Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01314 ATGTTGACAGGGCTACTGGCAAAACTGCTGGAGGAGCTACTAAATGGACTGCTGGAAGATCCATATGCTTCCTTAGATCGTCCACGAGCAACTGTTGAATGCTGTGAAACTCTTCAATTTGTCTACTCATTCCTTCAATTTGGCTACCATAGGCTGCAACCGAGGAAGCAAGCAAAGGATGCCTTGAAGACACTCAAAAAGCGCCTGGCCATTAAAAATCCTAAAATACAACTTCTTGCTCTTTTCGCATTGGAGACTATCAGCAAAAATTGTGGGGAAAATGTATTTCAATTGATCATTGAGCGTGATATTCTGCACGAAATGGTTAAAATAGTAAAGAAGAAGATGCCTTGCGTTGTGTCTTCTAGTCCTTGTGAGCCTGACTTTCATGTAAAGGAAAAGATATTGAGTTTGATTGATGCATGGCAAGAAGCTTTTGGGGGACCAAGGGGTAGATATCCTCAGTATTATGCAGCCTACAATGAATTAAAGAGTGCGGGAGTTGAATTTCCACCCCGAGAAGACAATGGAGTGCCATTTTTCACTCCACCCCAGACCCAACCTATAGTTCATCATCCTGACTCAACCTACGATGACGCTGCACTTCAGGCATCTCTTCAGTCTGATGCATCTGGCCTTACCTTGCCAGAAATTCAGACAGCGCAGGGATTGGCAGATGTGTTAATGGAAATGCTTGGTGCTTTGGATCCTAAGAAACCAGAGAGTGTGAAGGAAGAAGTGATAGTGGACCTCGTAGAGCAGTGCCGTTCATACCAAACACGTGTGATGCTACTCGTGAATGAGACTGCAGATGAGGAACTTTTGTGTCAGGGATTGGCGTTGAATGACAGTTTGCAGCGTGTTCTTGGTCGACATGATGACATTTTGAATAGAACCTCCAGTGCAGGGGTCAGAGAAACTGAATCTTCAGTCTCGCCGATGTTGAATTTGAACCACGAAGATGATGATTCGGAAGATGAGTTTGCCCAGCTAGCTCATAGGGCATCTAGAGAGAGTTTGCAAGAAAAGAGCAGGAGATCAGCCAATGGCAGCTCTGATCAAGTTCCAATCAACCCATTACTTCCTCCCCCCTCATCTTCAAAGACTCCTGCTTCTTCTCGTGACACTCCCATTGTGGACTATCTAAGTGGAGACCATTATAAGTCGAAAGAATCCATCAAGACCTCAAGACCCATATCTGCCCTTCCTCTCCGCTCTGACTCACCTTCAACTGAGCCATTGAATTCAACTCTATCTTCTTCTTCGCCTCCTTATTATCGTCCCAAAACCCCCCTCATATCGCCCTTCACCGGCCTTCCTGTTTATGATGAGCCTTCTCCAAGGGACAGATCCCCAGACCCACTACCTCCGGCTCCGTGGGATGGTCGGTCACCAGCTTCACTCCCTCCTCCACCCTCCAATTATAATAAGAGACAGCAGTTTTTCGAGCAAAAACAAGGTCATGGGGGAAGTTCTCATTCAAGCAGTGAATTTGGTTCTTCATATGACAGCTTAGTCGGACCAACTCGAAGCCTCTCACTCAATCCTTCTTCACCGACCAAACAGGAAAAACCAGAAGACGCCCTCTTCAAAGATCTCGTTGATTTTGCAAAAGCCAAGTCGTCTTCGCCCTCGAAAACCAACAAATCTTACTAG 1656 45.83 MLTGLLAKLLEELLNGLLEDPYASLDRPRATVECCETLQFVYSFLQFGYHRLQPRKQAKDALKTLKKRLAIKNPKIQLLALFALETISKNCGENVFQLIIERDILHEMVKIVKKKMPCVVSSSPCEPDFHVKEKILSLIDAWQEAFGGPRGRYPQYYAAYNELKSAGVEFPPREDNGVPFFTPPQTQPIVHHPDSTYDDAALQASLQSDASGLTLPEIQTAQGLADVLMEMLGALDPKKPESVKEEVIVDLVEQCRSYQTRVMLLVNETADEELLCQGLALNDSLQRVLGRHDDILNRTSSAGVRETESSVSPMLNLNHEDDDSEDEFAQLAHRASRESLQEKSRRSANGSSDQVPINPLLPPPSSSKTPASSRDTPIVDYLSGDHYKSKESIKTSRPISALPLRSDSPSTEPLNSTLSSSSPPYYRPKTPLISPFTGLPVYDEPSPRDRSPDPLPPAPWDGRSPASLPPPPSNYNKRQQFFEQKQGHGGSSHSSSEFGSSYDSLVGPTRSLSLNPSSPTKQEKPEDALFKDLVDFAKAKSSSPSKTNKSY 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 50287278 50297023 - BLOR01314 Blo01g01314 55754

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01314 551 PANTHER TOM1-LIKE PROTEIN 4 56 550 - -
Blo01g01314 551 PIRSF TOM1 53 551 IPR014645 -
Blo01g01314 551 ProSiteProfiles GAT domain profile. 209 297 IPR004152 GO:0035091|GO:0043130
Blo01g01314 551 Pfam GAT domain 224 296 IPR004152 GO:0035091|GO:0043130
Blo01g01314 551 MobiDBLite consensus disorder prediction 301 317 - -
Blo01g01314 551 Pfam VHS domain 55 166 IPR002014 GO:0035091|GO:0043130
Blo01g01314 551 SMART VHS_2 23 167 IPR002014 GO:0035091|GO:0043130
Blo01g01314 551 MobiDBLite consensus disorder prediction 394 427 - -
Blo01g01314 551 CDD GAT_GGA_like_plant 217 295 - -
Blo01g01314 551 Gene3D - 50 180 IPR008942 -
Blo01g01314 551 SUPERFAMILY ENTH/VHS domain 56 171 IPR008942 -
Blo01g01314 551 Gene3D - 206 304 IPR038425 -
Blo01g01314 551 MobiDBLite consensus disorder prediction 326 344 - -
Blo01g01314 551 SUPERFAMILY GAT-like domain 175 296 - -
Blo01g01314 551 MobiDBLite consensus disorder prediction 451 472 - -
Blo01g01314 551 MobiDBLite consensus disorder prediction 473 522 - -
Blo01g01314 551 ProSiteProfiles VHS domain profile. 54 171 IPR002014 GO:0035091|GO:0043130
Blo01g01314 551 CDD VHS 57 165 - -
Blo01g01314 551 PANTHER TOM1-LIKE PROTEIN 56 550 IPR044836 GO:0035091|GO:0043130|GO:0043328
Blo01g01314 551 MobiDBLite consensus disorder prediction 301 527 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01314 - - - rcu:8270940 573.548
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g01314 Blo07g01352 CCT
Blo01g01314 Blo12g01115 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01314 Blo-Chr1:50287278 Blo12g00760 Blo-Chr12:25937278 6.24E-88 dispersed
Blo16g00574 Blo-Chr16:23462746 Blo01g01314 Blo-Chr1:50287278 7.17E-10 dispersed
Blo01g01314 Blo-Chr1:50287278 Blo12g01115 Blo-Chr12:28802490 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1027 Blo01g01314 . . Bda03g00706 . Bpe03g01246 . Bma10g00081 Cmo06g00456 Cmo14g00278 . Cma07g00866 Car03g01060 . Sed14g0328 Cpe10g00267 Cpe08g01035 Bhi03g01463 Tan03g1179 Cmetu08g1613 . Hepe04g1008 . . Cla04g00967 Cam04g1007 Cec04g1132 Cco04g1193 Clacu04g1035 Cmu04g1021 Cre04g1075 . Cone10ag0180 . Cone19ag1191 Lsi01g01247 Csa06g02659 Chy08g00916 Cme04g02425 Blo07g01352 . . Bda05g01183 . Bpe02g00755 Bma01g01957 . Sed02g0555 Cmo03g01169 Cmo07g00899 Cma06g00455 Cma14g00289 Car06g00396 Car14g00259 Cpe03g00248 Cpe19g00455 Bhi11g01966 Tan08g1761 Cmetu04g1328 Lac10g2902 Hepe05g0349 . . Cla10g01828 Cam10g1888 Cec10g1943 Cco10g1914 Clacu10g1903 Cmu10g2649 Cre10g2038 Lsi03g01927 Csa03g03389 Chy04g01957 Cme08g01224
Vvi18g185 Blo01g01314 Blo12g01115 Bda01g00684 . Bpe02g00621 Bpe04g00015 Bma04g00022 Bma01g02098 . Cmo15g00650 . . . . . . . Bhi04g01843 Tan11g1214 . . . . . Cla08g00646 Cam08g1070 Cec08g0655 Cco08g0766 Clacu08g0775 . Cre08g0583 Cone4ag1441 . Cone17ag0809 Cone20ag0414 . Csa04g01732 . Cme03g00439 . . . . . . . . . . . . . Car04g02322 Car15g00588 Cpe01g02087 Cpe02g00872 . . . . . . . . . . . . . . Lsi08g00505 . Chy03g00557 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001242 1 5 2 2 2 2 4 2 2 3 2 2 4 2 2 4 2 4 4 2 2 2 1 2 2 3 2 5 3 1 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01314 Blo_Chr01 FPKM 13.76 15.128548 12.987785 9.805485 21.133341 20.116905 20.981577 17.766134 17.941389 17.865402