Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00904 ATGGGCCAGAAGACTCTGATCTACGCTTTTGTTTCTCGCGGAACTGTGGTTCTCGCGGAGTACACGGAATTCAGCGGAAATTTCAATTCCATAGCGTTTCAGTGTCTTCAGAAACTCCCTGCAACTAACAACAAGTTCACTTATAATTGCGATGGCCATACTTTCAATTACCTTGTTGATAATGGCTACACATACTGCGTAGTTGCTGTGGAATCAGCTGGAAGGCAAGTTCCTGTGGCTTTTTTGGAGCGTGTGAAGGAGGATTTTGTGTTGAAATATGGTGGAGGAAAGGCTGCTACTGCTTCTGTCAACAGCCTGAACAAGGAATTTGGGTCAAAACTGAAAGAGCACATGCAGTATTGTGCTGATCATCCTGAAGAGATAAACAAGCTTGCAAAGGTTAAAGCTCAGGTTTCAGAAGTAAAAGGTGTTATGATGGAGAATATTGAAAAGGTTTTGGATAGAGGAGAGAAGATAGAGCTTTTGGTTGATAAGACAGAGAACCTTCATCAACAGGTGCTGTGTATTGATTTATCCATAATCAGGGACAAATTTTGTTGCTCTAGTTTGGCTAAGGGCAGATTGAGTGGTGGTAGAATCTACCTGCCATCGGGCTGCCTTGGCGCCTCTAAGAACCGAGCCGGCACCGAGAACCAGACCGGAACCGGCGGTTTTGGTGCCCGCTCGATGTGGTTTTCGTCAGAACTGGACCGAAAACGGTTCTGGTTGTTGCAAAACCGTTTTCTTGGTCAGTTCTCACTCTCTCAGTCGACGGCGACCGTCCCATTCCGATTTCCGACAACCCCGATTTCTCGACTCCTTGTATCTCGGCGACCAATGAGGCAACGCGACGACTATCGCCTACGAGAGAACAGACTAACAGAGCTGCGACTGAGGACTGACGACTGTAAAGGGTTCCGACAAAGCTGCGACAGAGCTGAGAGCATTTCGACGAGGCGACGACGACAACAGCTCCAACGACCAACCTAA 990 47.58 MGQKTLIYAFVSRGTVVLAEYTEFSGNFNSIAFQCLQKLPATNNKFTYNCDGHTFNYLVDNGYTYCVVAVESAGRQVPVAFLERVKEDFVLKYGGGKAATASVNSLNKEFGSKLKEHMQYCADHPEEINKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQVLCIDLSIIRDKFCCSSLAKGRLSGGRIYLPSGCLGASKNRAGTENQTGTGGFGARSMWFSSELDRKRFWLLQNRFLGQFSLSQSTATVPFRFPTTPISRLLVSRRPMRQRDDYRLRENRLTELRLRTDDCKGFRQSCDRAESISTRRRRQQLQRPT 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18753578 18759958 - BLOR00904 Blo01g00904 55344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00904 329 PANTHER SYNAPTOBREVIN, LONGIN-LIKE DOMAIN PROTEIN-RELATED 1 189 - -
Blo01g00904 329 PANTHER SNARE PROTEINS 1 189 - -
Blo01g00904 329 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 130 202 IPR042855 -
Blo01g00904 329 Gene3D Longin domain 1 129 - -
Blo01g00904 329 ProSitePatterns Synaptobrevin signature. 148 167 IPR001388 GO:0016021|GO:0016192
Blo01g00904 329 SUPERFAMILY SNARE-like 6 121 IPR011012 -
Blo01g00904 329 SMART Longin_2 31 113 IPR010908 -
Blo01g00904 329 CDD Longin 7 121 IPR010908 -
Blo01g00904 329 Gene3D - 130 173 - -
Blo01g00904 329 SUPERFAMILY SNARE fusion complex 125 172 - -
Blo01g00904 329 PRINTS Synaptobrevin signature 135 154 IPR001388 GO:0016021|GO:0016192
Blo01g00904 329 PRINTS Synaptobrevin signature 155 174 IPR001388 GO:0016021|GO:0016192
Blo01g00904 329 CDD R-SNARE 129 172 - -
Blo01g00904 329 Pfam Regulated-SNARE-like domain 34 110 IPR010908 -
Blo01g00904 329 ProSiteProfiles Longin domain profile. 10 114 IPR010908 -
Blo01g00904 329 Pfam Synaptobrevin 129 172 IPR042855 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00904 Blo-Chr1:18753578 Blo12g00122 Blo-Chr12:8558691 9.67E-104 dispersed
Blo14g00808 Blo-Chr14:26537666 Blo01g00904 Blo-Chr1:18753578 2.00E-13 transposed
Blo01g00904 Blo-Chr1:18753578 Blo11g00201 Blo-Chr11:1597990 1.26E-117 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00904 K08511 - pop:7481781 327.405