Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01060 ATGGCTACGAGTCCACGCACCGTTGAGGAGATCTACAGAGATTACAGTGCCAGAAGAACTGGTGTTGTCCGCGCTTTGACTCATGATGTGGGTGAATTCTATAGTCTCTGTGATCCAGACAAGGAAAACTTGTGTCTTTACGGACACCCAAATGAAGCCTGGGAAGTAACTCTTCCTGCAGAGGAGGTTCCACCAGAGCTTCCGGAGCCAGTACTTGGAATAAATTTTGCGAGAGATGGGATGAACCGCAAAGACTGGATTTCTTTAGTTGCTGTGCACAGTGATTCATGGTTGCTTTCTGTAGCTTTCTATCTTGGAGCCCGTCTTAACCGGACCGAAAGGAAGCATCTTTTTAGCTTGATCAATGATTTACCAACTGTCTTTGAAGTTGTGACCGAGAGAAAGCCTATTAAAGAGAAACCCAGTGTGGACAGTGGAAGCAAATCTAGATCAAGCACAAAGAGATTAAATGATGGTCAAGTGAAAAGCAACCCAAAAGCTGCCGAAGCAAATTACGAAGAAGAAGAAGATGAAGACGAACTCAACGAAACCCTCTGTGGGAGCTGTGGCGGGAATTACAGTGCAGATGAGTTTTGGATTGGCTGCGATGTATGTGAAAGGTGGTTCCACGGGAAGCTGGCGTTCTTGCTGAGCTTAGCCTGCCAGCCCCTCAAGTTGACAGTGGGTATGGGTGGCTCCAAGAAAGAGCGATTGAATTGGACCAAAGATTTACATCAACAGTTTGTAGAGGCAGTAAATCAGCTTGGTGGTCTTGACAGGGCAACGCCGAAAGGGATATTGAAGACTATGGCTGTTTCTGGATTGAAAATCAAACACGTCAAAAGCCACTTGCAGGTTTCTCTTCCCTACAAAACAAAGCCTTTTGGCTTGCAATACTCAAAAGAGAAAGCAAGAGACAAAGTTGACAGGATAAGCACTTCAGAGATCATCCCTAATTTCAGTGAATCTTGTTCTTTTCAACTTAAAGAAGCTTTGCAAATTCATGCTGACGCCCAAACACGACTTAGCGTTCAATCGGAGATTCACCAGAGTTTAGCGCTTAAAATGGAAGCACAAGGAAGGTTTCTCAAGAATAGAACAGAGGAGCTGCGCAGAACTCTCTGTGCAAAATCACAGCTTTCCCTCTGCGATGAATCCGAATCAAACACAAAGGAAAATCGAACAAAACTCTCTGATAATAATTCCGAGTCCACGAAAAGAATCAGAATTGAAAATGGCGGATTTTCACCAAGCTTTACGCCCTCTTCACTTGGCTCACAATCTCACAGCTCTCTACAGTGGCATCCTCAAAAGATATAG 1320 44.47 MATSPRTVEEIYRDYSARRTGVVRALTHDVGEFYSLCDPDKENLCLYGHPNEAWEVTLPAEEVPPELPEPVLGINFARDGMNRKDWISLVAVHSDSWLLSVAFYLGARLNRTERKHLFSLINDLPTVFEVVTERKPIKEKPSVDSGSKSRSSTKRLNDGQVKSNPKAAEANYEEEEDEDELNETLCGSCGGNYSADEFWIGCDVCERWFHGKLAFLLSLACQPLKLTVGMGGSKKERLNWTKDLHQQFVEAVNQLGGLDRATPKGILKTMAVSGLKIKHVKSHLQVSLPYKTKPFGLQYSKEKARDKVDRISTSEIIPNFSESCSFQLKEALQIHADAQTRLSVQSEIHQSLALKMEAQGRFLKNRTEELRRTLCAKSQLSLCDESESNTKENRTKLSDNNSESTKRIRIENGGFSPSFTPSSLGSQSHSSLQWHPQKI 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35696223 35700627 + BLOR01060 Blo01g01060 55500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01060 439 PANTHER CPG BINDING PROTEIN 2 214 IPR045104 GO:0006355|GO:0042393
Blo01g01060 439 Pfam Alfin 7 132 IPR021998 GO:0006355|GO:0042393
Blo01g01060 439 SUPERFAMILY Homeodomain-like 233 286 IPR009057 -
Blo01g01060 439 MobiDBLite consensus disorder prediction 387 406 - -
Blo01g01060 439 MobiDBLite consensus disorder prediction 139 179 - -
Blo01g01060 439 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 2 214 - -
Blo01g01060 439 SUPERFAMILY FYVE/PHD zinc finger 174 212 IPR011011 -
Blo01g01060 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 175 216 IPR013083 -
Blo01g01060 439 MobiDBLite consensus disorder prediction 407 439 - -
Blo01g01060 439 Gene3D - 234 292 - -
Blo01g01060 439 Pfam MYB-CC type transfactor, LHEQLE motif 327 365 IPR025756 -
Blo01g01060 439 MobiDBLite consensus disorder prediction 146 160 - -
Blo01g01060 439 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 232 292 IPR017930 -
Blo01g01060 439 MobiDBLite consensus disorder prediction 385 439 - -
Blo01g01060 439 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 235 286 IPR006447 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01060 Blo-Chr1:35696223 Blo12g00390 Blo-Chr12:20605029 9.96E-119 dispersed
Blo01g01060 Blo-Chr1:35696223 Blo13g00799 Blo-Chr13:30718106 5.79E-111 wgd
Blo01g01060 Blo-Chr1:35696223 Blo09g00268 Blo-Chr9:11790313 9.18E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11891 PF12165 Alfin 5.30E-66 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01060 - - cit:102609983 372.859