Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00888 ATGGCGCATTTAGATCAAAACCAGTCGAATATGGTGGATTCGCAGCAGAGAAAAATGCGTAGAGGAAAGATCGAGATTAAGCGAATTGAAAATACTACAAATCGTCAAGTAACTTTCTGCAAGCGTCGAAATGGGTTGCTGAAGAAAGCGTACGAGCTTTCTGTTCTTTGTGATGCTGAGGTTGCTCTAATTGTCTTCTCTAGCAGAGGCAAACTCTATGAATATGCTAATAACAGTTTTTTGGGTGGGGGGAGGCGTAGATCTGGTGCAAAAGATAGCAATAATGTCGTACTCATGGAAGATGATAATACTGCCAGCGTGGATCAGGCAGCCAATCACTCGACCAAATTAAGTGTCAAAGGAACAGTGGAGAGGTATAAAAAGACTTGCATGGATTCCTCAAGTAACAGAACCGCGACAGAAGCCAATATCCAGTCTTACCAACAAGAGTCGGCGAAACTTCGCGTGCAGATTGGAAATTTGCAGAATTCAAACAGGCAAATGCTGGGTGGTCAGTCTGTGAGTGGTTTGAAAGATAAGGACCTGAAGAACATGGAAAAAGACTTGGAGAAAGGAATAAGCAAAATCAGATCGAGAAAGAATGAGCTTTTATTTGCAGAAATTGAGTACATGAGGAAAAAGGAAATTGAACTTCGCAACAATAACCAGCTCCTCCGAGCCAAGTGTGGAAGAAGCCAAGAAGAAGTGAACTTAATGGCAGAAGGAGTGAACTATGACCATTATGATTCGAGAAACTACATTCAAATGAATACATTGCATGACTCTACTCATCACTACCCTCAACAACACAACACTGCCCCTCAATTGCTCTAA 834 41.85 MAHLDQNQSNMVDSQQRKMRRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGKLYEYANNSFLGGGRRRSGAKDSNNVVLMEDDNTASVDQAANHSTKLSVKGTVERYKKTCMDSSSNRTATEANIQSYQQESAKLRVQIGNLQNSNRQMLGGQSVSGLKDKDLKNMEKDLEKGISKIRSRKNELLFAEIEYMRKKEIELRNNNQLLRAKCGRSQEEVNLMAEGVNYDHYDSRNYIQMNTLHDSTHHYPQQHNTAPQLL 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17763511 17767113 - BLOR00888 Blo01g00888 55328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00888 277 Coils Coil 137 164 - -
Blo01g00888 277 ProSitePatterns MADS-box domain signature. 21 75 IPR002100 GO:0003677|GO:0046983
Blo01g00888 277 MobiDBLite consensus disorder prediction 1 20 - -
Blo01g00888 277 MobiDBLite consensus disorder prediction 1 15 - -
Blo01g00888 277 Pfam K-box region 141 229 IPR002487 GO:0003700|GO:0005634|GO:0006355
Blo01g00888 277 SUPERFAMILY SRF-like 21 81 IPR036879 GO:0003677|GO:0046983
Blo01g00888 277 CDD MADS_MEF2_like 20 80 IPR033896 GO:0000977|GO:0045944
Blo01g00888 277 Coils Coil 12 32 - -
Blo01g00888 277 ProSiteProfiles K-box domain profile. 144 235 IPR002487 GO:0003700|GO:0005634|GO:0006355
Blo01g00888 277 PANTHER SERUM RESPONSE FACTOR HOMOLOG 19 262 - -
Blo01g00888 277 PANTHER FLORAL HOMEOTIC PROTEIN AGAMOUS-LIKE 19 262 - -
Blo01g00888 277 Gene3D - 31 101 IPR036879 GO:0003677|GO:0046983
Blo01g00888 277 SMART madsneu2 19 78 IPR002100 GO:0003677|GO:0046983
Blo01g00888 277 ProSiteProfiles MADS-box domain profile. 19 79 IPR002100 GO:0003677|GO:0046983
Blo01g00888 277 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 28 75 IPR002100 GO:0003677|GO:0046983
Blo01g00888 277 PRINTS MADS domain signature 21 41 IPR002100 GO:0003677|GO:0046983
Blo01g00888 277 PRINTS MADS domain signature 56 77 IPR002100 GO:0003677|GO:0046983
Blo01g00888 277 PRINTS MADS domain signature 41 56 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00888 Blo-Chr1:17763511 Blo14g00857 Blo-Chr14:31482245 6.08E-81 dispersed
Blo01g00888 Blo-Chr1:17763511 Blo11g00002 Blo-Chr11:10151 1.39E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11887 PF01486 K-box 3.90E-22 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00888 K09264 - twl:120012389 293.508