Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01030 ATGGCGGTATCTCCCAAAGCTTTTCCTTTGAGAAAGCGGCGGCCATCGGCCGGAGCTTTCGTATCGCCCCAATTAACGGGAATCAATCTCCTCCAATCACTGGTCTCCCTCTGTCAAGAAATTACGTCGATGAAGCCCCCGGAGTTCCCCCTCAGGCGCAATTCCCTAGCCCTCATTCGCAAAACCAAGATCCTCGCTGCTCTTTTTGAAGAGCTTCTTCAAAATCCTCTCTCATTCTCCCACTCCGCCTCTCTGTGCTTAGAAGAAATGTACGTTGTTTTGCAGAGAATCAAAGCTTTGATCGAAGACTGTTCCGTTGGAAGCAAGATGTGGCTGCTCGTGCAGATTGAATCGCTGGCTGATAATTTTCAGGAGCTCACAGTAGATTTATCGACTCTGCTTGATATTATACTGGTCAAAAAGGCTGGTATGAATGAGGATGTGGAAGAACTCGTTTATTTACTCAGAAAGCAGTGTTTGGAATCCAAAGCTTTTGTTGATCCCAGAGATGCCGATCTAAGACTCCGGGTTTTAACGATGCTTGATCAGATCAAAAACGAAATTGTTCCCGATGATACCAAGCTTTCAGAAATTTTCTGCAAGTTAGGGATAAGCGCCTCCTCGAGCTGCAGAGAAGAAATCGAGAATCTCGAAGACGAAGTTCAGAATCAAACGGATCAAAATGCACAGGCCGACACAATCGCTCTGATAGGGCTCGTTCGATATACGAAATGCGTTCTCTTCGGAGCCTCCACGCCTGATAAAGTCTTTCAGCCGATGAAATCGATGACAGAAATGGGAATTCCGGCCGATTTCAGGTGTCCGATTAGCCTCGAAATGATGAAAGATCCGGTGGTCGTTGCAACAGGACAGACGTACGATCGGGCATCCATCAGCTTCTGGATTGAATCTGGACACACCACGTGTCCAAAGACAGGTCAGACCCTGGCCCACACGGACTTGATCCCCAACCGAGCGTTGAGAAATTTGATAGTTATGTGGTGCCGTCATCATAGAATCCCCTTCGACACGACGGAGATTAGAGAGGGAGTCAATGGGATTTCGACGAACAAGGCGGCGATTGAAGCGACGAGAATGACTGCGTCGTTTCTGGTGAACAAGCTATCTGCCTCTCAGTCACCGGAGGTTGTTAATAGCATTGTCTATGAGCTGCGCGTTCTGGCCAAAACGGACTCCGACAGCCGAGGATTCATTGCCGAGGCAGAAGCGATTCCACTGCTGGTTGGTTTCCTGAACTCGAAGCACCCTAACCTACAGGTTAACGCTATAACGACGATCCTTAATCTTTCCATCCTCGAAGCGAACAAGAGGAGGATAATGGAGACGGAGGGAGCTTTAAGCGGTATCGTGGAAGTGATTAGTTCAGGTGCAATGTGGGAGGCGAAGGGAAATGCGGCAGCTACGGTGTTCAGCTTATCCGCTGACCACTCGTACAGAAGGAGAATTGGAAGGAAGACGGGTTTGATTAAGGCGTTGTTGGATTTGGCAGAGGAAGGGCGGGGCAATTCGAAGAGAGATGCGATGATGGCGATTCTGAATCTGGCAGCGGATAGGGAGACGGTGGGGCGATTGATTGAGGGCGGAGTGATGGAGACGGTCATACATGTTATCGATGAACTACAAGAGGAGGCGGTAAGCATCCTGGAAGTGGTGGTGAGAAGGGGAGGAGCGCTAGCAGTTGTTTCATCCTACAACTTCATTACGAAATTAAGCTCGATGTTCAGGAACGGTTCCGAAAGAACAAGGGAGAGTGCAGCGGCGACGCTGGTCAACATTTGCCGGAAAGGTGGGTCGGAGGCGGTAGCTGAAGTTGCGGCGATTCCAGGGATAGAGAGACTAGTGTGGGAGGTCATGGAAGCTGGAACTCCGAGAGGAAGAAGAAAAGCTGCGTCGCTGTTGAGGATTCTACGACGATGGGCGGCTGGTCTGGGCAGCAACAGTGCGATTACCGATTCATCGGCAACCTCCTTGGCACTGGCAATCACCCATTAA 2013 49.93 MAVSPKAFPLRKRRPSAGAFVSPQLTGINLLQSLVSLCQEITSMKPPEFPLRRNSLALIRKTKILAALFEELLQNPLSFSHSASLCLEEMYVVLQRIKALIEDCSVGSKMWLLVQIESLADNFQELTVDLSTLLDIILVKKAGMNEDVEELVYLLRKQCLESKAFVDPRDADLRLRVLTMLDQIKNEIVPDDTKLSEIFCKLGISASSSCREEIENLEDEVQNQTDQNAQADTIALIGLVRYTKCVLFGASTPDKVFQPMKSMTEMGIPADFRCPISLEMMKDPVVVATGQTYDRASISFWIESGHTTCPKTGQTLAHTDLIPNRALRNLIVMWCRHHRIPFDTTEIREGVNGISTNKAAIEATRMTASFLVNKLSASQSPEVVNSIVYELRVLAKTDSDSRGFIAEAEAIPLLVGFLNSKHPNLQVNAITTILNLSILEANKRRIMETEGALSGIVEVISSGAMWEAKGNAAATVFSLSADHSYRRRIGRKTGLIKALLDLAEEGRGNSKRDAMMAILNLAADRETVGRLIEGGVMETVIHVIDELQEEAVSILEVVVRRGGALAVVSSYNFITKLSSMFRNGSERTRESAAATLVNICRKGGSEAVAEVAAIPGIERLVWEVMEAGTPRGRRKAASLLRILRRWAAGLGSNSAITDSSATSLALAITH 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32165547 32167559 - BLOR01030 Blo01g01030 55470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01030 670 ProSiteProfiles U-box domain profile. 267 341 IPR003613 GO:0004842|GO:0016567
Blo01g01030 670 Gene3D - 25 139 IPR036537 GO:0007166
Blo01g01030 670 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 16 11 658 - -
Blo01g01030 670 Gene3D - 353 664 IPR011989 -
Blo01g01030 670 SUPERFAMILY RING/U-box 262 341 - -
Blo01g01030 670 SMART arm_5 398 438 IPR000225 GO:0005515
Blo01g01030 670 SMART arm_5 560 601 IPR000225 GO:0005515
Blo01g01030 670 SMART arm_5 483 523 IPR000225 GO:0005515
Blo01g01030 670 Pfam Armadillo/beta-catenin-like repeat 399 437 IPR000225 GO:0005515
Blo01g01030 670 SUPERFAMILY ARM repeat 370 643 IPR016024 -
Blo01g01030 670 CDD RING-Ubox_PUB 272 314 IPR045210 -
Blo01g01030 670 Coils Coil 207 234 - -
Blo01g01030 670 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 342 IPR013083 -
Blo01g01030 670 PANTHER U BOX DOMAIN-CONTAINING 11 658 - -
Blo01g01030 670 Pfam U-box domain 268 339 IPR003613 GO:0004842|GO:0016567
Blo01g01030 670 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 409 451 IPR000225 GO:0005515
Blo01g01030 670 SMART Ubox_2 271 334 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01030 Blo-Chr1:32165547 Blo11g00265 Blo-Chr11:2133854 2.69E-142 dispersed
Blo01g01030 Blo-Chr1:32165547 Blo13g00851 Blo-Chr13:31131878 1.23E-115 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01030 - - cmax:111465978 863.603