Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01325 ATGGGGACGACCGTAACATTTACAAGCTGCAGCTTCTCCGGGAAGACTCATCTGGGAAGAGCTCCATCTCCCTGTTTACTTCCCCAAAATTATCTGTCAAGAATTTCGAGATTGGTGAATTCAAGGGAGAGTAAACTAACTGATGAAGAAGAAAGAGAGAGATTACGTGGCTTTTTGAAACGGAGAGGGGTTTTGGTTTCTGGGTTTTCTTTGTTTTCCTCTGCAGTTTTTTATGGATCTCCAATGGAGGGATCGGCGGTGGTGAAGCAAGGTCTTCTAGCAGGGAGGATTCCTGGCCTTTCTGAACCAGATGACGCAGGTTGGAGAACATATCGCAGACCAGATGAGAAATCTGGAGGCCATGGCGTAGGATGGAGTCCCATCATCCCTTATCTCTTTTCAGTTCCCCAAGATTGGGAAGAGGTTCCCGTGTCGATAGCCGATTTGGGGGGCACAGAGATCGACTTGAGGTTTGCTAGTTCAAAAGAAGGACGCCTCTCCGTCATCGTCGCTCCTGTTCTTAGATTTTCAAATGATCTGGGCGACAATGCAACCATTGAAAGGATCGGACCTCCGGAGAAAGTGATCAGTGCGTTCGGACCAGAAGTGATCGGAGAAAACGTCGACGGAAAGGTCAGAAGCATGAACGTTTCAGAGCACTCGGGAAGAACATATTATCAGTTTGAATTGGAACCACCTCATGCTCTGATTACAGCAACTGCTGCGGGGAATCGCCTCTACTTGTTCAGCATAATCGCAAATGGACTTCAATGGAAGAGGCACTCCGATGAATTGAAGAGGATAGCAGGCTCTTTTCGTGTTGTATAA 828 47.34 MGTTVTFTSCSFSGKTHLGRAPSPCLLPQNYLSRISRLVNSRESKLTDEEERERLRGFLKRRGVLVSGFSLFSSAVFYGSPMEGSAVVKQGLLAGRIPGLSEPDDAGWRTYRRPDEKSGGHGVGWSPIIPYLFSVPQDWEEVPVSIADLGGTEIDLRFASSKEGRLSVIVAPVLRFSNDLGDNATIERIGPPEKVISAFGPEVIGENVDGKVRSMNVSEHSGRTYYQFELEPPHALITATAAGNRLYLFSIIANGLQWKRHSDELKRIAGSFRVV 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 50632316 50633572 - BLOR01325 Blo01g01325 55765

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01325 275 SUPERFAMILY Mog1p/PsbP-like 123 274 IPR016123 -
Blo01g01325 275 Gene3D Mog1/PsbP, alpha/beta/alpha sandwich 127 275 - -
Blo01g01325 275 Pfam PsbP 131 274 IPR002683 GO:0005509|GO:0009523|GO:0009654|GO:0015979|GO:0019898
Blo01g01325 275 PANTHER - 30 275 - -
Blo01g01325 275 PANTHER PSBP DOMAIN-CONTAINING PROTEIN 4, CHLOROPLASTIC 30 275 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01325 - - - qsu:112040036 392.889
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01325 Blo-Chr1:50632316 Blo12g00628 Blo-Chr12:24580580 7.74E-21 dispersed
Blo01g01325 Blo-Chr1:50632316 Blo13g00891 Blo-Chr13:31473210 8.11E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1204 Blo01g01325 . Bda01g00690 . Bpe02g00615 . . Bma01g02110 . . . Cma09g01086 . . . Cpe06g00887 . . . . . . . . . . . . . . . . Cone7ag1430 . . . . . . . . . . . . . . . . Cmo09g01095 . . . Car09g00984 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011258 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 2 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01325 Blo_Chr01 FPKM 5.0444 5.0569 15.481822 15.891932 23.654278 22.68668 23.757332 0.439821 0.643978 0.656887