Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01251 ATGAACAACACAGACTACACCGGCCTTCTCCCCACCAGCAACATCGGTGGCATCGGCTATGGAATCGGGGTCTCTGTCGGTCTTCTCCTCCTCATCACCACCATCGTCCTCGCTTCCTACTACTGCTCCCGAACAGCTAACAGGACGCCTCCTTCGACCGGCATTAGGAGGACGAGGACGAGGACGATCCAGCAGTTTAGGGGAAGCGAGGAGGTTGTGATCGAAATAGGACTTAGCGAGGAAACGATCGAAAGCTACCCGAAGGTGGTGTTTTCAGAGGCGAAGATGGAGAGGAAAGAGGCCATAGCTACGAGCTGCTCCATCTGTTTAGCTGATTATAGAAGCTCCGACGTGCTCCGGCAATTGCCTGGTTGTCACCATTTTTTCCACCTGAAATGTGTTGATCCGTGGCTGAGGCTTAATCCATCTTGTCCACTCTGTAGAACGTCCCCGTATCCGACTCCACTTTCTACTCCTCTAGCGGAGGTTGTTCCATTAGCAAATAGGAAAGCTGACTACGATGTCAAAGTTAATGGCGTAGAGATATCTCCTAATCCAATTGCTAGGGGCAATCCAGCTACCTTCAGCATCTCTGCAACGGCAGGCAGAGACATAGATGGAGGAAAGCTGGTTATAGACGTTTCATATTTCGGATGGCACATTCACAGTGAAACCCACGAGCTTTGCTCTGAAACGTCCTGCCCTGTTTCGACTGGCGATTTTGTCGTCGCACACTCTCAAGTTTTACCAGGATATACTCCACCTGTGAGTTCTCCATCCATCTCAGTTATAGACCTTTTCAATCTTTTTTATCAAGGCTCTTACTCGCTTACAATGACTATGTTCGACGGAGACAAGAAGAAACTTACATGCGTCGGCTTTGGTTTCGACATCGGATTTGCATCATCAGTCTCTGATACATAA 924 48.92 MNNTDYTGLLPTSNIGGIGYGIGVSVGLLLLITTIVLASYYCSRTANRTPPSTGIRRTRTRTIQQFRGSEEVVIEIGLSEETIESYPKVVFSEAKMERKEAIATSCSICLADYRSSDVLRQLPGCHHFFHLKCVDPWLRLNPSCPLCRTSPYPTPLSTPLAEVVPLANRKADYDVKVNGVEISPNPIARGNPATFSISATAGRDIDGGKLVIDVSYFGWHIHSETHELCSETSCPVSTGDFVVAHSQVLPGYTPPVSSPSISVIDLFNLFYQGSYSLTMTMFDGDKKKLTCVGFGFDIGFASSVSDT 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 47525130 47528129 + BLOR01251 Blo01g01251 55691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01251 307 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Blo01g01251 307 PANTHER RING-H2 FINGER PROTEIN ATL70-LIKE 5 170 - -
Blo01g01251 307 CDD RING-H2_PA-TM-RING 106 148 - -
Blo01g01251 307 Pfam ML domain 171 295 IPR003172 -
Blo01g01251 307 SUPERFAMILY RING/U-box 82 154 - -
Blo01g01251 307 Gene3D - 167 300 - -
Blo01g01251 307 SUPERFAMILY E set domains 172 298 IPR014756 -
Blo01g01251 307 SMART ring_2 106 147 IPR001841 -
Blo01g01251 307 CDD PG-PI_TP 168 296 IPR033917 GO:0032366
Blo01g01251 307 SMART pgtp_13 172 296 IPR003172 -
Blo01g01251 307 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 170 IPR045899 -
Blo01g01251 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 152 IPR013083 -
Blo01g01251 307 Pfam Ring finger domain 105 148 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00215 Blo-Chr1:2798147 Blo01g01251 Blo-Chr1:47525130 1.62E-33 dispersed
Blo01g01251 Blo-Chr1:47525130 Blo02g00346 Blo-Chr2:3620227 2.30E-32 dispersed
Blo05g00700 Blo-Chr5:23832693 Blo01g01251 Blo-Chr1:47525130 1.91E-15 dispersed
Blo02g00328 Blo-Chr2:3317465 Blo01g01251 Blo-Chr1:47525130 1.42E-19 transposed
Blo03g01337 Blo-Chr3:39710739 Blo01g01251 Blo-Chr1:47525130 1.30E-32 transposed
Blo04g00739 Blo-Chr4:6913514 Blo01g01251 Blo-Chr1:47525130 3.85E-15 transposed
Blo01g01251 Blo-Chr1:47525130 Blo12g00542 Blo-Chr12:23389209 9.96E-143 wgd
Blo01g01251 Blo-Chr1:47525130 Blo07g01297 Blo-Chr7:33215697 8.93E-47 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01251 - - gmx:100306050 192.2