Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01332 ATGCAAAGTGCTGGGAATAACACGACATTTTGGATTCATCGGTGGGTCAGACTCCGACTCCACTCCGATTCTCGCCGTTCACCGCTCGGAGCTCTGAAATTCCGTTTTCAGTTGCCGGGCTGGGGGCCAGAGGGAGCGTGTGATTTTGGAATTTTGAATGGTGATGGTGGGTTTTGGTTCCGTTGGCGAGTTACAGATCTGCTAAAGCTTTGGAAGGGAGGGGATGGTGCTGTTTTGCTGAATTCTTCACATGGAATGGCTGATCTTGTTAGCTACGGGAACGCCGATCGAGACATTCAGCAGGCATTGATTACTTTGAAGAAGGGTAGTCAGCTACTCAAGTATGGTCGTAATGGGAAGCCTAAGTTTTGTCCCTTTAGACTTTCTAGTGATGAGTCGTCTCTGATCTGGATTTCAGGTGGTGGTGAAAAATTTCTGAAGCTTGCTTCTGTATCTAGAATAATTCCTGGACAGCGAACTGCTGTTTTTCAACGATATTTGCTCCCTGAAAAGGATTATTTGTCCTTTTCTCTTATATACAACAATGGAAAGCGGTCCCTTGATTTGATTTGCAAGGATAAAGTTGAAGCAGAGGTTTGGATTGCAGGGCTCAAAGCATCAATAGCATCTGGTCAAGGTGGAGGTTCAAAAATTGATGGATGGAATGATGGAGGCCCACACCTCGATGAAAGCAGTGATATGACTTCAAACAGCCCGAGTGACTGTTCAAATAGTGTCAACAGAGATATTAGCTCTCCTGAATCCTGTACCAATTTCAACCCAAATAAATCTCCTAGGAGTACTAAGCCTGAGAATTCTGTGCTTTCTGAAAGGTCACATGTAGTTTCAAACCAGACAAGTATGCAAGGAAAAGGATCCAGTTCAGATGCCTTTCGTGCTAGTTTTTCAAGTGCTCCAAGCTCTTCTAGTCATGGTTCTGTGCCAGATGAGTATGAGGCTCTAGGGGATGTATACATATGGGGAGAGGTTATTAATGGTAATGCTGGGAAGTTTGCGGGGGAAAAAAATTCTAATTGTGTGGGCCTAAGAACTGACGTACTTCTCCCCAGGCTGTTAGAATCCAATGTTGTTTTAGATGTAGTTCATATAGCTTGTGGAGTCAGGCATGTGGCCCTAGTCACTAGGCAAGGCAACGTTTTCACATGGGGAGAGGAATCTGGTGGAAGGCTTGGGAATGGTGTTAGGAAGGATTACATTCAACCTCATCTAGTTGAATCTTTAGCAGCTACTAATGTTTATTTTGCCGCATGTGGGGAGTTTCATTCTTGTGCTGTTACAATGGATGGGGAACTTTACACATGGGAAGATGGTACTCACAATGCTGGGCTTCTTGGCCATGGCACTGATGTGAGTCATTGGATTCCAAAGCGTGTTGCAGGCCCTCTTGAGGGGCTTGTGGTCGCTTCAGTGGCATGTGGTACGTGGCATACAGCTTTGGTGACATCGATGGGACAGCTTTTCACATTTGGCGATGGTACTTTCGGGGTGTTGGGCCATGGAGATAGAGAAAGTTTTTCACGTCCAAGAGAAGTTGAGTCTTTATCAGGGCTGAAAACGATTGCAGTCGCATGTGGAGTGTGGCATACAGCTGCAGCAGTAGAAGTTATTGTGGCACACTCTAGTACAAGTGTTTCATCAGGTAAACTATTCACTTGGGGCGATGGAGATAAAAATCGATTAGGCCAGGGTGATAAGGACCCTCGGCTAAAGCCTACATGTGTACCTGCATTAATCGATTACAACTTTCGTAAAATCGCTTGTGGGTATAGTTTAACAGTTGGCTTGACCATATCTGGGGAAGTATTCACTATGGGGAGTACTGTTTATGGTCAGCTTGGGAATCCACAGGCTGATGGAAAGCAACCATGCTTGGTAGGAGATAAGCTTTTCAGGGAGGCCGTTGAGGAAGTGGCTTGTGGGGCTTACCATGTGGCAGTACTAACTTCCAAAAATGAGGTTTATACTTGGGGAAAGGGTGCAAATGGTAGGTTGGGCCATGGAGATGTTGAAGATCTCAAAGCTCCAACTCTAGTAGAGGCCTTGAAGGATAGGCATGTGAAATATATTGCTTGCGGGTCAAACTACACGACTGCAATTTGTCTTCATAAATGGGTATCAGGGGCTGAGCAGGCACAATGCTCTGCTTGCAGACAAGCTTTTGGTTTTACACGAAAGAGGCACAACTGCTATAACTGTGGCCTTGTCCACTGTCATTCATGCAGTTCCAAAAAAGCCCACAGTGCTGCTCTAGCTTCTAACCCCAGCAAACCAAATCGAGTGTGTGATTCTTGTTATTCTAAATTGATCAAAGTGTCTGATATTAATAATAGGAGAGGTGCTATACTTCGCCTCCCCGGTGAAAGCAAAGATAGCTTAGATAAGGGTGAGATAAGATTGTCGAAGTCTGTTCCTTCTAATATGCAGTTAATAGAGCAATTAGATAACAAAGCAACCTCCTCCCTTGGCAGCAGCTATCAAGCACCTTCCCTATTGCAGCTCAAAGAAGCTGTTTTGGCAACTTCTGTTGAGTTTCGACCACCAGGTTGGAGGTTTGTTCTTATGAATTCGGCAGTGAGTTCAAGATCTGTTTCACCTTTCTATAGGAGACCAAGTCCGCCACGCTCTGCTACTCCTGTTCCAACGGTATCTGGACTTTCTTTCTCTAAGAGTATGATCGATAGTTTGAAGAAAACCAACGAACTATTGAATCAGGAGGTTGTCAAGTTACGCGCTCAGGTTGAGAGCCTCAAACAGAAGTGTGAACTTGAAGAACTGGAAATTCGAAAAACAGTTAAGAAAACACAAGAAGCATTGTCATTGGCTGCAGAAGAATCTGCAAAATCTAAAGCAGCCAAAGAAGTTATTATGTCTCTTACAGCTCAGCTTAAAAACCTGGCCGAGAGACTACCCTCTGGAAGTTATGACTTAGAGAGCACGAGAATAGTACATCCTCCAAATGGTTCAGATCTGAATGGTATTCATTATTCAGATGCAATTAGAGGACGATGTACAAGATCCGATTCTCTTACTTCCATTTCCTTGGCTTCTCCGAGAACTAGTGACTCTGCCTCCGTAAAGGGATTTCAAGATCAAGCTCAGTTGTCTCAGGAAGAACCTGCCACTGAAACTACCAGGCTGGAGGAGCATGCCAAATTTAGGCTGTCAAATGGTGGTGGTGGTGGAGGTCCTATGAGTAATGGTAGTGTGTCAGAGGTTGTTGATCAAAACAAAGAACGACCCAATAATGCTGATTTAGCTGGCAATTCAAATCAAGTAGAGGCAGAATGGATTGAACAGTACGAACCCGGTGTATATATTACTCTCGTGACACTGCGTGATGGAACACGAGATCTTCAACGAGTGCGCTTCAGCCGGAGAAGATTTGGAGAGAATCAAGCTGAGAATTGGTGGTCAGGCAACCGTGAAAGGGTGTACGATAAATACAATATTCGTGGGTTAGACAAGTCCTCCGATTCCAGGCAGCATGCACGAAGATCAGATAGGCCTACCTCGCCTGCTTCCTCTATACTTACAGAGGGAGATGAATGTAAGTCCTTCCATTTGAAATTATGA 3594 44.69 MQSAGNNTTFWIHRWVRLRLHSDSRRSPLGALKFRFQLPGWGPEGACDFGILNGDGGFWFRWRVTDLLKLWKGGDGAVLLNSSHGMADLVSYGNADRDIQQALITLKKGSQLLKYGRNGKPKFCPFRLSSDESSLIWISGGGEKFLKLASVSRIIPGQRTAVFQRYLLPEKDYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKASIASGQGGGSKIDGWNDGGPHLDESSDMTSNSPSDCSNSVNRDISSPESCTNFNPNKSPRSTKPENSVLSERSHVVSNQTSMQGKGSSSDAFRASFSSAPSSSSHGSVPDEYEALGDVYIWGEVINGNAGKFAGEKNSNCVGLRTDVLLPRLLESNVVLDVVHIACGVRHVALVTRQGNVFTWGEESGGRLGNGVRKDYIQPHLVESLAATNVYFAACGEFHSCAVTMDGELYTWEDGTHNAGLLGHGTDVSHWIPKRVAGPLEGLVVASVACGTWHTALVTSMGQLFTFGDGTFGVLGHGDRESFSRPREVESLSGLKTIAVACGVWHTAAAVEVIVAHSSTSVSSGKLFTWGDGDKNRLGQGDKDPRLKPTCVPALIDYNFRKIACGYSLTVGLTISGEVFTMGSTVYGQLGNPQADGKQPCLVGDKLFREAVEEVACGAYHVAVLTSKNEVYTWGKGANGRLGHGDVEDLKAPTLVEALKDRHVKYIACGSNYTTAICLHKWVSGAEQAQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSKKAHSAALASNPSKPNRVCDSCYSKLIKVSDINNRRGAILRLPGESKDSLDKGEIRLSKSVPSNMQLIEQLDNKATSSLGSSYQAPSLLQLKEAVLATSVEFRPPGWRFVLMNSAVSSRSVSPFYRRPSPPRSATPVPTVSGLSFSKSMIDSLKKTNELLNQEVVKLRAQVESLKQKCELEELEIRKTVKKTQEALSLAAEESAKSKAAKEVIMSLTAQLKNLAERLPSGSYDLESTRIVHPPNGSDLNGIHYSDAIRGRCTRSDSLTSISLASPRTSDSASVKGFQDQAQLSQEEPATETTRLEEHAKFRLSNGGGGGGPMSNGSVSEVVDQNKERPNNADLAGNSNQVEAEWIEQYEPGVYITLVTLRDGTRDLQRVRFSRRRFGENQAENWWSGNRERVYDKYNIRGLDKSSDSRQHARRSDRPTSPASSILTEGDECKSFHLKL 1197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 50868512 50875934 + BLOR01332 Blo01g01332 55772

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01332 1197 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 491 542 IPR000408 -
Blo01g01332 1197 MobiDBLite consensus disorder prediction 1021 1047 - -
Blo01g01332 1197 Pfam Regulator of chromosome condensation (RCC1) repeat 491 538 IPR000408 -
Blo01g01332 1197 Pfam Regulator of chromosome condensation (RCC1) repeat 659 706 IPR000408 -
Blo01g01332 1197 Pfam Regulator of chromosome condensation (RCC1) repeat 605 654 IPR000408 -
Blo01g01332 1197 Pfam Regulator of chromosome condensation (RCC1) repeat 384 432 IPR000408 -
Blo01g01332 1197 Pfam Regulator of chromosome condensation (RCC1) repeat 553 600 IPR000408 -
Blo01g01332 1197 Pfam Regulator of chromosome condensation (RCC1) repeat 435 486 IPR000408 -
Blo01g01332 1197 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 554 605 IPR000408 -
Blo01g01332 1197 ProSiteProfiles BRX domain profile. 1101 1156 IPR013591 -
Blo01g01332 1197 MobiDBLite consensus disorder prediction 1021 1051 - -
Blo01g01332 1197 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 658 709 IPR000408 -
Blo01g01332 1197 Coils Coil 955 975 - -
Blo01g01332 1197 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 714 785 IPR013083 -
Blo01g01332 1197 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 436 490 IPR000408 -
Blo01g01332 1197 CDD PH_PLC_plant-like 97 209 - -
Blo01g01332 1197 Gene3D - 274 542 IPR009091 -
Blo01g01332 1197 Gene3D - 543 713 IPR009091 -
Blo01g01332 1197 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 606 657 IPR000408 -
Blo01g01332 1197 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 714 776 IPR017455 -
Blo01g01332 1197 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 477 487 IPR000408 -
Blo01g01332 1197 MobiDBLite consensus disorder prediction 1162 1184 - -
Blo01g01332 1197 MobiDBLite consensus disorder prediction 229 314 - -
Blo01g01332 1197 Pfam FYVE zinc finger 710 775 IPR000306 GO:0046872
Blo01g01332 1197 Pfam Transcription factor regulating root and shoot growth via Pin3 1100 1155 IPR013591 -
Blo01g01332 1197 PRINTS Chromosome condensation regulator RCC1 signature 653 674 IPR000408 -
Blo01g01332 1197 PRINTS Chromosome condensation regulator RCC1 signature 386 402 IPR000408 -
Blo01g01332 1197 PRINTS Chromosome condensation regulator RCC1 signature 595 613 IPR000408 -
Blo01g01332 1197 PRINTS Chromosome condensation regulator RCC1 signature 367 380 IPR000408 -
Blo01g01332 1197 PRINTS Chromosome condensation regulator RCC1 signature 493 507 IPR000408 -
Blo01g01332 1197 PRINTS Chromosome condensation regulator RCC1 signature 436 452 IPR000408 -
Blo01g01332 1197 PRINTS Chromosome condensation regulator RCC1 signature 477 493 IPR000408 -
Blo01g01332 1197 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 98 1163 - -
Blo01g01332 1197 Pfam Transcription factor BRX N-terminal domain 950 982 IPR027988 -
Blo01g01332 1197 MobiDBLite consensus disorder prediction 211 314 - -
Blo01g01332 1197 SUPERFAMILY RCC1/BLIP-II 321 711 IPR009091 -
Blo01g01332 1197 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 322 383 IPR000408 -
Blo01g01332 1197 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 384 435 IPR000408 -
Blo01g01332 1197 SUPERFAMILY FYVE/PHD zinc finger 710 782 IPR011011 -
Blo01g01332 1197 SUPERFAMILY PH domain-like 98 207 - -
Blo01g01332 1197 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 98 1163 - -
Blo01g01332 1197 Coils Coil 899 940 - -
Blo01g01332 1197 Gene3D - 98 213 IPR011993 -
Blo01g01332 1197 SMART fyve_4 708 777 IPR000306 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01332 - - - tcc:18592573 1540.4
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g01332 Blo18g00216 CCT
Blo01g01332 Blo17g00217 CCT
Blo01g01332 Blo12g01105 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01332 Blo-Chr1:50868512 Blo18g00216 Blo-Chr18:2122330 0 dispersed
Blo01g01332 Blo-Chr1:50868512 Blo12g01105 Blo-Chr12:28741846 0 wgd
Blo01g01332 Blo-Chr1:50868512 Blo17g00065 Blo-Chr17:484447 1.21E-12 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1250 Blo01g01332 Blo12g01105 Bda01g00698 Bda03g00034 Bpe02g00609 Bpe04g00023 Bma04g00032 Bma01g02116 Cmo04g02551 Cmo15g00619 Cma01g00988 . Car01g00880 . . Cpe06g00896 Cpe13g00670 . . . . . . . Cla08g00677 Cam08g1107 Cec08g0692 Cco08g0801 Clacu08g0813 . Cre08g0617 Cone4ag1510 Cone7ag1441 Cone17ag0794 Cone20ag0391 . . . Cme03g00380 Blo17g00217 Blo18g00216 . Bda13g01525 Bpe02g01605 Bpe14g00336 Bma01g00865 Bma02g00275 . Cmo01g01025 . . . Car04g02348 Car09g00994 Cpe01g02108 . Bhi09g01500 . . . . . . Cla09g00924 Cam09g0977 Cec09g0982 Cco09g0988 . . Cre09g0945 Lsi08g00535 . Chy03g00542 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000956 5 4 4 4 4 2 4 2 2 2 2 2 3 2 2 4 2 4 4 2 4 2 2 2 2 2 2 4 2 1 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01332 Blo_Chr01 FPKM 53.779194 60.00861 34.105652 36.174564 80.564507 70.594673 65.362572 33.953545 32.375252 35.715469