Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00909 ATGGACTGGAATTGGTTGAGCCTATGTGGCCCAAAGGCCCAATACCTGCCTGCTTTTCCTGCAAGAAACGAAGGCTGCTTAAAGCGTAACTACAAAATCAAGACTAGAGCACAGCAAGCTTCTTCTACTTCCCTTTTGTCTCAGCTACTCCTGCAGCTTGGTTCAACTGCGATTGGGTTGAAGACTAAAGAGGGTGTCGTGCTTGCAGTTGAGAAACGTATTACTTCTCCTCTATTGGAACCTAGTAGTGTGGAGAAAATCATGGAAGTTGATTCACATATAGGATGTGCAATGAGTGGATTAATTGCTGATGCTCACACTCTTGTTGAACACTCACGTGTGGAGACTCAGAATCATAGGTTCTCTTATGGTGAGCCAATGACTGTCGAGTCTACAACGCAAGCGCTTTGTGATTTGGCCCTAAGATTTGGTGAAGGCGATGAAGAGTCCATGTCGCGGCCTTTTGGTGTGGCTTTACTAATTGCTGGCCATGATGAGAAAGGTCCCAGCTTGTATTACACTGATCCATCTGGTACATTTTGGCAATGCAATGCAAAAGCTATTGGTTCAGGCTCCGAAGGTGCAGACAGTTCTCTGCAAGAACAGTACAATAAGGATCTAACTCTCAAAGAGGCTGAAACCATTGCACTTTCCATTCTGAAGCAAGTCATGGAAGAAAAGGTGACGCCCAATAATGTGGATATCGCGAAGGTGGCTCCTACGTACCATTTGTACAACCCTTCAGAGGTGGAGGCAGTTATTAACCGCATTTGA 774 45.35 MDWNWLSLCGPKAQYLPAFPARNEGCLKRNYKIKTRAQQASSTSLLSQLLLQLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEVDSHIGCAMSGLIADAHTLVEHSRVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVALLIAGHDEKGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLKEAETIALSILKQVMEEKVTPNNVDIAKVAPTYHLYNPSEVEAVINRI 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19682939 19687906 - BLOR00909 Blo01g00909 55349

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00909 257 Pfam Proteasome subunit 53 238 IPR001353 GO:0005839|GO:0051603
Blo01g00909 257 ProSiteProfiles Proteasome alpha-type subunit profile. 43 254 IPR023332 -
Blo01g00909 257 PANTHER PROTEASOME SUBUNIT ALPHA TYPE 51 256 - -
Blo01g00909 257 CDD proteasome_alpha_type_5 56 238 IPR033812 GO:0019773|GO:0043161
Blo01g00909 257 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 53 255 IPR029055 -
Blo01g00909 257 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 49 257 IPR029055 -
Blo01g00909 257 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 51 256 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00909 K02729 PSMA5; 20S proteasome subunit alpha 5 [EC:3.4.25.1] - csv:101218476 392.504
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00120 Blo-Chr1:1646987 Blo01g00909 Blo-Chr1:19682939 1.29E-13 dispersed
Blo01g00909 Blo-Chr1:19682939 Blo07g00426 Blo-Chr7:8360156 5.55E-41 dispersed
Blo01g00909 Blo-Chr1:19682939 Blo11g00203 Blo-Chr11:1614214 6.33E-146 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g171 Blo01g00909 . . . . . . . . Cmo18g00539 . Cma18g00561 . . . Cpe09g00678 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005108 1 1 2 2 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 5 3 1 41