Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01352 ATGGAGGGGGCTGTGTGTCCTGCAGATGCATCCAACGATGACTTTTGTAGTTTCATTCTTAACCGTTTCAGCTCCTCCACGAATGAATATCACATGAACGCTTGTGCAGTGATAGGCGCCATGTCTCAAGAGCTCAAAGATCAGAACCTGTCGACTACGCCAATTGCCTATTTTGGTGCCACTTTGTCTTCATTGAACCGCATATCTTCTGAATCTGAATCTCCAGTTCACCTATTGGATGCGCTTCTCGCTATTTTTTCATTGCTTCTACCGAGAATCTCTCCTGCTATTTTGAAAAAGAAGAGGGAGTTGATTTCAGAGGTTTTAATCCGTTCTCTTCATTCCCCATCGCTGACTGTTGGTGCAGCTACGTCAGGATTAAAATGCATTTCACATCTGCTGGTTATCAACGACAATGTTAGCTGGTCAGATATATCAAATCTGTTCAATATCTTATTAGGATTTGCTACAGATTCTCGCCATGAGGTGAGAAGACAATCACATGTCAGTATTCGCGACTTCTTGTTGAAAAGCCAGAAAACAGTTTTGCTAGCAGAGGCGAGTGAAGTGATTACGAATACATTCAAAAGGTCTATTTTGTTTGCTGGTGGAAAAAACACAAATAGTTCTGAAGGATCTAAAGAAGCTCAGAAGGTTTTATACATTCTAGATGCGTTACAAGAATGTATTCCTCATATATCTGGGAAGTGCAAAACGAGCATCCTGGAGTATTTCAAGTCTCTCCTGAAATTGCAGCAACCCATAGTAACAAATCGGTTAACATATTGTCTGAATATGCTTTGTATCCATCCATCTTTGGATTTTCCTGCTGAATTGATGGTTGATTTATTGTGCTCAATTGCATTTTTGGTCTCGTCAAGTGAGGTAACTGCTGATGGCTTGGCCTTCACAGCTCGTTTGCTCAATAGTGGCATGCAAAAGGTTTATTCTGTTAATAGGACGATATGTGTAACCAAGCTCCCTGTAGCATTCAATGCGCTCAAAGATATTTTGCTATCTGGGAGAGAGGAAGCAATCCATGCGGCCATTAATTCATTGAAGGGTTTGATACAATTTTGCATTGATGAAAGTCTGATCAAAGATGGTGTGGATCATATTTTATTGGATGCAAGTACGGGGAGCAGAACAACTGGGCCAACTATCATTGAGAAAATATGTAGTACTATAGAAAGCTTACTTGATTATCATTATACACCTGTCATGGACTTAGTTTTCCAAGTTTTCACGGCAATATTTGAGAAATTAGGGAACTATTCTATGTATCTGCTTAGAGGTGCGTTTTCAAGCTTTGCAGATATGCAAAAGTTACCGGACAAAGACTTTCCTTTCCGGAAAGAGCTACACGAGTGTCTTGGATCAGCTCTAAGCACTATGGGGCCTGAAACTTTCTTAGGCGTTTTGCCTCTTAATTTGGATGTAAACGATCAATCTGAGGCAAATGTTTGGCTTTTACCAATTTTGAGGCAGTTTACTGTTGGTGCACGCTTAAGCTTTTTTCTAGAGTCAATTTGGAGTATGATAGGAGAGATTAAACAAAAGACTGTCACGCTTGAGCGGCAAGGACAAATTGTTTCGTCAAGGAATATGGATGCAGTTGTGTATTCTTTGTTCTCCTTGCTGCCTTCCTTCTGTAACTATCCTTTGGATACAGCTGAGTGCTTCAAGGATCTAGAAAGTGTGCTCTCTGTTGCTCTTCGTGAAGAACCTGATGTTCGTGGCATTATATGTTCTAGTTTGCAGAGGCTTATACAACAAAACAAAAGGATGCTGGAAGGAAAGAGTGATTTGTCATGCTGTGAAGAAAGTATTGCATTAAAGCACTCCATAGCTCGATATAATCCACAGGTGGCAGCGGATAACTTGACTGCTATTAAGTCATCTGGTCGTGAGTTGTTGTCTGTCTTGTCTAGCCTCTTCCTTAAGTCTACAACAGATGATGGTGGTTCTTTGCAGTCGACAATTGGTGAGGTTGCGTCAATATCAGATAAAGATGTAGTGTCGAGGTTCTTCAAGAGTACAATGCAGAAACTTTTGAAGGCGACTCAAGAAGCTTCCAAACCAAAAGATTTGAAGTTTTCCAATTCAATGGAGACTAATAGTTCAACAGAAGAAAAATCACCCTCTTTACTAAGGGCACGATTATTTGACTTGGCAGTTTCCCTTTTGCCTGGTTTGGATACAAAGGAAATTGATCTTTTATTTGTTGCAATAAAGCCTGCACTAAAGGATAGCGAAGGTTTGGTGCAAAAGAAGGCATACAGAGTTCTCTCCATAATTCTTAAGAACCGTGACAATTTTATTTTGGAGAGATTTGAAGAATTGCTTGCACTTATGATGGAAGTACTGCCTTCTTGTCATTTTTCGGCCAAACGACACAGACTAGACTGTCTTTTCTTTTTGATAATTCAAGTATCTAAGGAGGGATCAGAGTTAAGGCAATACAACATCATTAGTTCCTTCTTAACCGAAATAATACTTGCACTAAAAGAGAGCATGACGCATTTGGCAATTGCTAACAAAAAGACAAGAAACAGAGCTTATGATATTCTTGTTCAAATTGGCCATGCATGTACACATGAAGAGAAAGGAGGAAAAGTGGAGAATTTGTACCATTTTTTTAATATGTCATCTAGGTTGGGAACAGTGTGTAATCTTATGAATATTCAGAACCCAGCCTTTTTGGTCAGATTCGATTCCTGTGTTGCAGTTAATAGCTATAAACATTGTCCTGTAGCAGGAGGTCTTGCTGGTGAAACTCCTCATATGATCAGTGCTTCAATGAAAGGCGTAGCTCGATTGGCTTATGAATTTTCAGAACTTGTCTCTCTTGCTTCAAATTTACTTCCTGCCACGTTTCTGCTTCTTCAGAGAAAGAATAGAGAGATAATCAAGGCTAATTTAGGTTTTCTGAAGGTAATGGTGGCAAAGTCATCAGTTGATGGGCTTAGTATGAACTTAACGAGTTTGGTAGATGGCCTATTGAAGTGGCAAGATGAGACGAAAAACCACTTCAAATCTAAAGTGAAGTCGCTCCTGGAGATGCTAGTCAGGAAATGTGGTATAGATGCTGTTAAGGCCGTGATGCCCGAAGAACACATGAGACTTCTTACTAACATTCGAAAGATCAAGGAGCGGAAGGAACGAAAAACTAAATCCGATGACGCCAAATCTCTGGTGTCAAAAACTACATCAAGGATTAGTGGATGGAATCATACAACAATATTTTCCAACTTTGGCAATGAGGAATCCGAAGATGGTGCTGAATTTTCTGAGAATGACAGTGATGTAGAACTCAGAGAACAGAGAAAGGGTTCCTCAAAGTTTGTTTCCAAAGCTGCTTCACACTGGTCCAAGAGTAGAGCCAAAAATTGTCCTGATCACTTGTGCGATCAATTAGAAGAAGATCCTCTTGACTTGCTGGACCAACACCGGACACGATCAGCTCTTCAATCATCAATGTCTCATAAACGAAAGCTAAGCTCGGACGAAGAAATTGAGATAGACTCTGAGGGGCGAATTATTGTTAGTGAGGAAGATAAGCCTAAGAAAACAGCAGCGACTTCCAATTCAGATGCAAGAAGCAAAACGGGCAACCTCTCTTCTATTAATCCGAGGAAAACACAGAAGAGAAGGAAAACATCTGATTCAGGGTGGGCCTACACAGGAACTGAGTATGCTAGCAAGAAGGCAAGTGGGGATGTGAAGAGAAAAGATAAACTTGAACCGTATGCATATTGGCCACTCGACCGGAAGATGATGAGTCGTAGGCCCGAGCATCGAGCTGCTGCCAGAAATGGAATGGCGAGGGTGGTTAGGATGACCAAGAAACTTGAAGGTAAGAGTGCCTCGAGCCTATTGTCAAGTAAAGGGTTGAAGTTTAAGAAGGCGCATAAGAAAAGTGGCAAGAGAAAGTCGTAA 3939 40.7 MEGAVCPADASNDDFCSFILNRFSSSTNEYHMNACAVIGAMSQELKDQNLSTTPIAYFGATLSSLNRISSESESPVHLLDALLAIFSLLLPRISPAILKKKRELISEVLIRSLHSPSLTVGAATSGLKCISHLLVINDNVSWSDISNLFNILLGFATDSRHEVRRQSHVSIRDFLLKSQKTVLLAEASEVITNTFKRSILFAGGKNTNSSEGSKEAQKVLYILDALQECIPHISGKCKTSILEYFKSLLKLQQPIVTNRLTYCLNMLCIHPSLDFPAELMVDLLCSIAFLVSSSEVTADGLAFTARLLNSGMQKVYSVNRTICVTKLPVAFNALKDILLSGREEAIHAAINSLKGLIQFCIDESLIKDGVDHILLDASTGSRTTGPTIIEKICSTIESLLDYHYTPVMDLVFQVFTAIFEKLGNYSMYLLRGAFSSFADMQKLPDKDFPFRKELHECLGSALSTMGPETFLGVLPLNLDVNDQSEANVWLLPILRQFTVGARLSFFLESIWSMIGEIKQKTVTLERQGQIVSSRNMDAVVYSLFSLLPSFCNYPLDTAECFKDLESVLSVALREEPDVRGIICSSLQRLIQQNKRMLEGKSDLSCCEESIALKHSIARYNPQVAADNLTAIKSSGRELLSVLSSLFLKSTTDDGGSLQSTIGEVASISDKDVVSRFFKSTMQKLLKATQEASKPKDLKFSNSMETNSSTEEKSPSLLRARLFDLAVSLLPGLDTKEIDLLFVAIKPALKDSEGLVQKKAYRVLSIILKNRDNFILERFEELLALMMEVLPSCHFSAKRHRLDCLFFLIIQVSKEGSELRQYNIISSFLTEIILALKESMTHLAIANKKTRNRAYDILVQIGHACTHEEKGGKVENLYHFFNMSSRLGTVCNLMNIQNPAFLVRFDSCVAVNSYKHCPVAGGLAGETPHMISASMKGVARLAYEFSELVSLASNLLPATFLLLQRKNREIIKANLGFLKVMVAKSSVDGLSMNLTSLVDGLLKWQDETKNHFKSKVKSLLEMLVRKCGIDAVKAVMPEEHMRLLTNIRKIKERKERKTKSDDAKSLVSKTTSRISGWNHTTIFSNFGNEESEDGAEFSENDSDVELREQRKGSSKFVSKAASHWSKSRAKNCPDHLCDQLEEDPLDLLDQHRTRSALQSSMSHKRKLSSDEEIEIDSEGRIIVSEEDKPKKTAATSNSDARSKTGNLSSINPRKTQKRRKTSDSGWAYTGTEYASKKASGDVKRKDKLEPYAYWPLDRKMMSRRPEHRAAARNGMARVVRMTKKLEGKSASSLLSSKGLKFKKAHKKSGKRKS 1312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 51314192 51321471 - BLOR01352 Blo01g01352 55792

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01352 1312 MobiDBLite consensus disorder prediction 1084 1114 - -
Blo01g01352 1312 MobiDBLite consensus disorder prediction 1194 1211 - -
Blo01g01352 1312 MobiDBLite consensus disorder prediction 1298 1312 - -
Blo01g01352 1312 MobiDBLite consensus disorder prediction 1282 1312 - -
Blo01g01352 1312 MobiDBLite consensus disorder prediction 1099 1113 - -
Blo01g01352 1312 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 12 1272 - -
Blo01g01352 1312 PANTHER RRP12-LIKE PROTEIN 12 1272 - -
Blo01g01352 1312 MobiDBLite consensus disorder prediction 1163 1193 - -
Blo01g01352 1312 MobiDBLite consensus disorder prediction 1153 1248 - -
Blo01g01352 1312 Pfam NUC173 domain 391 593 IPR012978 -
Blo01g01352 1312 SUPERFAMILY ARM repeat 18 1018 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01352 K14794 RRP12; ribosomal RNA-processing protein 12 - jre:108980434 1459.51
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g133 Blo01g01352 . . . . . . . Cmo05g01015 . . . . . . . . Bhi04g01548 Tan02g1549 . . Hepe08g1467 . . . . . . . . . . . . Cone20ag0045 . . . Cme03g01364 . . . . . . . . . . . . Cma05g00997 Car05g00879 . Cpe11g00806 . . . . . . . . . . . . . . . Lsi08g00811 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008437 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01352 Blo_Chr01 FPKM 2.301136 2.289235 100.982185 107.201721 8.717157 7.155964 8.955 6.086452 6.566746 4.652367