Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01311 CACCGCATCGCAGTTATGCAACGACTTCGCGAGACGGACTACGACAACAATTCCGGCTATGATTCCGACATCGGCAGGTGCTTTTCCTGCCACGATGAATTGGACTTGCACGAACCCGGCACTTGCAGAGAGTGTTACGAGGAGGCCAACGACACCAAGGAGGAATTGAAACGCGAGATCGAGGAATTGAAGGCTAAGGTCGCTTTCCTCAGGTTTTCTTCCCCTTTCGATCCCTTCCATCATAAAACTGTCACGGGAACAAAAACCTATGATCCTTCTTTCTCTGATGTCGTTCTAGTTGCCTCCGAAGACCGCTCTGATGGTTACGTCTTCCCCGTACCTGCGCATAAAGCTGTTCTGGTGAGTCGCTCCCCAGTCTTCAAAGCTATGCTAGAAAATGAGATGGAGGAAAGCCGGAGTGGCACCATAAAAATTGGGGATGTATCCTATAATGCTCTTCGTTCCTTCGTCAGTTATATGTATACAGCAGAAGCTTACCTGGACGAACAAATGGCCTTCGATTTATTGGTTTTGGCTGAAAAATACCAAGTGAAGCATCTGAAGGCCTATTGCGAGAAATACCTGGTGTCCAAACTCAACTGGGACAACTCAGTCATGACCTATGCTTTTGCTCACCAGCATAACGCCAAGCATATGCTCGATTCAGCTTTGTCAATAATAACAGATAACATGGACAAGCTTACCAAAAGAGAGGAGTATATGGAGTTAGTGGAGAAGGATCCACGTCTAGTGGTGGAGATATACGAAGCTTATTTGGCCAAACAGGTAAATACTGCAGCTCGTAAGAATCCTTCTACAAAA 822 46.35 HRIAVMQRLRETDYDNNSGYDSDIGRCFSCHDELDLHEPGTCRECYEEANDTKEELKREIEELKAKVAFLRFSSPFDPFHHKTVTGTKTYDPSFSDVVLVASEDRSDGYVFPVPAHKAVLVSRSPVFKAMLENEMEESRSGTIKIGDVSYNALRSFVSYMYTAEAYLDEQMAFDLLVLAEKYQVKHLKAYCEKYLVSKLNWDNSVMTYAFAHQHNAKHMLDSALSIITDNMDKLTKREEYMELVEKDPRLVVEIYEAYLAKQVNTAARKNPSTK 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 50249303 50250345 - BLOR01311 Blo01g01311 55751

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01311 274 CDD BTB_POZ_ZBTB_KLHL-like 94 182 - -
Blo01g01311 274 CDD BACK 202 254 - -
Blo01g01311 274 SMART BTB_4 95 199 IPR000210 GO:0005515
Blo01g01311 274 PANTHER GH01369P 16 270 - -
Blo01g01311 274 Gene3D Potassium Channel Kv1.1; Chain A 84 199 IPR011333 -
Blo01g01311 274 ProSiteProfiles BTB domain profile. 95 169 IPR000210 GO:0005515
Blo01g01311 274 Gene3D - 200 274 - -
Blo01g01311 274 Coils Coil 42 73 - -
Blo01g01311 274 SUPERFAMILY POZ domain 86 197 IPR011333 -
Blo01g01311 274 Pfam BTB/POZ domain 93 198 IPR000210 GO:0005515
Blo01g01311 274 PANTHER SPECKLE-TYPE POZ PROTEIN 16 270 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01311 K10523 SPOP; speckle-type POZ protein - zju:107421125 390.578
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01311 Blo-Chr1:50249303 Blo03g00490 Blo-Chr3:17614952 3.18E-11 dispersed
Blo01g01634 Blo-Chr1:56174890 Blo01g01311 Blo-Chr1:50249303 5.00E-06 dispersed
Blo01g01311 Blo-Chr1:50249303 Blo18g00181 Blo-Chr18:1722069 6.16E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g203 Blo01g01311 . Bda01g00680 . Bpe02g00625 . . Bma01g02094 . . Cma01g01033 . Car01g00908 . . . . . . . . . . . . . . . . . . . . Cone17ag0814 Cone20ag0419 . . . . . . . . . . . . . Cmo01g01072 . . . . . . Cpe02g00858 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008496 1 1 1 1 1 1 2 1 1 1 1 1 2 0 1 2 1 2 2 1 1 1 0 1 1 1 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11910 PF00651 BTB 1.80E-23 CL0033 Blo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01311 Blo_Chr01 FPKM 16.301136 15.321399 11.632506 12.336815 15.184801 14.113158 15.631746 12.06751 9.92325 11.55983