Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Blo01g01251 | ATGAACAACACAGACTACACCGGCCTTCTCCCCACCAGCAACATCGGTGGCATCGGCTATGGAATCGGGGTCTCTGTCGGTCTTCTCCTCCTCATCACCACCATCGTCCTCGCTTCCTACTACTGCTCCCGAACAGCTAACAGGACGCCTCCTTCGACCGGCATTAGGAGGACGAGGACGAGGACGATCCAGCAGTTTAGGGGAAGCGAGGAGGTTGTGATCGAAATAGGACTTAGCGAGGAAACGATCGAAAGCTACCCGAAGGTGGTGTTTTCAGAGGCGAAGATGGAGAGGAAAGAGGCCATAGCTACGAGCTGCTCCATCTGTTTAGCTGATTATAGAAGCTCCGACGTGCTCCGGCAATTGCCTGGTTGTCACCATTTTTTCCACCTGAAATGTGTTGATCCGTGGCTGAGGCTTAATCCATCTTGTCCACTCTGTAGAACGTCCCCGTATCCGACTCCACTTTCTACTCCTCTAGCGGAGGTTGTTCCATTAGCAAATAGGAAAGCTGACTACGATGTCAAAGTTAATGGCGTAGAGATATCTCCTAATCCAATTGCTAGGGGCAATCCAGCTACCTTCAGCATCTCTGCAACGGCAGGCAGAGACATAGATGGAGGAAAGCTGGTTATAGACGTTTCATATTTCGGATGGCACATTCACAGTGAAACCCACGAGCTTTGCTCTGAAACGTCCTGCCCTGTTTCGACTGGCGATTTTGTCGTCGCACACTCTCAAGTTTTACCAGGATATACTCCACCTGTGAGTTCTCCATCCATCTCAGTTATAGACCTTTTCAATCTTTTTTATCAAGGCTCTTACTCGCTTACAATGACTATGTTCGACGGAGACAAGAAGAAACTTACATGCGTCGGCTTTGGTTTCGACATCGGATTTGCATCATCAGTCTCTGATACATAA | 924 | 48.92 | MNNTDYTGLLPTSNIGGIGYGIGVSVGLLLLITTIVLASYYCSRTANRTPPSTGIRRTRTRTIQQFRGSEEVVIEIGLSEETIESYPKVVFSEAKMERKEAIATSCSICLADYRSSDVLRQLPGCHHFFHLKCVDPWLRLNPSCPLCRTSPYPTPLSTPLAEVVPLANRKADYDVKVNGVEISPNPIARGNPATFSISATAGRDIDGGKLVIDVSYFGWHIHSETHELCSETSCPVSTGDFVVAHSQVLPGYTPPVSSPSISVIDLFNLFYQGSYSLTMTMFDGDKKKLTCVGFGFDIGFASSVSDT | 307 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 47525130 | 47528129 | + | BLOR01251 | Blo01g01251 | 55691 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Blo01g01251 | 307 | ProSiteProfiles | Zinc finger RING-type profile. | 106 | 148 | IPR001841 | - | |
Blo01g01251 | 307 | PANTHER | RING-H2 FINGER PROTEIN ATL70-LIKE | 5 | 170 | - | - | |
Blo01g01251 | 307 | CDD | RING-H2_PA-TM-RING | 106 | 148 | - | - | |
Blo01g01251 | 307 | Pfam | ML domain | 171 | 295 | IPR003172 | - | |
Blo01g01251 | 307 | SUPERFAMILY | RING/U-box | 82 | 154 | - | - | |
Blo01g01251 | 307 | Gene3D | - | 167 | 300 | - | - | |
Blo01g01251 | 307 | SUPERFAMILY | E set domains | 172 | 298 | IPR014756 | - | |
Blo01g01251 | 307 | SMART | ring_2 | 106 | 147 | IPR001841 | - | |
Blo01g01251 | 307 | CDD | PG-PI_TP | 168 | 296 | IPR033917 | GO:0032366 | |
Blo01g01251 | 307 | SMART | pgtp_13 | 172 | 296 | IPR003172 | - | |
Blo01g01251 | 307 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 5 | 170 | IPR045899 | - | |
Blo01g01251 | 307 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 65 | 152 | IPR013083 | - | |
Blo01g01251 | 307 | Pfam | Ring finger domain | 105 | 148 | IPR001841 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Blo01g00215 | Blo-Chr1:2798147 | Blo01g01251 | Blo-Chr1:47525130 | 1.62E-33 | dispersed | |
Blo01g01251 | Blo-Chr1:47525130 | Blo02g00346 | Blo-Chr2:3620227 | 2.30E-32 | dispersed | |
Blo05g00700 | Blo-Chr5:23832693 | Blo01g01251 | Blo-Chr1:47525130 | 1.91E-15 | dispersed | |
Blo02g00328 | Blo-Chr2:3317465 | Blo01g01251 | Blo-Chr1:47525130 | 1.42E-19 | transposed | |
Blo03g01337 | Blo-Chr3:39710739 | Blo01g01251 | Blo-Chr1:47525130 | 1.30E-32 | transposed | |
Blo04g00739 | Blo-Chr4:6913514 | Blo01g01251 | Blo-Chr1:47525130 | 3.85E-15 | transposed | |
Blo01g01251 | Blo-Chr1:47525130 | Blo12g00542 | Blo-Chr12:23389209 | 9.96E-143 | wgd | |
Blo01g01251 | Blo-Chr1:47525130 | Blo07g01297 | Blo-Chr7:33215697 | 8.93E-47 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Blo01g01251 | - | - | gmx:100306050 | 192.2 |