Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01107 ATGAGGCCGATTTTGATGAAAGGGCACGAGAGGCCATTGACGTTCCTCAAGTATAATAGGGACGGTGACCTCTTATTCTCCTGCGCCAAGGATCACAACCCGACTGTTTGGTATGCTGATAATGGCGAGCGTTTGGGTACTTATCGTGGCCATAACGGTGCCGTCTGGTGCTGCGACGTCTCCAGGGATTCAATGCGTCTGATCACTGGAAGTGCAGATCAGACGGCTAAGGTGTGGAATGTTCAAACAGGCCAACAACTCTTCACTTTTAGTTTTGGCTCGCCAGCAAGAGCCGTCGATTTCTCTGTTGGTGACAAGCTTGCTGTGATTACTACTGATCCTTTCATGGAATTGCCTTCTGCTATTCATGTTAAACGAATTGCCCAAGACCCTGTCGATCAGACGAGTGATTCTGTGCTAGTTATTAAGGGTCCTCAAGGAAGAATTAATAGAGCTATATGGGGACCCCTAAACAAAACAATTATAAGTGCTGGAGAAGATGCTATGATTCGTATTTGGGATTCCGAGACAGGTAAACTTATTAAAGAATCTGATAAGGAGCTCGGGCACAAGAAAACAATTACTTCACTTTCAAAATCAGCTGATGGTTCACATTTTCTCACTGGTTCCTTGGATAAATCTGCGAAATTGTGGGATGTCAGAACATTGACCCTAATCAAGACCTATGTGACAGAGCGCCCAGTTAACGCAGTTGCTATTTCACCACTGCTTGACCATGTTGTGATTGGTGGTGGACAGGATGCATCTGCTGTCACAACAACTGATCATCGTGCTGGAAAGTTTGAAGCCAAATTTTTCGACAAGATCCTTCAAGAGGAAATTGGAGGTGTAAAAGGGCATTTTGGACCAATAAATGCTTTGGCGTTTAATCCTGACGGCAAAAGCCCTCGAAAATCCTATTTGGCCACAACTGTTGCTATGCTGGGACGAGGAGATTGTATTTGTCTTTTAGCCAACTGTTTAGGCAGGAATGGAACCCATGACTGTGGTGGTAAAGCATCTTAG 1026 44.83 MRPILMKGHERPLTFLKYNRDGDLLFSCAKDHNPTVWYADNGERLGTYRGHNGAVWCCDVSRDSMRLITGSADQTAKVWNVQTGQQLFTFSFGSPARAVDFSVGDKLAVITTDPFMELPSAIHVKRIAQDPVDQTSDSVLVIKGPQGRINRAIWGPLNKTIISAGEDAMIRIWDSETGKLIKESDKELGHKKTITSLSKSADGSHFLTGSLDKSAKLWDVRTLTLIKTYVTERPVNAVAISPLLDHVVIGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSPRKSYLATTVAMLGRGDCICLLANCLGRNGTHDCGGKAS 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 39402052 39405647 - BLOR01107 Blo01g01107 55547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01107 341 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 187 222 - -
Blo01g01107 341 SMART WD40_4 277 325 IPR001680 GO:0005515
Blo01g01107 341 SMART WD40_4 135 174 IPR001680 GO:0005515
Blo01g01107 341 SMART WD40_4 177 219 IPR001680 GO:0005515
Blo01g01107 341 SMART WD40_4 1 38 IPR001680 GO:0005515
Blo01g01107 341 SMART WD40_4 41 80 IPR001680 GO:0005515
Blo01g01107 341 SMART WD40_4 222 261 IPR001680 GO:0005515
Blo01g01107 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 183 IPR001680 GO:0005515
Blo01g01107 341 SUPERFAMILY WD40 repeat-like 4 301 IPR036322 GO:0005515
Blo01g01107 341 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 142 179 - -
Blo01g01107 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 187 228 IPR001680 GO:0005515
Blo01g01107 341 ProSitePatterns Trp-Asp (WD) repeats signature. 67 81 IPR019775 -
Blo01g01107 341 Hamap Eukaryotic translation initiation factor 3 subunit I [EIF3I]. 1 312 IPR027525 GO:0003743|GO:0005737|GO:0005852
Blo01g01107 341 PRINTS G protein beta WD-40 repeat signature 67 81 IPR020472 -
Blo01g01107 341 PRINTS G protein beta WD-40 repeat signature 161 175 IPR020472 -
Blo01g01107 341 PRINTS G protein beta WD-40 repeat signature 206 220 IPR020472 -
Blo01g01107 341 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 1 302 - -
Blo01g01107 341 CDD WD40 7 301 - -
Blo01g01107 341 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 48 85 - -
Blo01g01107 341 Gene3D - 1 320 IPR015943 GO:0005515
Blo01g01107 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 48 89 IPR001680 GO:0005515
Blo01g01107 341 ProSitePatterns Trp-Asp (WD) repeats signature. 161 175 IPR019775 -
Blo01g01107 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 6 47 IPR001680 GO:0005515
Blo01g01107 341 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 1 302 - -
Blo01g01107 341 Pfam WD domain, G-beta repeat 43 80 IPR001680 GO:0005515
Blo01g01107 341 Pfam WD domain, G-beta repeat 189 219 IPR001680 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01107 Blo-Chr1:39402052 Blo08g00269 Blo-Chr8:3410978 1.02E-35 dispersed
Blo01g01107 Blo-Chr1:39402052 Blo05g00724 Blo-Chr5:25414576 6.97E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01107 K03246 - csv:101211648 584.334