Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01002 ATGGCTTCACCATCTCTCCTCCTGCTGCTGTCATGCTGTCTAGCATGCGTTGCTTCGTCCTTGCAGGAGGGTTCCCATACCTCAAGTACTCCCAACCCCAACCCCAACCCCGACCCCAACCTGAAAGCGTTGAACGTAATCGACGCCTGCTGGCGCTCCAATCCAAATTGGGTCGCCAACCGACGCTCATTGGCAGACTGCTCAGTCGGTTTTGGAAAGGACGCGCTTGGAGGGAAGTTTGGTGCTATCTACTTTGTCACTGATTCTTCCGACGACCCGGAGAACCCAAAACCCGGGACGTTACGCTACGGTGTGATTCAGTTAAAGCCATTGTGGATCGTTTTTGCTAGGAGCATGGTTATTGTACTTAAAAACGAGCTGATTGTGACTAGTTACAAGACCATTGATGGGAGAGGGGTGAATGTGGAAATTACATATGGACCCTGCATCACCTTGCAATACGTAAGCCATGTTATTATTCATGGAATCAGCATTCACGATTGTAAACCAGGTAAGCCTGGGCTTGTTCGGAGCAGCACCGCACATATCGGACGTCGTCAAGGCTCAGATGGAGACGCCATTTCCATCTACGGGTCTTCTAATATTTGGATAGACCACTGCTTCATCGCCCACAGCGCTGACGGCCTCATCGATATCATACATGCTTCTACTGCAATCACCATCTCTAACAACTACTTCGCTCAGCACGACAAAGTGATGCTGCTTGGACACAATGATATGTTCACGGGTGATAAAGTGATGAAAGTCACCATAGCCTTCAACCGCTTCGGTGCCGGCCTCATTGAAAGGATGCCCAGGGTAAGGTTTGGCTACGCTCATGTTGCCAACAATAATTATGAGGAGTGGCAGATGTACGCCATTGGTGGGAGTGCTAGTCCAACCATATTCAGTGAAGGAAACTACTTCGTAGCACCTAATAAACTCTTTTCGAAACAGGTTACAAAAAGAGAGGTGAAAAGTGGTTGGAAGGACTGGAAATGGAGGTCTTCTAAGGATGTATTTATGAATGGTGCTTACTTTGTGCCATCTGGATGGGGAAGTTGTAGTCCAAATTACAGTCGGGCTCAGTCGTTCACGGTTGCTCAAGGCGCCATGGTTCCTGTTTTAACTGTCGGTGCAGGACCTTTACGTTGCTACATTGATCCGAAGCTGCCGTCGCTGGAGGTTGTCTCTCCGGAATCCTTCGAATCGACCACTTTCCGTTCTCCCGCGAGCGACCGTCACCGCGTCGTCACTGTTCGCAGCTCGGGAGTGTTCGAGAAGGTCGCTCACCGTACGCAGCCGCTCGAAGCTCGCCGGTCACCTCTGCATAGAGCTCGCTGGCCGGACGTCATCGCGTCGCTGCCGTCCGTTGAGTTCGCCGGTTCGTTGGTCGCCGACGTCTCTCTTCTCCCACTCGACTTCTCTCTCGGCCGACGCAAACAAGGGGGGGGGGGGGGGGGGAATGGGGAAGAGGAAACTAGGCATAAAAATTTCACGGGTTTCACACGGAGGGAGAGCGAGAACGAAGGAGAGAAGGAGAAGACAATCGAGAGAGCTCGCCGACAGGTTTCTGCTCGGCGACGAGGCGAGCTCCGGTGTGAGCGATGTCTAGGCAAACGACTATGGGTGAAATGGAGGAGCGAGATCCAGCTAGGGCTTGAGTTTCGGCTCCATCGGGAGATGTTTTCCATCGGAGTTTTGGGTTTCGATTGGGTGTGGCACAACCTGCGACCCGGGTGCTCCGACCCGGTTGCAAACGAAGTCTATTTGACCCGGTTTGGGTTGAACCATGGTTCGCTAAGACGAGTCTTCCACACATTCTTTCCAGCATGGAATCAAGGGACGTGGAGGGCAGCCTCTGAAAAGCTGAATGGAATCAAGGGGAAATTGTCGGGGATTTTTGGAGAACAAAAGGGCAAAGGACTCCTCTTCTCTGGAAAAATGCTGAAGACTGGTTGA 1962 51.94 MASPSLLLLLSCCLACVASSLQEGSHTSSTPNPNPNPDPNLKALNVIDACWRSNPNWVANRRSLADCSVGFGKDALGGKFGAIYFVTDSSDDPENPKPGTLRYGVIQLKPLWIVFARSMVIVLKNELIVTSYKTIDGRGVNVEITYGPCITLQYVSHVIIHGISIHDCKPGKPGLVRSSTAHIGRRQGSDGDAISIYGSSNIWIDHCFIAHSADGLIDIIHASTAITISNNYFAQHDKVMLLGHNDMFTGDKVMKVTIAFNRFGAGLIERMPRVRFGYAHVANNNYEEWQMYAIGGSASPTIFSEGNYFVAPNKLFSKQVTKREVKSGWKDWKWRSSKDVFMNGAYFVPSGWGSCSPNYSRAQSFTVAQGAMVPVLTVGAGPLRCYIDPKLPSLEVVSPESFESTTFRSPASDRHRVVTVRSSGVFEKVAHRTQPLEARRSPLHRARWPDVIASLPSVEFAGSLVADVSLLPLDFSLGRRKQGGGGGGNGEEETRHKNFTGFTRRESENEGEKEKTIERARRQVSARRRGELRCERCLGKRLWVKWRSEIQLGLEFRLHREMFSIGVLGFDWVWHNLRPGCSDPVANEVYLTRFGLNHGSLRRVFHTFFPAWNQGTWRAASEKLNGIKGKLSGIFGEQKGKGLLFSGKMLKTG 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29378370 29389666 - BLOR01002 Blo01g01002 55442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01002 653 SUPERFAMILY Pectin lyase-like 65 386 IPR011050 -
Blo01g01002 653 Gene3D - 44 384 IPR012334 -
Blo01g01002 653 PRINTS Pollen allergen Amb family signature 362 385 IPR018082 -
Blo01g01002 653 PRINTS Pollen allergen Amb family signature 292 311 IPR018082 -
Blo01g01002 653 PRINTS Pollen allergen Amb family signature 190 211 IPR018082 -
Blo01g01002 653 PRINTS Pollen allergen Amb family signature 270 289 IPR018082 -
Blo01g01002 653 PRINTS Pollen allergen Amb family signature 332 356 IPR018082 -
Blo01g01002 653 PRINTS Pollen allergen Amb family signature 90 115 IPR018082 -
Blo01g01002 653 PRINTS Pollen allergen Amb family signature 126 142 IPR018082 -
Blo01g01002 653 PRINTS Pollen allergen Amb family signature 67 84 IPR018082 -
Blo01g01002 653 Pfam Pectate lyase 125 309 IPR002022 -
Blo01g01002 653 PANTHER PECTATE LYASE 6 387 - -
Blo01g01002 653 PANTHER PECTATE LYASE 18-RELATED 6 387 IPR045032 GO:0030570
Blo01g01002 653 SMART amb_all 118 315 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01002 Blo-Chr1:29378370 Blo12g00125 Blo-Chr12:8720829 2.34E-144 dispersed
Blo12g00441 Blo-Chr12:21988055 Blo01g01002 Blo-Chr1:29378370 4.32E-44 dispersed
Blo13g00897 Blo-Chr13:31509656 Blo01g01002 Blo-Chr1:29378370 1.95E-40 dispersed
Blo01g01002 Blo-Chr1:29378370 Blo11g00727 Blo-Chr11:9288708 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01002 K01728 - jre:108979226 587.03