Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01133 ATGGGCGAAGATAATAGGAAATATGAATCAGATACTGGAGGACATAAGAAAGAGCCGAGAATGCATGGGTGCTCTACATGTGGGAAGGAATTCAAGGTGTTGACGAGATCCAGTAGCATTAGACTTATGTTTTTGGATTTGAACTTGAGGCTGTTGGAGAATGATTTGAAGATTTTGTTTGGAGAAAAGGCTGCGAAAGTTGATCTTTGTGTGGGGAAGAGTTGCCTTCTTTTGCGTTTTTCTGATGGTTCATTTACTACGAGTTTTATTACGACCATTGGCATTGATTTCAAGATTAGGACCATAGAGCTAGATGGGAAAAGAATCAAGTTGCAAATTTGGGATACTGCTGGTCAGGAGCGGTTTAGAACTATCACAACTGCTTATTATCGTGGAGCCATGGGTATTTTGCTAGTGTACGATGTCACTGATGAGTCATCTTTCAACAGTAATTACTTTCTTTATCTTAATTCTAGAGTTTCAAATCTGAATCTTTTTACCATGAACTGGATTCGTAATATTGAACAGCATGCCTCTGACAATGTCAACAAGATATTGGTGGGTAACAAAGCGGACATGGATGAGAGCAAAAGGGCTGTTCCTACCTCAAAAGGCCAAGCTCTTGCGGATGAATATGGCATAAAATTCTTTGAGACTAGTGCTAAGACTAATTTGAATGTGGAAGAAGTTTTCTTCTCTGTAGCCAGGGACATTAAACAAAGACTTGCAGATACCGACTCAAAAGCAGAGTTTGGATTGGCTGGGATGGATATTCTTTCAAAAGCTGCATTAAATGAGGGACTGAGTAACTATGTGTTGGTTGTTTATCGCCATCTTGTTGCCACTGCTGTTGTTGCTCCTTTTGCCGTCATCTTTGACAGGAAAGTTAGGCCGAAAATGACACTATCGGTGTTCATCAAGATAGTGTTTCTCAGTTTGCTGGAGCCTGTTATTGATCAAAATTTATATTTCATGGGGATGAAGTATACGACAGCAACATATGCAGCTGCTATGTGCAATATTCTTCCAGCCATTACCTTCATAATAGCATGGGCTCTTAGGCTAGAGAAAGTGAAAATCAAATGTCTTAGAAGCCAAGCTAAGATTTTGGGAACTCTAGCAACAGTGGCGGGAGCCATGATGATGACACTGATAAAAGGTCCACTGGTTGAGCTGTTTTGGACAAAAGAGACGGCAAATCCTGATCAACAAAGGGCCGAGACGAGCATTCATAACTCGATAAAGGGAACGATAATGATCACCATTGGCTGCTTCAGCTGGGCCTGTTTCATGAACCTGCAAGCTATCACTCTTAAAACATACCCGGCCGAGCTTTCTCTAACAGCCTGGATTTGCCTATTGGGATCACTGGAAGGAACAGCTGTGGCGCTTGTAATGGAGCGCGGGAACAATGCTGTCTGGTCTATAAAATGGGGATCAAAATTACTTGCTCCTGTTTACAGTGGTATATTCTGTTCTGGATTAGCTTACTACATTCAAGGAATAGTGATGAAAGAGCGAGGACCAGTTTTTGTGACAGCTTTCAGCCCTCTGTCCATGGTTATAGTTGCTGTGATGAGCACATTTATACTGGCTGAACGCCTGTATCTTGGAAGAATACTTGGCGCCCTTGTAATCATCGGAGGCCTGTATCTCGTAATCTGGGGAAAAGGTAAAGATGATGATGAAGCCTCTGCGTCAAAATCTTTACCCACAAAACAGATTACTGATTCATTTGAAAATGGAAAAGGAAACTTCAATCATGAGATCATACGGACTGAGGAATTTGATGGAGGAGAAGTGGGTGACAGGAAAAACTCCATTGCAGTTTAG 1833 41.63 MGEDNRKYESDTGGHKKEPRMHGCSTCGKEFKVLTRSSSIRLMFLDLNLRLLENDLKILFGEKAAKVDLCVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNSNYFLYLNSRVSNLNLFTMNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSVARDIKQRLADTDSKAEFGLAGMDILSKAALNEGLSNYVLVVYRHLVATAVVAPFAVIFDRKVRPKMTLSVFIKIVFLSLLEPVIDQNLYFMGMKYTTATYAAAMCNILPAITFIIAWALRLEKVKIKCLRSQAKILGTLATVAGAMMMTLIKGPLVELFWTKETANPDQQRAETSIHNSIKGTIMITIGCFSWACFMNLQAITLKTYPAELSLTAWICLLGSLEGTAVALVMERGNNAVWSIKWGSKLLAPVYSGIFCSGLAYYIQGIVMKERGPVFVTAFSPLSMVIVAVMSTFILAERLYLGRILGALVIIGGLYLVIWGKGKDDDEASASKSLPTKQITDSFENGKGNFNHEIIRTEEFDGGEVGDRKNSIAV 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 40830875 40838909 + BLOR01133 Blo01g01133 55573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01133 610 PRINTS Transforming protein P21 ras signature 84 100 - -
Blo01g01133 610 PRINTS Transforming protein P21 ras signature 61 82 - -
Blo01g01133 610 PRINTS Transforming protein P21 ras signature 180 193 - -
Blo01g01133 610 PRINTS Transforming protein P21 ras signature 102 124 - -
Blo01g01133 610 PRINTS Transforming protein P21 ras signature 216 238 - -
Blo01g01133 610 SMART ras_sub_4 71 241 - -
Blo01g01133 610 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 70 242 IPR027417 -
Blo01g01133 610 ProSiteProfiles small GTPase Rho family profile. 47 243 - -
Blo01g01133 610 SUPERFAMILY Multidrug resistance efflux transporter EmrE 276 384 - -
Blo01g01133 610 ProSiteProfiles small GTPase Rab1 family profile. 53 270 - -
Blo01g01133 610 SMART ran_sub_2 68 296 - -
Blo01g01133 610 Pfam Ras family 69 239 IPR001806 GO:0003924|GO:0005525
Blo01g01133 610 MobiDBLite consensus disorder prediction 1 23 - -
Blo01g01133 610 ProSiteProfiles small GTPase Ras family profile. 54 419 IPR001806 GO:0003924|GO:0005525
Blo01g01133 610 SUPERFAMILY Multidrug resistance efflux transporter EmrE 472 559 - -
Blo01g01133 610 TIGRFAM small_GTP: small GTP-binding protein domain 71 231 IPR005225 GO:0005525
Blo01g01133 610 SMART rho_sub_3 68 241 IPR001806 GO:0003924|GO:0005525
Blo01g01133 610 Gene3D - 64 252 IPR027417 -
Blo01g01133 610 Pfam EamA-like transporter family 415 554 IPR000620 GO:0016020|GO:0016021
Blo01g01133 610 Pfam EamA-like transporter family 254 383 IPR000620 GO:0016020|GO:0016021
Blo01g01133 610 PANTHER WAT1-RELATED PROTEIN 249 566 IPR030184 GO:0016021|GO:0022857
Blo01g01133 610 PANTHER WAT1-RELATED PROTEIN 249 566 - -
Blo01g01133 610 SMART rab_sub_5 68 241 - -
Blo01g01133 610 CDD Rab8_Rab10_Rab13_like 71 241 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01133 Blo-Chr1:40830875 Blo04g00287 Blo-Chr4:2192645 2.15E-127 dispersed
Blo02g01034 Blo-Chr2:40133301 Blo01g01133 Blo-Chr1:40830875 6.80E-37 dispersed
Blo03g00425 Blo-Chr3:12686540 Blo01g01133 Blo-Chr1:40830875 2.66E-33 dispersed
Blo12g00672 Blo-Chr12:25021362 Blo01g01133 Blo-Chr1:40830875 1.17E-99 transposed
Blo01g01133 Blo-Chr1:40830875 Blo12g00437 Blo-Chr12:21928255 3.00E-97 wgd
Blo01g01133 Blo-Chr1:40830875 Blo13g00756 Blo-Chr13:30324989 3.73E-138 wgd
Blo01g01133 Blo-Chr1:40830875 Blo03g01246 Blo-Chr3:38692342 4.10E-94 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01133 - - csv:101217902 518.464