Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01249 ATGAAAGATCCAGTTACGGTCTCTTCCGGCATAACCTACGACCGACAAAGCATCGAGGAGTGGCTGTATTCGAACAAAAACACTACATGCCCGGTGACAAGGCAACCCGTTTCTGACTCTGATTTAACTCCGAACCATACTCTCCGACGACTTATTCAAGCCTGGTGTACCATCAACACCTCCAATGGCGTCCAAAGAATTCCCACTCCAAAACCTCCGATCACCAATATACAGATTGTAAAACTCCTCAATGAAGCAAGATCTCCACTTATGCAAGTGAAATGTCTTCGAAGGCTCCAGTCAATCGCCAGCGAGAATGAGATGAACAAACGCTGCATTGTTTCTGCCGGAGCAGTCGAATTCTTAGCTGGAATCGTGAAAAACTCCATTGATGCAGCACCACAAGAAGGTTTAAACGATAGGTTTGACTATTCACAAGTAAACGATGAGGCCTTGAGTCTTCTTCATAACCTCCATATTTCCGAAGCCCGGCTGAAAGCTCTGGCCTTAGACAATGGCGGATTCATAGAAACCCTAACGAAAGCCATGCAAACTGGAAGCTACAAGTCTAGAGCTTTCGCCGTGATGATATCAAAATCCATTTTTGAAGCCTCCGACCAAATACAGCTGGTCAAATCAAAATCCGAACTCTTCACAGAAATAGTTAAAATTCTGCAAGATCATGTTTCCCACCAAGCCTCAAAATCTGCTTTACAGTTGCTAATCCTTCTTTGTCCATGGGGAAGAAATCGAGTTAAGGTCGTTCATGCAGGAGGAGTTTCAGTTATAATCGAGCTTCTTCTAAATTCGCCAGAGAAGAGAGTATTGGAGATGGCACTCGTGGCGCTGGACCTTCTCTGCGGTTGTGCAGAGGGGCGAGCGGAGCTACTGAACCACAGTGGAGGGATCGCCGTCGTGGGGCAGAAGATTCTGAGCGTTTCTTCTACCGGAAGCGAGAGAGCGGTGAGAATACTGTATTCAATATCGAAATACTCAGCAACGCCATTTGTGGTTAAAGAAATGCTGCATCTGGGAGTGGTGGAGAAGCTTTGCTTGTTGCTGCAGGTGGAGAGTGGGAGCAAGGTGAAGGAGAGAGCCAGAGAGATTCTTAAAATGCACAGTCGGCAATGGAGGAACTCCCCTTGTATACACCTAAATTTGCTTTATTCATTCCCATCTTGA 1182 46.11 MKDPVTVSSGITYDRQSIEEWLYSNKNTTCPVTRQPVSDSDLTPNHTLRRLIQAWCTINTSNGVQRIPTPKPPITNIQIVKLLNEARSPLMQVKCLRRLQSIASENEMNKRCIVSAGAVEFLAGIVKNSIDAAPQEGLNDRFDYSQVNDEALSLLHNLHISEARLKALALDNGGFIETLTKAMQTGSYKSRAFAVMISKSIFEASDQIQLVKSKSELFTEIVKILQDHVSHQASKSALQLLILLCPWGRNRVKVVHAGGVSVIIELLLNSPEKRVLEMALVALDLLCGCAEGRAELLNHSGGIAVVGQKILSVSSTGSERAVRILYSISKYSATPFVVKEMLHLGVVEKLCLLLQVESGSKVKERAREILKMHSRQWRNSPCIHLNLLYSFPS 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 47405528 47406709 + BLOR01249 Blo01g01249 55689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01249 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 66 IPR013083 -
Blo01g01249 393 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 1 392 - -
Blo01g01249 393 PANTHER WDSAM1 PROTEIN 1 392 IPR045185 GO:0061630
Blo01g01249 393 Pfam U-box domain 1 57 IPR003613 GO:0004842|GO:0016567
Blo01g01249 393 ProSiteProfiles U-box domain profile. 1 62 IPR003613 GO:0004842|GO:0016567
Blo01g01249 393 SMART Ubox_2 1 55 IPR003613 GO:0004842|GO:0016567
Blo01g01249 393 SUPERFAMILY ARM repeat 79 363 IPR016024 -
Blo01g01249 393 SUPERFAMILY RING/U-box 1 59 - -
Blo01g01249 393 Gene3D - 77 381 IPR011989 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01249 Blo-Chr1:47405528 Blo14g00246 Blo-Chr14:2197355 8.10E-149 dispersed
Blo13g00506 Blo-Chr13:26420366 Blo01g01249 Blo-Chr1:47405528 1.58E-06 transposed
Blo01g01249 Blo-Chr1:47405528 Blo07g01301 Blo-Chr7:33251332 0 wgd
Blo01g01249 Blo-Chr1:47405528 Blo08g00062 Blo-Chr8:534531 5.27E-90 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01249 - - tcc:18598414 499.975