Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01307 ATGGGGAGAGGAAAGATCGAGATCAAGAGGATAGAAAACTCAAGTAACAGGCAGGTGACTTACACAAAAAGAAGGACTGGGTTGTTGAAGAAAGCCGGCGAGATTACTACTCTGTGTGATGCTCAAGTTTCCCTCGTTATCTTTGCTGCTACTGGAAAGATGCATGAATTCCATAGCCCTTCCACACCGTTGATTGATATCTTGGATAAGTATCACAAGCAGTCTGGAAAGAGGCTATGGGATGCTAAGCATGAGAACCTTAGCAATGAAATCGATCGAATCAAGAAAGAAAACGACAGCATGCAGATCGAGCTCAGGCACATGAAGGGAGAGGATCTCACCTCCTTGAACTACAAGGAGCTCATGGCCCTCGAAAACGCCCTCGAAAACGGCCTCAACGGTGTTCGTGAGAAGCAGGCTTGTATCCTGAAAACCCATTTTTTAACATCTCATAAACTGAATCTTAGAAAATTCTCATTTTTTTACTTACTGTTTTCGATGCAGTCTGAGTTCATGAAAATGGGAAAAATGCTGGAAGAGGAGAACAAAAGACTCAGCTATGAGCTGTACCAGAAGGAGATGGCAGGGATGGGAGAGAACGTGAGAGAGATGGAAAATGGGTATCAGCAGAGGATGAGGGAGTTCAATGAGCTGCCGTTTTCATTCAGAGTTCAGCCAATTCAGCCTAATCTGCAAGAGAGAATCTAA 708 44.07 MGRGKIEIKRIENSSNRQVTYTKRRTGLLKKAGEITTLCDAQVSLVIFAATGKMHEFHSPSTPLIDILDKYHKQSGKRLWDAKHENLSNEIDRIKKENDSMQIELRHMKGEDLTSLNYKELMALENALENGLNGVREKQACILKTHFLTSHKLNLRKFSFFYLLFSMQSEFMKMGKMLEEENKRLSYELYQKEMAGMGENVREMENGYQQRMREFNELPFSFRVQPIQPNLQERI 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 50189791 50191989 + BLOR01307 Blo01g01307 55747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01307 235 Pfam K-box region 82 188 IPR002487 GO:0003700|GO:0005634|GO:0006355
Blo01g01307 235 PANTHER FLORAL HOMEOTIC PROTEIN PISTILLATA 1 234 - -
Blo01g01307 235 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Blo01g01307 235 ProSiteProfiles K-box domain profile. 84 195 IPR002487 GO:0003700|GO:0005634|GO:0006355
Blo01g01307 235 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 234 - -
Blo01g01307 235 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Blo01g01307 235 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Blo01g01307 235 Coils Coil 77 111 - -
Blo01g01307 235 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Blo01g01307 235 Gene3D - 13 101 IPR036879 GO:0003677|GO:0046983
Blo01g01307 235 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Blo01g01307 235 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Blo01g01307 235 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Blo01g01307 235 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Blo01g01307 235 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01307 Blo-Chr1:50189791 Blo05g00818 Blo-Chr5:29833204 3.73E-40 dispersed
Blo01g01307 Blo-Chr1:50189791 Blo01g01582 Blo-Chr1:55640009 7.28E-43 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11908 PF01486 K-box 1.80E-16 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01307 K09264 - csv:101222239 332.413