Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01298 ATGATTAGCGGTGGATCACCCTTAGACCATGGCGGTGTTTCTCAGACCGCGGTGGTGTTTCTTAGACCTTGGCGGTGTTTTGCAGATAGTGGAGGTCTTTCTCAGACTGCAACGGATCGAAATACAAGGATTTTGACGGCGATGTTTGAAAAGGCAGCATCTATATTGAGTGCTCATGATCCTCCAGTGGTTTTAGCAAAAGTTGATGCCAATGAAGAAGCGAACAAAGGACTTGCCAGTGAATTCGAAGTTAAGGGTTTTCCCACTCTAAAGATTCTGAGAAATGGAGGAAAGACTGTTCAAGAATACAAAGGTCCTCGTGAAGCAGATGGCATTGTTGAATATTTAAAGAAACAAAGTGGGCCCGCGTCCGCTGAAATAAATTCTGTGGAAAGTGCTAGCAATATAATATCGGACAAGAAAATTGTCATTGTTGGTATATTCCCAAAATTTTCAGGAGAAGAGTTTGAGAACTACACCGCCCTAGCTGAGAAATTGCGTTCTGACTATGAATTTGCTCATACTTTAAATGCCAAAGTACTTCCGCGGGGGGAAACATCTGTAACTGGTCCCTCAATTAGGTTGTTCAAGCCATTTGATGAATTATTTGTTGATTTTGAGGAATTTGATGTAAATGCTTTGGAGAAGTTCGTTGGAGAATCTAGTGTGCCTGTTGTGACCATCTTCAATAAGGATCCTATGAATCACCCTTTTGTTATCAAGTTCTTCAATAATGCCAATGCAAAGGCCATGCTGTTCGTTAACTTCAGTGATGATGTGGCTGAATCTTTCAAGTCCAAATACCATGAAGTTGCTGAGCAATTTAAAGGAGAGGGCATAAGCTTTCTGATTGGAGACATTGAGTCTAGTCAAGGTGCCTTCCAGTACTTTGGGCTTAAAGATGATCAAGTCCCTCTTATCATCATACAAAATAATGACGGACAAAAATTCTTGAAACCAAATTTGGATCCCAATTCCATTGGGTCTTGGTTGAAGGAATACAAGGAGGGCAAATTGTCAGCATTCAAAAAGTCGGAACCCCTTCCTGAGCATAACAATGAACCTGTAAAAGTGGTTGTTGCTGATAGCCTCCAAGACATAGTATTTAACTCTGGAAAAAATGTTCTTCTGGAGTTTTACGCTCCTTGGTGTGGGCATTGCAAAAAATTGGCTCCCATCTTGGATGAAGTCGCGGTCTCATTGGAAAATGATAATGATATCATAATTGCTAAGTTTGATGCTACTGCAAATGACTACCCAAGTGACACCTTTGATGTCAAGGGCTACCCTACCTTGTATTTTAAGTCAGCTAGTGGAAAGCTGATGCAGTATGAGGGGGAGAGAAGCAAGGAAGATATCATAGAATTCATTGGAAACAACCGAGATAAAGCTTCCAAGCTCGAGTCGGTGGAAAAGGATGTCCAGGAAGACTCAAAGGATGAGCTATAA 1449 41.27 MISGGSPLDHGGVSQTAVVFLRPWRCFADSGGLSQTATDRNTRILTAMFEKAASILSAHDPPVVLAKVDANEEANKGLASEFEVKGFPTLKILRNGGKTVQEYKGPREADGIVEYLKKQSGPASAEINSVESASNIISDKKIVIVGIFPKFSGEEFENYTALAEKLRSDYEFAHTLNAKVLPRGETSVTGPSIRLFKPFDELFVDFEEFDVNALEKFVGESSVPVVTIFNKDPMNHPFVIKFFNNANAKAMLFVNFSDDVAESFKSKYHEVAEQFKGEGISFLIGDIESSQGAFQYFGLKDDQVPLIIIQNNDGQKFLKPNLDPNSIGSWLKEYKEGKLSAFKKSEPLPEHNNEPVKVVVADSLQDIVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSLENDNDIIIAKFDATANDYPSDTFDVKGYPTLYFKSASGKLMQYEGERSKEDIIEFIGNNRDKASKLESVEKDVQEDSKDEL 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 49781028 49786340 - BLOR01298 Blo01g01298 55738

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01298 482 CDD PDI_b'_family 239 335 - -
Blo01g01298 482 Gene3D Glutaredoxin 226 342 - -
Blo01g01298 482 SUPERFAMILY Thioredoxin-like 221 353 IPR036249 -
Blo01g01298 482 TIGRFAM ER_PDI_fam: protein disulfide isomerase 48 482 IPR005792 GO:0003756
Blo01g01298 482 ProSiteProfiles Thioredoxin domain profile. 342 462 IPR013766 -
Blo01g01298 482 PANTHER PROTEIN DISULFIDE ISOMERASE 44 470 - -
Blo01g01298 482 CDD PDI_a_family 49 116 - -
Blo01g01298 482 CDD PDI_a_PDI_a'_C 355 457 - -
Blo01g01298 482 CDD PDI_b_family 124 218 - -
Blo01g01298 482 TIGRFAM pdi_dom: protein disulfide-isomerase domain 360 459 IPR005788 GO:0003756
Blo01g01298 482 PANTHER PROTEIN DISULFIDE-ISOMERASE 44 470 - -
Blo01g01298 482 PRINTS Thioredoxin family signature 383 392 - -
Blo01g01298 482 PRINTS Thioredoxin family signature 375 383 - -
Blo01g01298 482 PRINTS Thioredoxin family signature 425 436 - -
Blo01g01298 482 SUPERFAMILY Thioredoxin-like 125 224 IPR036249 -
Blo01g01298 482 SUPERFAMILY Thioredoxin-like 322 463 IPR036249 -
Blo01g01298 482 Pfam Thioredoxin 356 457 IPR013766 -
Blo01g01298 482 Pfam Thioredoxin 45 118 IPR013766 -
Blo01g01298 482 Gene3D Glutaredoxin 120 225 - -
Blo01g01298 482 ProSitePatterns Thioredoxin family active site. 376 394 IPR017937 -
Blo01g01298 482 Gene3D Glutaredoxin 343 481 - -
Blo01g01298 482 Gene3D Glutaredoxin 14 119 - -
Blo01g01298 482 SUPERFAMILY Thioredoxin-like 41 122 IPR036249 -
Blo01g01298 482 Pfam Thioredoxin-like domain 148 332 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01298 K09580 PDIA1, P4HB; protein disulfide-isomerase A1 [EC:5.3.4.1] - vvi:100259138 684.485
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g01298 Blo17g00175 CCT
Blo01g01298 Blo18g00181 CCT
Blo01g01298 Blo17g00175 ECH
Blo01g01298 Blo18g00181 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01298 Blo-Chr1:49781028 Blo17g00175 Blo-Chr17:1771070 0 dispersed
Blo01g01298 Blo-Chr1:49781028 Blo18g00181 Blo-Chr18:1722069 8.05E-165 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g250 Blo01g01298 . . . Bpe02g00639 . . Bma01g02074 Cmo04g02483 Cmo15g00679 . Cma09g00787 . . Sed01g3115 Cpe06g00621 . Bhi04g01901 Tan11g1265 Cmetu07g2195 . . . . Cla08g00602 Cam08g1016 Cec08g0606 Cco08g0717 Clacu08g0727 . Cre08g0535 Cone4ag1414 Cone7ag1524 Cone17ag1287 Cone20ag0440 Lsi04g02397 Csa04g01791 . Cme03g00538 Blo17g00175 Blo18g00181 . . Bpe02g01646 Bpe14g00385 Bma01g00810 Bma02g00216 . . Cmo09g00779 . . Car04g02297 Car15g00617 Cpe01g02058 . . . . . . . . Cla11g01541 Cam11g1603 Cec11g1631 Cco11g1633 Clacu11g1759 Cmu11g1576 Cre11g1994 Lsi08g00442 . Chy07g00630 Cme07g00838
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003308 0 2 2 3 3 1 2 1 1 1 1 1 2 2 1 2 1 4 2 1 1 1 1 1 1 1 1 4 2 2 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01298 Blo_Chr01 FPKM 4.721951 4.155413 2.455281 4.111292 5.364749 4.503471 4.497348 14.110852 13.386508 12.686091