACAGATCATGATGGTCATTGAGGATATGAACCTAAGAAGATTAGAAGGAGGAAGTATGGAGCTAAAGATTGAAGAATTTCTGCTGGGGAATGTTTTGGATGCGATTGTCAGTCAAATCATGATCCTCATGAGGGAGAAGAAGTTACAGCTTTTACATGAAATTCCTGGAGAAATCAAATCACTGACCCTTCACGGCGATCAAATTAAGCTACAGATAGTCTTGTCGGACTTTTTGCTCAATGTAGTGAATTGCGCTCCTTCTCCGGGTGGTTGGGTGGAAATCAACGTCTCAACTGGTTTAATATCAATGGAGGATGACAAAAACATTATCCACTTGCAGTTCAGAATGACACACCCTGGTGAAGGGTTGCCTTCAACTTTGGTCCAAGACATGTTGGAAGGAGGAAATGAGTTTGATTCACACGAAGGTCTTGGACTAAACCACTCGAGAAAACTTCTGAGAAAGATGAATGGTAATGTTCAGTATGTCAGAGAACAAAGTAAATGCTATTTCCTCATTGATCTTGAGCTTAAAATGAAGAAAGATAAACCCGAATTGCCTAAATCCAGAAGGAGCGACTGA 3378 42.6 MGFRGREMRTPTGSSSGASNMRAYNNNATPITDKNKAIAQYNADAGLLAEFEQSAESGKSFNYSRSVLHCLESVPEEQITAYLSRIQRGGLIQPFGCMIAVEESSFKMISYSENCSDLLGLKYQSELTQKKSLIGIDVRTLFTPSSATSLAKAAAFREISLLNPVWVYSRTTQKPFYAILHRIDVGIVIDLEPARSSDPALSLAGAVQSQKLAVRAISRLQSLHGGDIGALCDTIVEDVQKLTGYDRVMVYKFHDDDHGEVVSEIRRSDLEPYLGLHYPATDIPQAARFLLKQNRIRMICDCHAKPVKIIQSEDLKQSLCLVNSTLRSPHGCHTQYMANMGSIASLVMAVIINSNKGMTKLWGLVVCHHTSPRYVPFPLRYACEFLMQAFGLQLYMELQLALQLMEKKILKTQTLLCDMLLRDAPYSLMTQSPSIVDLVKCDGAALYYSGTCWLLGVTPSESQVIDIAEWLLSKHGDSSGLSTDSLADAGYPGAALLGDAVCGMAAARISLKDFLFWFRSHTAKEVKWGGAKHHPGDKDDGGKMRPRSSFNAFLQVVKSRSLPWEVSEINAVHSLQLIMRDSFQEIGNSSEKGFGSAQLSDSKMQSVDELSSAAWEIVRLIETAMVPIFGVDSAGLINGWNAKISELTGLESSKAMGKSLVDDIAHEDSRQVVRSLISRALQGEEERDVELNLRNFMDDKRNSALYIMVNSCTSRDSKNNVIGVCFVGQDITSEKVIMDKFIRLEGDYKAIIQSLNPLIPPIFASDENACCSEWNAAMEKLTGWKRDEVIGKMLPGEIFGTFCQLKGQDTLTKFMISLYKSIGGQETEDLPFGFFDRKGTFVKVFLTANKRTDGDGENIGCFCFLQIVVPEVYQAAEEHVGESFLQLTELAYIQQEVKNPLNGIRFTHKLLESSCLTENQKLFLNTSDACERQIMMVIEDMNLRRLEGGSMELKIEEFLLGNVLDAIVSQIMILMREKKLQLLHEIPGEIKSLTLHGDQIKLQIVLSDFLLNVVNCAPSPGGWVEINVSTGLISMEDDKNIIHLQFRMTHPGEGLPSTLVQDMLEGGNEFDSHEGLGLNHSRKLLRKMNGNVQYVREQSKCYFLIDLELKMKKDKPELPKSRRSD 1125
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17349254 17353922 + BLOR00879 Blo01g00879 55319

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00879 1125 SMART pas_2 615 682 IPR000014 -
Blo01g00879 1125 SMART pas_2 746 815 IPR000014 -
Blo01g00879 1125 SUPERFAMILY PYP-like sensor domain (PAS domain) 730 865 IPR035965 -
Blo01g00879 1125 ProSitePatterns Phytochrome chromophore attachment site signature. 327 336 IPR013516 -
Blo01g00879 1125 Gene3D - 926 1103 IPR036890 -
Blo01g00879 1125 PANTHER TWO-COMPONENT HISTIDINE KINASE 34 1116 - -
Blo01g00879 1125 SUPERFAMILY GAF domain-like 207 394 - -
Blo01g00879 1125 ProSiteProfiles Histidine kinase domain profile. 892 1111 IPR005467 -
Blo01g00879 1125 SUPERFAMILY GAF domain-like 406 585 - -
Blo01g00879 1125 MobiDBLite consensus disorder prediction 9 26 - -
Blo01g00879 1125 Pfam His Kinase A (phospho-acceptor) domain 890 949 IPR003661 GO:0000155|GO:0007165
Blo01g00879 1125 ProSiteProfiles PAS repeat profile. 613 684 IPR000014 -
Blo01g00879 1125 Pfam GAF domain 227 398 IPR003018 GO:0005515
Blo01g00879 1125 ProSiteProfiles PAC domain profile. 687 743 IPR000700 -
Blo01g00879 1125 SMART HisKA_10 885 949 IPR003661 GO:0000155|GO:0007165
Blo01g00879 1125 MobiDBLite consensus disorder prediction 1 26 - -
Blo01g00879 1125 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 942 1100 IPR036890 -
Blo01g00879 1125 SUPERFAMILY PYP-like sensor domain (PAS domain) 619 727 IPR035965 -
Blo01g00879 1125 ProSiteProfiles PAS repeat profile. 747 799 IPR000014 -
Blo01g00879 1125 CDD PAS 626 731 IPR000014 -
Blo01g00879 1125 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 227 388 IPR016132 -
Blo01g00879 1125 CDD PAS 758 866 IPR000014 -
Blo01g00879 1125 Gene3D PAS domain 760 870 - -
Blo01g00879 1125 Gene3D - 403 576 IPR043150 -
Blo01g00879 1125 PRINTS Phytochrome signature 142 164 IPR001294 GO:0006355|GO:0009584
Blo01g00879 1125 PRINTS Phytochrome signature 242 261 IPR001294 GO:0006355|GO:0009584
Blo01g00879 1125 PRINTS Phytochrome signature 709 726 IPR001294 GO:0006355|GO:0009584
Blo01g00879 1125 PRINTS Phytochrome signature 546 564 IPR001294 GO:0006355|GO:0009584
Blo01g00879 1125 PRINTS Phytochrome signature 428 448 IPR001294 GO:0006355|GO:0009584
Blo01g00879 1125 PRINTS Phytochrome signature 616 632 IPR001294 GO:0006355|GO:0009584
Blo01g00879 1125 PRINTS Phytochrome signature 729 749 IPR001294 GO:0006355|GO:0009584
Blo01g00879 1125 PRINTS Phytochrome signature 327 348 IPR001294 GO:0006355|GO:0009584
Blo01g00879 1125 PRINTS Phytochrome signature 513 532 IPR001294 GO:0006355|GO:0009584
Blo01g00879 1125 PRINTS Phytochrome signature 635 650 IPR001294 GO:0006355|GO:0009584
Blo01g00879 1125 SMART HKATPase_4 997 1109 IPR003594 -
Blo01g00879 1125 Pfam Phytochrome region 411 584 IPR013515 GO:0006355|GO:0009584
Blo01g00879 1125 PANTHER PHYTOCHROME E 34 1116 - -
Blo01g00879 1125 CDD HisKA 890 941 IPR003661 GO:0000155|GO:0007165
Blo01g00879 1125 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 997 1104 IPR003594 -
Blo01g00879 1125 Gene3D PAS domain 616 735 - -
Blo01g00879 1125 SMART gaf_1 227 408 IPR003018 GO:0005515
Blo01g00879 1125 Pfam PAS fold 747 866 IPR013767 GO:0006355
Blo01g00879 1125 Pfam PAS fold 617 731 IPR013767 GO:0006355
Blo01g00879 1125 PIRSF Phytochrome_conventional 13 1118 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Blo01g00879 1125 TIGRFAM sensory_box: PAS domain S-box protein 620 735 IPR000014 -
Blo01g00879 1125 Gene3D PAS domain 85 330 - -
Blo01g00879 1125 Pfam PAS fold 81 194 IPR013654 GO:0006355
Blo01g00879 1125 SUPERFAMILY PYP-like sensor domain (PAS domain) 86 198 IPR035965 -
Blo01g00879 1125 Gene3D - 208 559 IPR029016 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00879 K12123 PHYE; phytochrome E - tcc:18596568 1678.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00879 Blo-Chr1:17349254 Blo07g00144 Blo-Chr7:1906954 0 dispersed
Blo01g00879 Blo-Chr1:17349254 Blo02g00140 Blo-Chr2:1219131 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo04g00878 BCT 9 1158 Histidine Kinase Gene Family AT2G17820 63.3 0.0e+00 1365.5
Blo16g00087 BCT 35 1178 Histidine Kinase Gene Family AT2G17820 63.7 0.0e+00 1358.2
Blo11g00965 . 17 1036 Histidine Kinase Gene Family AT2G01830 69.6 0.0e+00 1333.2
Blo01g00163 . 159 1111 Histidine Kinase Gene Family AT2G01830 52.4 7.3e-271 930.6
Blo12g00277 . 8 927 Histidine Kinase Gene Family AT2G01830 53.8 3.7e-267 918.3
Blo02g00136 . 308 1182 Histidine Kinase Gene Family AT2G01830 50.4 1.5e-236 816.6
Blo01g01429 . 1 940 Histidine Kinase Gene Family AT5G10720 59.1 1.0e-292 1003.0
Blo18g00692 . 112 1231 Histidine Kinase Gene Family AT1G09570 75.9 0.0e+00 1735.7
Blo07g00144 CCT 699 1790 Histidine Kinase Gene Family AT1G09570 53.7 0.0e+00 1175.6
Blo01g00030 CCT 36 1148 Histidine Kinase Gene Family AT1G09570 52.6 0.0e+00 1164.8
Blo02g00140 BCT 494 1519 Histidine Kinase Gene Family AT1G09570 53.7 0.0e+00 1130.5
Blo01g00879 . 36 1109 Histidine Kinase Gene Family AT1G09570 50.3 2.9e-310 1061.6
Blo15g00443 . 12 682 Histidine Kinase Gene Family AT1G09570 61.9 3.7e-249 858.6
Blo01g00030 CCT 12 1084 Histidine Kinase Gene Family AT2G18790 75.4 0.0e+00 1607.0
Blo07g00144 CCT 700 1741 Histidine Kinase Gene Family AT2G18790 75.7 0.0e+00 1601.3
Blo01g00879 . 15 1047 Histidine Kinase Gene Family AT2G18790 62.1 0.0e+00 1286.6
Blo02g00140 BCT 494 1510 Histidine Kinase Gene Family AT2G18790 53.2 0.0e+00 1083.2
Blo18g00692 . 132 1166 Histidine Kinase Gene Family AT2G18790 50.8 9.7e-306 1046.6
Blo15g00443 . 23 683 Histidine Kinase Gene Family AT2G18790 61.5 6.9e-235 811.2
Blo02g00140 BCT 499 1520 Histidine Kinase Gene Family AT5G35840 62.6 0.0e+00 1308.1
Blo07g00144 CCT 691 1792 Histidine Kinase Gene Family AT5G35840 51.7 0.0e+00 1133.2
Blo18g00692 . 120 1226 Histidine Kinase Gene Family AT5G35840 50.2 0.0e+00 1105.5
Blo01g00030 CCT 39 1144 Histidine Kinase Gene Family AT5G35840 50.9 0.0e+00 1102.4
Blo15g00443 . 10 682 Histidine Kinase Gene Family AT5G35840 68.7 1.1e-274 943.3
Blo15g00444 BCT 1 367 Histidine Kinase Gene Family AT5G35840 52.7 3.2e-107 387.1
Blo07g00144 CCT 673 1792 Histidine Kinase Gene Family AT4G16250 72.9 0.0e+00 1638.2
Blo01g00030 CCT 8 1144 Histidine Kinase Gene Family AT4G16250 72.0 0.0e+00 1637.5
Blo01g00879 . 35 1109 Histidine Kinase Gene Family AT4G16250 60.1 0.0e+00 1307.7
Blo02g00140 BCT 482 1520 Histidine Kinase Gene Family AT4G16250 52.4 1.1e-312 1069.7
Blo15g00443 . 24 683 Histidine Kinase Gene Family AT4G16250 59.4 2.4e-227 786.2
Blo01g00879 . 14 1110 Histidine Kinase Gene Family AT4G18130 64.4 0.0e+00 1400.6
Blo07g00144 CCT 708 1786 Histidine Kinase Gene Family AT4G18130 58.5 0.0e+00 1249.2
Blo01g00030 CCT 39 1145 Histidine Kinase Gene Family AT4G18130 57.1 0.0e+00 1237.6
Blo15g00443 . 28 683 Histidine Kinase Gene Family AT4G18130 55.3 7.8e-207 718.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009148 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00879 Blo_Chr01 FPKM 15.868805 16.776932 0.155236 1.429457 2.619824 1.82805 3.604928 11.175135 12.166347 11.327529