Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01329 ATGAGCGATTTGCCTTTTGGGTTTGGGAGTTCAAAGTCTTTCATTGCCCACCCGAAAGTCGAATTTGATCTAGAATCAGGAACCGTTAGGAAAGTTAGAAAACCGCGGAACTCTCCCTTTAAACTCGTCAGAATGCTCAAATCTTTGGCAAATCGTCTTCGCCACTCTTATAAACTCCATCCTGTTATAAGCTTCTTTATTTCTTTGTCACTCGTGCTCACTGTTCTCATGGTCCTGTCCACTTATGAGAGAAAGTATCGAATTATGAGCAATTATCGAATATCCAATGTGGATTCAGATAGCTATTCCTTTCCCAAGCTTCAGAATCTTGTAATGGTTGCTGGGCATTCAGTTTACACGAGTAGTAGTTGTGGAAAAGTTGATAAGGAGGATTCTTGGTTTTTGGAGTCATATCAAAAGCATCCAGGCCAAGCAGCAACTTTCATTACACATATAGAAGGAGGAATTAAAATTGCAGCCAAGGACGATACTGCTTTGCTTCTCTTTAGTGGGGGAGAGACCAGGAAGGATGCTGGTCCTCGCAGTGAGGCTCAGAGTTATTGGACTGTTGCTGAATCAAAAGGATGGTTTGGGAAGGAAGAACTCGTGAGATCAAGAGCACTTACAGAAGAGTATGCAAGGGATAGCTTTGAAAATCTTCTATTTAGCGTGTGTCGGTTCCGGGAGCTCACTGGTGCATATCCTCGAAATATAACAGTAGTAAGTTACGATTTTAAGGAGGAAAGATTTGCTGGGCTTCATCGTTCTGCCATTGGCTTTCCAGAATCAAGGTTCTTCTTTGCAGGCACGCCAGCTTCCTCAACTTCAACAGAAGCAGCTGTGAAAGGTGAAGCATTGGTTCGAGCCCAGTTCCAAGAAGATCCATACGGATGCCGAGGTTCTGTTTTGCATTGGTATCAATGGGAAACTAGCAGAAGGCTATTTAATTCTTACAGAGAATTGAAATACCAACTTCAAAATCATTTTCGGAGTGTAATGGAATGGACAGAATATGAAAAAACAGTCATCAGAAAAGAAAGGATGAAGGCAGCAAAGAATACCGGGGAGGAGAAGGAAATAATCGAGCGTGAAGAGTTGGTGACAAAAGAAATCTTCTTGGAAAAGATTGACCGAGTAGCAGCAGAGACAAAGAATTTTGAGTACGTGGGTGGGGAAATCGCGTCATCGGAAAAGGAAGAGGCGGCTGAGGAGGAAGAAAATAAATGGTTTTCGCTGGTGGCAAGGAAAGAGGCAATAGAAGAGGAAGTTGTAACTAACCGAGAAGGAGAATCAATGGCCAATGAAATCTGTTGTGGGCAAACAGTAGCGCGCGAAGAACTGGTGATGAAAAAGATCGGAAGAAGAGGAAGCGGGATTTTCGTGACTGCAGTAGAGGCGACGACGACGGTGGAAGTGGAGGAACCAGCTACGGTAGATATGGACGAGCTGCTAGAGGAGAAACTTACAATTGCAATGCAGGAAGAAAAGAAAAAGTTGTTTCCAGAAAACCAAAAAGGGTTAAAGGATATTGTTGGGCCAACTTCAACTATGGCCTATTTGGATAAAACACGGGGTTTAAAAAAAGATAGCATTTTACTCAAGGCAATTGGGATGAGAAATTTAATGTATCATGCAGAGGAAGAAGAGAAATGTTTTGTGCTTCATTCTAGCCTACTTCCTCTTAAGAATCTTGAGGATGACTTGATAGAGATAAAGTTTTACGATTTCGAATTCATTAAGGAAAAAGATTATGAAAATATAGATACAAAGTGTATTTTTAATTTTTTTTTCCACCTTGAGGATAATGTGTCTTTTTAG 1818 41.36 MSDLPFGFGSSKSFIAHPKVEFDLESGTVRKVRKPRNSPFKLVRMLKSLANRLRHSYKLHPVISFFISLSLVLTVLMVLSTYERKYRIMSNYRISNVDSDSYSFPKLQNLVMVAGHSVYTSSSCGKVDKEDSWFLESYQKHPGQAATFITHIEGGIKIAAKDDTALLLFSGGETRKDAGPRSEAQSYWTVAESKGWFGKEELVRSRALTEEYARDSFENLLFSVCRFRELTGAYPRNITVVSYDFKEERFAGLHRSAIGFPESRFFFAGTPASSTSTEAAVKGEALVRAQFQEDPYGCRGSVLHWYQWETSRRLFNSYRELKYQLQNHFRSVMEWTEYEKTVIRKERMKAAKNTGEEKEIIEREELVTKEIFLEKIDRVAAETKNFEYVGGEIASSEKEEAAEEEENKWFSLVARKEAIEEEVVTNREGESMANEICCGQTVAREELVMKKIGRRGSGIFVTAVEATTTVEVEEPATVDMDELLEEKLTIAMQEEKKKLFPENQKGLKDIVGPTSTMAYLDKTRGLKKDSILLKAIGMRNLMYHAEEEEKCFVLHSSLLPLKNLEDDLIEIKFYDFEFIKEKDYENIDTKCIFNFFFHLEDNVSF 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 50755026 50759565 - BLOR01329 Blo01g01329 55769

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01329 605 PANTHER TRANSMEMBRANE PROTEIN 46 322 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01329 - - - vvi:100264380 454.907
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01329 Blo-Chr1:50755026 Blo08g00433 Blo-Chr8:8684774 1.58E-31 dispersed
Blo18g00634 Blo-Chr18:10797824 Blo01g01329 Blo-Chr1:50755026 4.84E-08 dispersed
Blo01g01329 Blo-Chr1:50755026 Blo04g00566 Blo-Chr4:4867342 3.91E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1226 Blo01g01329 . Bda01g00694 Bda03g00031 Bpe02g00612 . . Bma01g02113 . . Cma01g00992 Cma09g01092 Car01g00883 . . Cpe06g00892 . . . . . . . . . . . . . . . Cone4ag1517 Cone7ag1434 . . . . . . . . . . . . . . . Cmo01g01029 Cmo09g01101 . . . Car09g00990 . Cpe02g00900 Bhi09g01507 . . . . . . Cla09g00920 Cam09g0972 Cec09g0977 Cco09g0983 . . Cre09g0941 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007698 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01329 Blo_Chr01 FPKM 1.190025 1.099808 3.089798 3.140692 1.22168 1.60389 1.640298 3.101923 3.057498 3.289468