Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01242 ATGGAAATCCTGAGCGAAAGAGCAGCGTTTATTAGAGACTCGCTGCAAAAGAGCCAAACTATCACCAATAACATGGTCGACATTCTTGGCTCCTTCGACCACCGCCTCTCCGCCCTTGAAACCGCCATGCGTCCCACTCAGATAAGAACCCACTCAATCCGGAAGGCTCATGAGAATATTGATAAGACGGTCAAGGCTGCAGAGGTTATATTGGCGCAGTTCGACTTGTCTCGCAAGGCAGAGGCTAAAATATTAAGAGGGCCGCATGAGGACCTTGAAAGTTACTTGGAAGCCATTGACCAATTGAGAAGCATTATTCGCTTTTTTGGTGGCAATAAAAATTTTAAGAGTAGTGATTCAGTGCTTAACCACACAAACAACTTGCTTGCAAAAGCCATTTCTAAGCTTGAAGATGAATTCAGGCAGCTACTGACGAACTACAGTAAGCCGGTTGAACCTGATCGCCTATTTGATTGCCTTCCCAACTCTCTACGCCCATCATCAGAAACACCCGGGCAACAAAGCAATGCTACTAGCAAGTGTAGTTCTATGCACCAAAGCAAAAGATTGGAAACTGCTGTGTACACACCTCTGTCCTTAATTCCTAATAGAGTTGTGCCGCTATTGCATGATTTAGCCCAGCAAATGGTTCAGGCTGGCCATCAACAACAGCTGCTGAGGATATACAGGGATACTCGTGCTTCGGTTTTGGAACAAAGTCTCAGAAAACTAGGCGTGGAGAGACTTAGTAAAGACGACGTCCAGAAAATGCAGTGGGAGGCTTTGGAGGCTAAGATTGGGAATTGGATTCATCACATGCGTATTGCGGTCAAGCTGTTGTTTTCAGGGGAAAGAAAAATATGCGATCAAATATTTGAGGGTGTTGATTCTCTCAGGGATCAATGCTTTGCGGAAGTGACTGCAAACAGTGTGGCTGTGTTGCTAAGTTTCGGAGAGGCAATTGCGAAAAGCAAGAGATCGCCAGAAAAACTATTTGTTCTCTTAGACATGTATGAGATAATGAGGGAAGTACAATCAGAGATTGAAACACTATTTGGAAACAAAGCAAGCCTTGAAATGAGGGAGGCTGCATTGAGTTTGACAAAGCGTCTGGCTCAGACAGCCCAGGAAACTTTCGCTGACTTTGAAGAAGCAGTAGAAAAGGATGCAACAAAAACTGCTATTCTTGATGGAACTGTCCATCCCTTGACCAGCTACGTGATAAACTATGTTAAATTTTTATTCGATTATCAGTCCACTTTGAAGCTACTTTTTGAAGACTTCGATAATAGTGATCCAGATGTTCAGTTAGCAAAGGTAACTACAAGGATTATGCTTGGTCTTCTTAATAATCTGGATGCGAAATCTAAGCAGTATAAAGATCAGGCATTGACTCAATTATTTCTCATGAACAACATTCACTATATAGTGAGATCTGTGAGAAGGTCTGAGGCAAAGGATGTGTTGGGAGATGATTGGGTACAAATACACCGAAGAATTGTCCAACAACATGCTAATCAGTATAAGAGAGTTTCATGGGCAAAGATTTTGCAGTGCCTCACTATTCAGGGCCTAAATCAGTCAGGCGGAGGCGATGCGGGCAGCAGTGGACTTTCAAGAGCAATGGTGAAAGAAAGGTTTAAGACATTTAATATTCAATTCGAAGAGCTTCATCAAAGACAATCTCAGTGGACAGTTCCTGATAGCGAGTTGCGTGAATCGTTGAGGCTGGCCGTTGCTGAAGTCCTCTTGCCTGCATACAGATCGTTCGTCAAACGTTTCGGGCCAATGATCGAGAATGGGAAAAATCCCCAGAAATACATCAGATATTCTCCTGAGAATCTGGAACGGATGTTGAATGACTTTTTTGAGGCAAAGAAATTGGCGTTCAAGCGTGGGAAGGCAACGGTGGAAGGTGTGCAAGCCGCTGCGGTGGATGATGAGCAACTCGCGGCGGTGGTCGATGAGCAACCTGCGGCTATGCAACACGAAGACACCGCCGAGGATGGAGAAACCGTTGCACACTTGCAAAGGCAAGCTGAACCCGAGCTTTAA 2055 44.48 MEILSERAAFIRDSLQKSQTITNNMVDILGSFDHRLSALETAMRPTQIRTHSIRKAHENIDKTVKAAEVILAQFDLSRKAEAKILRGPHEDLESYLEAIDQLRSIIRFFGGNKNFKSSDSVLNHTNNLLAKAISKLEDEFRQLLTNYSKPVEPDRLFDCLPNSLRPSSETPGQQSNATSKCSSMHQSKRLETAVYTPLSLIPNRVVPLLHDLAQQMVQAGHQQQLLRIYRDTRASVLEQSLRKLGVERLSKDDVQKMQWEALEAKIGNWIHHMRIAVKLLFSGERKICDQIFEGVDSLRDQCFAEVTANSVAVLLSFGEAIAKSKRSPEKLFVLLDMYEIMREVQSEIETLFGNKASLEMREAALSLTKRLAQTAQETFADFEEAVEKDATKTAILDGTVHPLTSYVINYVKFLFDYQSTLKLLFEDFDNSDPDVQLAKVTTRIMLGLLNNLDAKSKQYKDQALTQLFLMNNIHYIVRSVRRSEAKDVLGDDWVQIHRRIVQQHANQYKRVSWAKILQCLTIQGLNQSGGGDAGSSGLSRAMVKERFKTFNIQFEELHQRQSQWTVPDSELRESLRLAVAEVLLPAYRSFVKRFGPMIENGKNPQKYIRYSPENLERMLNDFFEAKKLAFKRGKATVEGVQAAAVDDEQLAAVVDEQPAAMQHEDTAEDGETVAHLQRQAEPEL 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 47138045 47143631 + BLOR01242 Blo01g01242 55682

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01242 684 MobiDBLite consensus disorder prediction 159 184 - -
Blo01g01242 684 PANTHER EXOCYST COMPLEX PROTEIN EXO70 30 629 IPR004140 GO:0000145|GO:0006887
Blo01g01242 684 Coils Coil 341 361 - -
Blo01g01242 684 Pfam Exo70 exocyst complex subunit 268 621 IPR046364 GO:0000145|GO:0005546|GO:0006887
Blo01g01242 684 Coils Coil 126 146 - -
Blo01g01242 684 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 30 629 - -
Blo01g01242 684 SUPERFAMILY Cullin repeat-like 70 624 IPR016159 -
Blo01g01242 684 MobiDBLite consensus disorder prediction 661 684 - -
Blo01g01242 684 MobiDBLite consensus disorder prediction 163 184 - -
Blo01g01242 684 Gene3D Exocyst complex component Exo70 68 632 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01242 K07195 EXOC7, EXO70; exocyst complex component 7 - twl:119990264 1043.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01242 Blo-Chr1:47138045 Blo13g00674 Blo-Chr13:29476600 0 dispersed
Blo01g01340 Blo-Chr1:51014878 Blo01g01242 Blo-Chr1:47138045 7.40E-66 dispersed
Blo12g01102 Blo-Chr12:28707243 Blo01g01242 Blo-Chr1:47138045 1.99E-69 dispersed
Blo13g00222 Blo-Chr13:9402270 Blo01g01242 Blo-Chr1:47138045 2.77E-24 dispersed
Blo01g01242 Blo-Chr1:47138045 Blo06g00756 Blo-Chr6:30796856 2.34E-117 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g903 Blo01g01242 . . . . . . . . . . Cma07g00826 Car03g01010 Car07g00813 Sed14g0274 Cpe10g00315 . Bhi03g01779 Tan03g1260 Cmetu08g1948 . Hepe04g1072 . . . . . . . . . . . Cone13ag1144 Cone19ag1123 Lsi01g01185 Csa06g02721 Chy08g00976 . . . . . . . Bma01g02005 . . Cmo03g01110 Cmo07g00855 . . . . . Cpe19g00500 . . . . . . . . . . . . . . . . . Cme08g01155
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo13g00674 . 4 642 EXO70 exocyst subunit family AT5G03540 75.8 5.6e-277 950.3
Blo01g01242 . 1 628 EXO70 exocyst subunit family AT5G03540 72.3 6.0e-263 903.7
Blo01g01242 . 1 626 EXO70 exocyst subunit family AT5G52340 79.2 1.3e-286 982.2
Blo13g00674 . 6 642 EXO70 exocyst subunit family AT5G52340 73.3 2.4e-269 924.9
Blo01g01242 . 139 628 EXO70 exocyst subunit family AT5G52350 61.8 2.6e-169 592.4
Blo13g00674 . 141 636 EXO70 exocyst subunit family AT5G52350 58.5 7.1e-159 557.8
Blo14g00063 . 1 630 EXO70 exocyst subunit family AT5G58430 66.7 1.4e-250 862.4
Blo14g00063 . 1 629 EXO70 exocyst subunit family AT1G07000 50.2 9.8e-172 600.5
Blo01g00176 . 54 647 EXO70 exocyst subunit family AT5G13150 50.3 2.0e-162 569.7
Blo06g00756 BCT 8 608 EXO70 exocyst subunit family AT1G72470 63.6 3.8e-214 741.5
Blo05g00033 BCT 7 607 EXO70 exocyst subunit family AT1G72470 61.0 1.8e-200 696.0
Blo06g00756 BCT 9 606 EXO70 exocyst subunit family AT1G54090 62.2 6.5e-211 730.7
Blo05g00033 BCT 7 605 EXO70 exocyst subunit family AT1G54090 59.8 3.8e-203 704.9
Blo06g00756 BCT 2 607 EXO70 exocyst subunit family AT3G14090 62.7 2.3e-216 748.8
Blo05g00033 BCT 2 606 EXO70 exocyst subunit family AT3G14090 61.0 1.7e-206 716.1
Blo16g00265 . 13 648 EXO70 exocyst subunit family AT5G50380 60.9 2.4e-222 768.8
Blo04g01171 . 13 650 EXO70 exocyst subunit family AT5G50380 60.4 3.0e-217 751.9
Blo15g00211 . 13 639 EXO70 exocyst subunit family AT5G50380 56.7 2.2e-199 692.6
Blo12g01102 . 3 674 EXO70 exocyst subunit family AT4G31540 69.3 1.5e-280 962.2
Blo01g01340 . 1 666 EXO70 exocyst subunit family AT4G31540 69.7 6.8e-278 953.4
Blo04g00295 . 42 633 EXO70 exocyst subunit family AT3G55150 50.5 4.8e-161 565.1
Blo07g01191 . 32 609 EXO70 exocyst subunit family AT3G55150 50.7 3.5e-159 558.9
Blo14g00136 BCT 10 602 EXO70 exocyst subunit family AT3G55150 50.5 8.0e-156 547.7
Blo07g01191 . 32 609 EXO70 exocyst subunit family AT2G39380 51.5 9.4e-165 577.4
Blo04g00295 . 22 633 EXO70 exocyst subunit family AT2G39380 50.4 1.6e-164 576.6
Blo07g01191 . 1 615 EXO70 exocyst subunit family AT3G09520 55.2 6.6e-179 624.4
Blo09g00560 . 1 617 EXO70 exocyst subunit family AT3G09520 52.7 2.0e-167 586.3
Blo14g00136 BCT 11 603 EXO70 exocyst subunit family AT5G59730 53.1 2.0e-167 586.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001390 3 2 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 5 4 2 3 1 2 2 2 2 2 4 2 2 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01242 Blo_Chr01 FPKM 27.499279 34.302322 29.174601 28.977613 27.239431 23.591351 26.394176 45.308598 44.708046 45.920292