Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01344 ATGACGATGTACTCCCACTTTGTCTGCCCCGTCAATGGACAAATCGAGTGGCCTCTTGTGACACATCTTGATCCAATTATCCCACCGCCATTTAAAAGGCTTTCAGGAAGGCGGGAAAAACATAGAATACGAGATGTGGACGAGGCCCCAAGCTGGACAGTGCTGCCCAGAAGACATATGAACATGACCTATGGTCGGTGTGGGGGTGTGGGGCACAATTCCTGCACGTGCGAAGGTGGAGGTGAGTCCAGAGCATGTGGCGGTAGAGGCAGAGGCAGAGGCAGAGGCGGCAGAGGAAGGTCAGAGGCCACATTTATGGGTTTCAGAGTCCCCGAGATAGGCCCCGAGACACAGTCTGCCATAGTCCCAGAGACAGTTTCTGAGACAGTTCTCGACAGAGTTCTTGAGATGCAGGTAGCTGGTGTTCCTGGTGTGACAGAAGCTTTATTTCTAGCTAGACAATCTGCAGTTTCACAAGAGAACACAAAGTCTAGTGAAACCCCAATGTTGTACTCTTGTGGTCTCTGTGGAAAAGGATACAGAAGTTCCAAAGCTCATGCTCAGCATCTTAAATCAAGAAGTCATACAACACGAGCTTCTCAAGGGTCCAATGAAGAAGATGAGAAGGCTTTAATCAAGCCACTTGTCCGGAGAACTGCAAATAAGATTCCCCAACAGAAAGGACATAATGAAGAAAGTGATGAGAGTGAAGATGAGTGGGAGGAAGTTGACCCAGATGAAGATTTGGTTATTGAGGCCACACAGTCCATGACTGGTATGAGGATGAAAGATCTTGATGGTGAGATGGGTGATGATGTGGATGACAATGATGACATCGAGGAGTTGGACCCATCATGCTGCTTTATGTGTGACCTGGATCATGACACTATTGAAAGTTGTATGGTTCACATGCACAAGCAGCATGGTTTCTTTATTCCCGATGTCGATTATTTGAAGGACCCAGCCGGCCTGCTTACTTATCTTAGCCTGAAGTGGATTGAGTTATCTATGAGGTTTAAGGTGGGGACCCAGGATGTTAGATTGCAGAGAGATCCAAGTCTTAGTAAGAATTCGGTGTCTTTAAAAGCCTTGATGAAAGCTATAAAAAAAGGCGGCGGCGAAGGAGTATTATTGGAATGCTACAACTTGCAGCTGACTGAGCCCCTTCCCGCACATGAGGATCATTACGAATTCTTGGTAATGTCTTTTGGCCCTTTTATTATCAAAGCTGATGCTTTGGGTTGTGGACTTGGGGCATGGCGACCATATTTATTGGGACATAAATTTATTGTTCAAACAGATCAACGTAGTATTAAGTTTCTTCTAGAGCAACGAGTGGTAAGTACCAACCACAAAAAATGGTTAACCAAACTAATGAGCTATGATTTTGACCAAAGAATCATCTATCATTCCTCTTCTACTCAAAGAATTTCATTGCATGACTTCCTGCACACTATTATTTCTGACAGAGATAAGGTTTTCCTTAGCCTATTTTGGAAAGAATTATTCAAACTACAAGGCACTAAGCTACAACATAGCACGACCTACCATCCTCAAACGGACGACTAA 1569 44.68 MTMYSHFVCPVNGQIEWPLVTHLDPIIPPPFKRLSGRREKHRIRDVDEAPSWTVLPRRHMNMTYGRCGGVGHNSCTCEGGGESRACGGRGRGRGRGGRGRSEATFMGFRVPEIGPETQSAIVPETVSETVLDRVLEMQVAGVPGVTEALFLARQSAVSQENTKSSETPMLYSCGLCGKGYRSSKAHAQHLKSRSHTTRASQGSNEEDEKALIKPLVRRTANKIPQQKGHNEESDESEDEWEEVDPDEDLVIEATQSMTGMRMKDLDGEMGDDVDDNDDIEELDPSCCFMCDLDHDTIESCMVHMHKQHGFFIPDVDYLKDPAGLLTYLSLKWIELSMRFKVGTQDVRLQRDPSLSKNSVSLKALMKAIKKGGGEGVLLECYNLQLTEPLPAHEDHYEFLVMSFGPFIIKADALGCGLGAWRPYLLGHKFIVQTDQRSIKFLLEQRVVSTNHKKWLTKLMSYDFDQRIIYHSSSTQRISLHDFLHTIISDRDKVFLSLFWKELFKLQGTKLQHSTTYHPQTDD 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 51086935 51104084 + BLOR01344 Blo01g01344 55784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01344 522 ProSiteProfiles Zinc finger C2H2 type domain profile. 171 200 IPR013087 -
Blo01g01344 522 Pfam C2H2 type zinc-finger (2 copies) 287 331 IPR041661 -
Blo01g01344 522 MobiDBLite consensus disorder prediction 200 215 - -
Blo01g01344 522 Pfam RNase H-like domain found in reverse transcriptase 415 461 IPR041373 -
Blo01g01344 522 ProSitePatterns Zinc finger C2H2 type domain signature. 173 195 IPR013087 -
Blo01g01344 522 MobiDBLite consensus disorder prediction 186 246 - -
Blo01g01344 522 SUPERFAMILY beta-beta-alpha zinc fingers 170 203 IPR036236 -
Blo01g01344 522 PANTHER ZINC FINGER PROTEIN 622 135 331 IPR040025 -
Blo01g01344 522 Gene3D - 437 522 IPR036397 GO:0003676
Blo01g01344 522 SUPERFAMILY Ribonuclease H-like 477 521 IPR012337 -
Blo01g01344 522 MobiDBLite consensus disorder prediction 81 102 - -
Blo01g01344 522 PANTHER ZINC FINGER PROTEIN-RELATED 135 331 - -
Blo01g01344 522 SUPERFAMILY beta-beta-alpha zinc fingers 271 335 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01344 Blo-Chr1:51086935 Blo05g00446 Blo-Chr5:6170543 1.61E-57 dispersed
Blo01g01344 Blo-Chr1:51086935 Blo10g00281 Blo-Chr10:4055062 1.79E-49 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01344 K14816 - zju:107420801 279.256