Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01112 ATGGAAGCAGTGATGGCCGATTCCAGATTTTCTTTCGGACTTGTTGCTTTCGCCGCTCTCGTTTTCGCCATCTTCCTACCTATCGCTCACGCACAGTCCCTCGCAGCTGCTCCCACTCCCTCCAGCGACGCAAGCCTTCTCATTGTGTCTGCTTATTTGGGTTTTTGGCTCCTTTCCTCCGGCAACCCATCTCCTTCCGAGATCGAGACTCCACTTCTCCAATCTAAAGTTCTCAGCTTTGGATTCGGAAAGTTTTCGTGGTTAGGGCTTACCATCGGGTATTTTGTGTTTAGGAGATCTGGAACTTTCTTCCCCCCTCCAATGACGCTGCCCATGGAACCGAGAACCGCCGGATTCGGACCTGGAACCGACCTCGGTTCCGGGTTTGGGTCCAGACCCGAATGGTCCCGGGTTCGGTGCCGGCTTCTCGGAACCGAGAACCGACTACTCGTGGCCGATGCTAGAATCCCAGGACTTTACGCCGGCGGTTCATGGGAGAGCGCACACGCTACCTTCTATGGCGGCAGCGACGCCTCCGGAACAATGGGCGGTGCTTGTGGGTATGGAAATCTGTATAGCCAAGGCTACGGAGTGAATACTGCCGCACTAAGCACCGCTCTGTTCAACAACGGACTCAGTTGCGGTGCCTGCTTTGAGATAAAGTGCGCCGACGCTCCAAAATGGTGCCACTCCGGTAAGCCGTCCATCTTCATCACAGCTACCAATTTTTGCCCTCCAAACTTCGCTCTTCCTAACGACAATGGCGGCTGGTGCAACCCTCCTCGCCCGCATTTCGACCTTGCCATGCCCATGTTCCTCAAGATAGCGGAGTACCGCGCCGGAATAGTTCCTGTTGCCTTCCGCCGGTTCCCCTGCAGAACGCCCGGAGGAATCAGGTTCACGATCAACGGCTTCCGTTACTTCAACTTGGTTCTGATCACCAACGTCGCGGGTGCAGGCGATATCGTGCGCGTCAGCGTGAAGGGTACAAACACAGGATGGATGAGCATGAGCCGAAACTGGGGGCAAAACTGGCAATCCAACTCCCCCTTGGTGGGCCAGTCTCTTTCCTTTAGAGTGACGGGCAGTGACGGACGCACGTCTACTTCATTGAACGTGGCACCATCCCATTGGAGATTCGGACAGACCTTCACCGGAAAAAATTTCCGCGTGTGA 1176 55.36 MEAVMADSRFSFGLVAFAALVFAIFLPIAHAQSLAAAPTPSSDASLLIVSAYLGFWLLSSGNPSPSEIETPLLQSKVLSFGFGKFSWLGLTIGYFVFRRSGTFFPPPMTLPMEPRTAGFGPGTDLGSGFGSRPEWSRVRCRLLGTENRLLVADARIPGLYAGGSWESAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCADAPKWCHSGKPSIFITATNFCPPNFALPNDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAFRRFPCRTPGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGTNTGWMSMSRNWGQNWQSNSPLVGQSLSFRVTGSDGRTSTSLNVAPSHWRFGQTFTGKNFRV 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 39657479 39659484 + BLOR01112 Blo01g01112 55552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01112 391 Gene3D - 152 293 IPR036908 -
Blo01g01112 391 PRINTS Expansin/Lol pI family signature 164 179 IPR007118 GO:0005576
Blo01g01112 391 PRINTS Expansin/Lol pI family signature 372 386 IPR007118 GO:0005576
Blo01g01112 391 PRINTS Expansin/Lol pI family signature 334 348 IPR007118 GO:0005576
Blo01g01112 391 PRINTS Expansin/Lol pI family signature 204 222 IPR007118 GO:0005576
Blo01g01112 391 PRINTS Expansin/Lol pI family signature 280 296 IPR007118 GO:0005576
Blo01g01112 391 PRINTS Expansin/Lol pI family signature 182 200 IPR007118 GO:0005576
Blo01g01112 391 SUPERFAMILY PHL pollen allergen 295 386 IPR036749 -
Blo01g01112 391 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 183 297 IPR007112 -
Blo01g01112 391 SMART dpbb_1 200 287 IPR007112 -
Blo01g01112 391 Pfam Expansin C-terminal domain 298 375 IPR007117 -
Blo01g01112 391 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 307 386 IPR007117 -
Blo01g01112 391 PANTHER EXPANSIN 149 390 - -
Blo01g01112 391 PRINTS Expansin signature 308 329 IPR002963 GO:0009664
Blo01g01112 391 PRINTS Expansin signature 372 388 IPR002963 GO:0009664
Blo01g01112 391 PRINTS Expansin signature 343 364 IPR002963 GO:0009664
Blo01g01112 391 PRINTS Expansin signature 222 233 IPR002963 GO:0009664
Blo01g01112 391 PRINTS Expansin signature 272 285 IPR002963 GO:0009664
Blo01g01112 391 PRINTS Expansin signature 236 246 IPR002963 GO:0009664
Blo01g01112 391 PRINTS Expansin signature 255 272 IPR002963 GO:0009664
Blo01g01112 391 PRINTS Expansin signature 296 308 IPR002963 GO:0009664
Blo01g01112 391 PRINTS Expansin signature 195 209 IPR002963 GO:0009664
Blo01g01112 391 SUPERFAMILY Barwin-like endoglucanases 160 315 IPR036908 -
Blo01g01112 391 Pfam Lytic transglycolase 200 286 IPR009009 -
Blo01g01112 391 Gene3D - 298 389 IPR036749 -
Blo01g01112 391 PANTHER EXPANSIN-A15 149 390 IPR002963 GO:0009664
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo01g01112 Blo07g01176 CCT
Blo01g01112 Blo07g01176 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01112 Blo-Chr1:39657479 Blo13g00819 Blo-Chr13:30934850 2.77E-124 dispersed
Blo18g00256 Blo-Chr18:2728586 Blo01g01112 Blo-Chr1:39657479 2.60E-11 dispersed
Blo02g01140 Blo-Chr2:42778832 Blo01g01112 Blo-Chr1:39657479 8.56E-12 transposed
Blo01g01112 Blo-Chr1:39657479 Blo12g00426 Blo-Chr12:21683742 2.67E-138 wgd
Blo01g01112 Blo-Chr1:39657479 Blo13g01073 Blo-Chr13:32906708 1.78E-138 wgd
Blo01g01112 Blo-Chr1:39657479 Blo13g00884 Blo-Chr13:31385612 6.53E-150 wgd
Blo01g01112 Blo-Chr1:39657479 Blo13g00766 Blo-Chr13:30398246 6.79E-157 wgd
Blo01g01112 Blo-Chr1:39657479 Blo14g00114 Blo-Chr14:820763 3.55E-137 wgd
Blo01g01112 Blo-Chr1:39657479 Blo07g01176 Blo-Chr7:31647090 1.03E-158 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01112 - - twl:119989728 469.159