Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01326 ATGCCTTACCGCGGCCGAGATGACGAAGACGAAGATATCGAGCCTGAGGAGGAGGATGAGTATGAAGACGACCGCGAACAGCTTCTTGATGAGGAGGATGAAGACGAGGGAAGGGACGATCGTTCTGGCCGCAAGAGGAGGAGATCCAGCTTTATAGACGACGTTGCGGAGGAGGATGATGAAGAAGAAGAAGAGGAGGAGGAGGACGATGATGAGGATTATGGCGGTGCTGGAAGTCGGAGGCGCCCCCGCCCTAAGCGCCCTATGGGCTCTCAGTTCTTGGATATCGAGGCTGAGGTCGATTCGGACGATGACGAGGAAGAGGAGGATGGGGAAGACGACTTCATAGTTGATGGTGGAGGTGATATACCTGATGAAGATGATGGTAGAAGGATGCATCGTCGGCCTTTATTATCACGAGAGGATGAACAAGAAGACGTTGAAGCTTTGGAGAGGAGGATTCAGGCTAGATATTCAAAAACAAGGGACACTGAATATGATGAGGAAACCACAGATGTTGAACAGCAAGCTCTTTTACCATCTATTAGAGATCCTAAGTTGTGGATGATCAAGTGTGCGATTGGCCATGAGCGCGAGGCAGCTGTTTGTCTGATGCAAAAATGCATTGATAGGGGGTCTGAATTGCAAATCAGGTCTGTCATTGCTCTCGATCATCTCAAGAACTACATATACATTGAAGCAGACAAAGAAGCTCATGTTAGGGAGGCATGCAAAGGTCTCCGCAACATATATTCCCAAAAAATTATGCTTGTTCCAATTAGAGAAATGACAGATGTTCTCTCAGTTGAAAGCAAATCCATCGATCTTTCTCGAGATACCTGGGTTAGGATGAAGATTGGTACCTACAAAGGTGATCTTGCTAAGGTAATGGATGTGGATAATGTGCGGCAAAGAATTACTGTGAAATTGATTCCACGGATAGACTTGCAAGCTCTTGCTAATAAATTGGAAGGTAGAGAAGTTGCGAAGAAGGCATTTGTTCCCCCACCACGTTTTATGAATGTTGATGAAGCAAGAGAATTGCATATACGCGTGGAGCGGAGACGAGATGCCATGACTGGAGAGTACTTTGAGAATATTGGTGGAATGCAATTCAAAGATGGTTTCTTATATAAAACAGTATCAACAAAGTCAATAAGTGCTCTGAACATTAAACCAACTTTTGATGAACTCGAGAAATTTAGAAAACCTGGAGAAAATGGAGATGGAGATGTAGCTAGTTTATCCACTTTATTTGCTAACAGAAAAAAGGGGCATTTTATGAAAGGGGATGCAGTAATTGTTGTGAAGGGGGATTTAAAAAACTTGAAAGGATGGGTTGAGAAAGTGGAAGAAGAAAATGTCCACATCAGACCTGAAATGAAAGGGCTCCCAAAAACCCTTGCTGTGAATGAAAAAGAACTCTGCAAGTATTTTGAGCCTGGGAATCATGTGAAGGTTGTTTCCGGTGCTCAAGAAGGTGCAACTGGTATGGTTGTTAAGGTTGACCAACATGTGCTTATTATATTATCTGATACGACTAAGGAACATATCCGTGTATTTGCTGATGATGTTGTAGAGAGCTCTGAGGTAACATCTGGTATCACAAGGATTGGAGACTTTGAGCTGCATGATCTCGTGTTACTGGATAATATGAGCTTCGGCGTAATAATACGTGTAGAAAGTGAAGCATTTCAGGTTTTGAAGGGAGTTCCTGATAGACCAGAGGTTGATATGATTAAGTTAAGGGAGATAAAATGTAAGATTGATAAGAAGATAAGCGTTCAAGACCGGTTCAAGAACACTATTTCTGCGAAAGATGTTGTGAGAATTCTGGAGGGTCCATGTAAAGGAAAGCAAGGACCTGTGGAGCACATATACAGGGGAGTTTTGTTCATATACGATCGTCACCATCTTGAGCATGCAGGATTTATTTGTGTCAAGGCTCAGTCGTGTGTGGTAGTTGGTGGATCCCGAGCAAATGGAGATAGAAATGGCGATTCTTCAAGATTTGCTAGTTTCAAAACTCCGCCCCGCATTCCACAATCTCCTAAAAGATTCAACAGAGGTGGCCCTCCATCTGATTTTGGAGGGAGAAATAGAGGAGGTCGAGGTCATGATGGCTTAGTGGGTACTACAGTGAAAATTCGGCAAGGCTCATATAAAGGATACCGTGGACGTGTTGTAGAAATCAAAGGTCAATCTGTTCGGGTTGAATTGGAGTCACAAATGAAGGTTGTGACAGGCAAGTTTTCTATATTTGACCGTAACTTTATTTCTGATAATGTGGTTGTCTCAACGCCATACAGGGATACACCGAGATATGGCATGGGTAGTGAAACTCCTATGCATCCTTCTCGAACCCCGCTGCATCCTTATATGACCCCTATGAGAGATTCGGGAGCAACTCCTATTCATGATGGCATGAGGACACCTATGCGTGATCGGGCATGGAATCCCTATACCCCGATGACACCACTAAGGGATAACTGGGAGGACGGAAACCCTGGGTCTTGGGGATCCAGTCCACAGTACCAGCCAGGAAGCCCTCCTTCGCGGACATTTGAAGCACCAACTCCTGGTTCTGGGTGGTCTAACACTCCAAGTGGAAGTTATAGTGAAGCTGGAACGCCAAGGGACAGTAACTCGGCTTATGGTAATGCTCCAAGCCCATATTTGCCATCTACTCCTGGTGGTCAGCCTATGACTCCAAATTCTGCTTCCTATCTTCCTGGTACTCCTGGTGGGCAGCCAATGACACCAGGCACTGGAGGCTTAGATGCCATGTCTCCTGTCATTGGTGATGATCATGAAGGACCGTGGTTCATGCCGAATATACTAGTTAATGTTCGTAGAGCTGCAGATGACATCATCATCGGAGTTGTTAGAGAAGTGCTTCCGGATGGCTCTTGTAGAATAAGCAGTAACGGAGAGACGATGACGGCCCTGCCCAATGAAATGGAGGTAGTGATGCCAAGAAAGTCGGACAGAGTGAAGATAATGGGTGGGGCGCTGCGTGGGGCGACTGGGAAGTTGATTGGTATCGATGGAACAGATGGAATAGTTAAGACAGATTCATTAGAGGTTAAGATATTGGACTTGACAATGCTGGCCAAAGTTGCTCAGCATTGA 3132 45.05 MPYRGRDDEDEDIEPEEEDEYEDDREQLLDEEDEDEGRDDRSGRKRRRSSFIDDVAEEDDEEEEEEEEDDDEDYGGAGSRRRPRPKRPMGSQFLDIEAEVDSDDDEEEEDGEDDFIVDGGGDIPDEDDGRRMHRRPLLSREDEQEDVEALERRIQARYSKTRDTEYDEETTDVEQQALLPSIRDPKLWMIKCAIGHEREAAVCLMQKCIDRGSELQIRSVIALDHLKNYIYIEADKEAHVREACKGLRNIYSQKIMLVPIREMTDVLSVESKSIDLSRDTWVRMKIGTYKGDLAKVMDVDNVRQRITVKLIPRIDLQALANKLEGREVAKKAFVPPPRFMNVDEARELHIRVERRRDAMTGEYFENIGGMQFKDGFLYKTVSTKSISALNIKPTFDELEKFRKPGENGDGDVASLSTLFANRKKGHFMKGDAVIVVKGDLKNLKGWVEKVEEENVHIRPEMKGLPKTLAVNEKELCKYFEPGNHVKVVSGAQEGATGMVVKVDQHVLIILSDTTKEHIRVFADDVVESSEVTSGITRIGDFELHDLVLLDNMSFGVIIRVESEAFQVLKGVPDRPEVDMIKLREIKCKIDKKISVQDRFKNTISAKDVVRILEGPCKGKQGPVEHIYRGVLFIYDRHHLEHAGFICVKAQSCVVVGGSRANGDRNGDSSRFASFKTPPRIPQSPKRFNRGGPPSDFGGRNRGGRGHDGLVGTTVKIRQGSYKGYRGRVVEIKGQSVRVELESQMKVVTGKFSIFDRNFISDNVVVSTPYRDTPRYGMGSETPMHPSRTPLHPYMTPMRDSGATPIHDGMRTPMRDRAWNPYTPMTPLRDNWEDGNPGSWGSSPQYQPGSPPSRTFEAPTPGSGWSNTPSGSYSEAGTPRDSNSAYGNAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTPGTGGLDAMSPVIGDDHEGPWFMPNILVNVRRAADDIIIGVVREVLPDGSCRISSNGETMTALPNEMEVVMPRKSDRVKIMGGALRGATGKLIGIDGTDGIVKTDSLEVKILDLTMLAKVAQH 1043
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 50652923 50661439 + BLOR01326 Blo01g01326 55766

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01326 1043 CDD NGN_Euk 186 268 IPR039385 -
Blo01g01326 1043 MobiDBLite consensus disorder prediction 835 890 - -
Blo01g01326 1043 MobiDBLite consensus disorder prediction 123 146 - -
Blo01g01326 1043 CDD KOW_Spt5_4 606 648 IPR041977 -
Blo01g01326 1043 CDD KOW_Spt5_6 985 1041 IPR041980 -
Blo01g01326 1043 MobiDBLite consensus disorder prediction 803 932 - -
Blo01g01326 1043 SUPERFAMILY Translation proteins SH3-like domain 470 529 IPR008991 -
Blo01g01326 1043 MobiDBLite consensus disorder prediction 1 146 - -
Blo01g01326 1043 Pfam KOW motif 481 508 IPR005824 -
Blo01g01326 1043 MobiDBLite consensus disorder prediction 662 676 - -
Blo01g01326 1043 PANTHER SUPPRESSOR OF TY 5 33 1041 IPR039659 GO:0006357|GO:0032784
Blo01g01326 1043 MobiDBLite consensus disorder prediction 38 54 - -
Blo01g01326 1043 MobiDBLite consensus disorder prediction 899 913 - -
Blo01g01326 1043 MobiDBLite consensus disorder prediction 97 122 - -
Blo01g01326 1043 CDD KOW_Spt5_3 478 528 IPR041976 -
Blo01g01326 1043 PIRSF Spt5 3 1043 IPR017071 GO:0006357|GO:0032784
Blo01g01326 1043 Coils Coil 140 160 - -
Blo01g01326 1043 Gene3D - 275 317 IPR014722 -
Blo01g01326 1043 Gene3D - 421 478 IPR014722 -
Blo01g01326 1043 CDD KOW_Spt5_1 279 316 IPR041973 -
Blo01g01326 1043 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT5 33 1041 - -
Blo01g01326 1043 MobiDBLite consensus disorder prediction 55 73 - -
Blo01g01326 1043 CDD KOW_Spt5_5 706 748 IPR041978 -
Blo01g01326 1043 Gene3D - 166 268 IPR036735 GO:0006355
Blo01g01326 1043 Gene3D - 691 752 IPR014722 -
Blo01g01326 1043 SMART kow_9 275 302 IPR005824 -
Blo01g01326 1043 SMART kow_9 707 734 IPR005824 -
Blo01g01326 1043 SMART kow_9 991 1018 IPR005824 -
Blo01g01326 1043 SMART kow_9 426 453 IPR005824 -
Blo01g01326 1043 SMART kow_9 602 629 IPR005824 -
Blo01g01326 1043 SMART kow_9 478 505 IPR005824 -
Blo01g01326 1043 Gene3D - 481 530 IPR014722 -
Blo01g01326 1043 SMART nusgn_4 184 270 IPR006645 GO:0140673
Blo01g01326 1043 ProSitePatterns Ribosomal protein L24 signature. 430 447 IPR005825 GO:0003735|GO:0005840|GO:0006412
Blo01g01326 1043 Pfam Spt5 transcription elongation factor, acidic N-terminal 93 180 IPR022581 -
Blo01g01326 1043 CDD KOW_Spt5_2 427 477 IPR041975 -
Blo01g01326 1043 MobiDBLite consensus disorder prediction 659 710 - -
Blo01g01326 1043 Coils Coil 18 38 - -
Blo01g01326 1043 Pfam Early transcription elongation factor of RNA pol II, NGN section 186 267 IPR005100 -
Blo01g01326 1043 MobiDBLite consensus disorder prediction 9 37 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01326 K15172 SUPT5H, SPT5; transcription elongation factor SPT5 - csv:101204562 1663.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01326 Blo-Chr1:50652923 Blo04g00339 Blo-Chr4:2664192 1.67E-27 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1207 Blo01g01326 . Bda01g00691 . Bpe02g00614 . . Bma01g02111 Cmo04g02539 Cmo15g00634 . . . . Sed01g2883 . Cpe13g00663 Bhi04g01823 Tan11g1195 Cmetu03g0776 . Hepe02g2759 . Lcy10g1309 Cla08g00661 Cam08g1091 Cec08g0676 Cco08g0785 Clacu08g0796 . Cre08g0599 . . . . . . . Cme03g00404 . . . . . . . . . . . . . Car04g02336 Car15g00576 Cpe01g02098 . . . . . . . . . . . . . . . Lsi08g00519 . Chy03g00585 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005509 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 2 3 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01326 Blo_Chr01 FPKM 11.702317 12.133497 17.531473 16.638565 33.512684 28.295464 34.667358 23.562149 22.145567 22.666634