Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01355 ATGTCTGCTCCTGCTCCGCCCGAAACCCCCATGGAAGAACAGAACCAGCTGCCTTCTGATAAAGAAGATTCGTCAAAATCTTTAAGCAAAAAAGCTGCTAAGAAAGAAGCCAAGAAACTAGAGAAGCAACGCCCTCGCCAAGAATCTGCTCAATCTTCTTTGTCATCTCTCTCTGTGGAGGATGACCCGCTTTCCGCCAATTACGGAGACGTTCCTCTCTCTGACCTCCAATCCAAGGAGGTTCAGGATATCCACGACTGGACTGAGGTCAGGGCTCTTACCGAAGACCTGAAGGACAAGTCTGTGCTGTTACGCGGCCGCGTACTGACGATCCGAGCCGTTGGCAAGAAGATGGCTTTCCTTGTGCTCAGAGAGAGTGGGTTCACTGTCCAATGCGTTGTCACTGAACAAGTCGAATACGTTAGCCGCCAAATGGTTAGGTTTGTGGCGGGGTTGAGTCGTGAGTCAATTATTGATATTGAAGGGGTTGTATCCGTGCCTGGGGTCCCAATCAAAGGGGCCACACAACAGATGCTACTTAACGATAAGAAATGGACCCTAGATGTTCTATTCGATGTCAGAAAAGAAGTAGAAATTCAAGCGAGGAAATTATTTTGCATAAGCAGGGCCATGCCAACTCTACCTATAAATATAGAGGATGCTGCTAGAAGTGAAGCTGAAATCGAAAAGGCACTGGCTGAAGATAAGCAACTTGTACGTGTTAATCAAGATACAAGATTAAATTTCAGAGTTCTTGATATACGGATACCGTCTAATCAGGGAATCTTCTATATTCAATTTCAAGTTGGAACTATATTTAGACAATTCTTGATATCCGAAGGCTTTGTTGAGATCCACACACCAAAATTGATAGCTGGCTCTAGTGAAGGTGGTTCTTCTGTTTTTAAGTTGGATTACAAAGGGCAGCCAGCATGCTTGGCACAGTCACCTCAACTTCATAAGCAAATGGCAATTTGTGGAGATTTTCGAAGAGTGTTTGAGATTGGTCCTGTTTTTAGGGCAGAGGACTCAAATACTCACCGTCACTTATGTGAGTTTACGGGTCTTGATGTTGAAATGCAGATTAAGAAGCATTATTTTGAGGTGATCGACATCGTTGATCGTTTATTTGTATCAATGTTTGACAGTTTAAACCAGAACTGTGAGGAGCAGCTTAAAGCTGTGGGGAGGCAATATCCTTTTGAACCTTTGAAGGTCTCATGGTCATTTTTGCACTTAATCTTAACAAGATTAATATTGGTTTATTTGAGAAAGACTCTACGACTTACATTTGAAGAAGGGATTCAAATGCTTAAGGATGCTGGGGTTGAAGTTGATCCTCTTGGTGACCTGAATACTGAGACGGAGAAGAAGTTGGGTCAACTAGTTTTACAGAAGTATGGGACAGAATTTTACATACTTCACCGGTATCCTTTGGCTGTCAGACCATTCTATACGATGCCTTGCTATGATAATCCAGCATACAGTAACTCCTTTGATGTTTTTATACGAGGAGAGGAGATAATTTCAGGTGCTCAGCGCGTACATCTGCCCGAATTCCTGGCTGAACGTGCCCAAGCATGCGGCATTGACGTGAAAACAATTGAGACATACATTGATTCCTTCAGATACGGAGCTCCTCCACATGGCGGATTTGGAGTTGGGTTGGAGCGGGTGGTAATGCTTTTCTGTGGATTGAACAACATTCGCAAAACATCATTGTTCCCTCGTGACCCCCAAAGGCTTGCCCCTTGA 1755 43.82 MSAPAPPETPMEEQNQLPSDKEDSSKSLSKKAAKKEAKKLEKQRPRQESAQSSLSSLSVEDDPLSANYGDVPLSDLQSKEVQDIHDWTEVRALTEDLKDKSVLLRGRVLTIRAVGKKMAFLVLRESGFTVQCVVTEQVEYVSRQMVRFVAGLSRESIIDIEGVVSVPGVPIKGATQQMLLNDKKWTLDVLFDVRKEVEIQARKLFCISRAMPTLPINIEDAARSEAEIEKALAEDKQLVRVNQDTRLNFRVLDIRIPSNQGIFYIQFQVGTIFRQFLISEGFVEIHTPKLIAGSSEGGSSVFKLDYKGQPACLAQSPQLHKQMAICGDFRRVFEIGPVFRAEDSNTHRHLCEFTGLDVEMQIKKHYFEVIDIVDRLFVSMFDSLNQNCEEQLKAVGRQYPFEPLKVSWSFLHLILTRLILVYLRKTLRLTFEEGIQMLKDAGVEVDPLGDLNTETEKKLGQLVLQKYGTEFYILHRYPLAVRPFYTMPCYDNPAYSNSFDVFIRGEEIISGAQRVHLPEFLAERAQACGIDVKTIETYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPQRLAP 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 51504688 51508492 - BLOR01355 Blo01g01355 55795

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01355 584 CDD AspRS_cyto_N 102 220 - -
Blo01g01355 584 TIGRFAM aspS_nondisc: aspartate--tRNA(Asn) ligase 93 584 IPR004523 GO:0000166|GO:0004815|GO:0005524|GO:0005737|GO:0006422
Blo01g01355 584 MobiDBLite consensus disorder prediction 15 46 - -
Blo01g01355 584 PANTHER ASPARTYL-TRNA SYNTHETASE 21 584 IPR004523 GO:0000166|GO:0004815|GO:0005524|GO:0005737|GO:0006422
Blo01g01355 584 CDD AsxRS_core 240 580 - -
Blo01g01355 584 Hamap Aspartate--tRNA(Asp) ligase [aspS]. 89 584 IPR004523 GO:0000166|GO:0004815|GO:0005524|GO:0005737|GO:0006422
Blo01g01355 584 Pfam OB-fold nucleic acid binding domain 102 203 IPR004365 GO:0003676
Blo01g01355 584 Gene3D Bira Bifunctional Protein; Domain 2 215 584 IPR045864 -
Blo01g01355 584 SUPERFAMILY Nucleic acid-binding proteins 66 177 IPR012340 -
Blo01g01355 584 MobiDBLite consensus disorder prediction 47 61 - -
Blo01g01355 584 PANTHER ASPARTATE--TRNA LIGASE, CYTOPLASMIC 21 584 - -
Blo01g01355 584 Pfam tRNA synthetases class II (D, K and N) 243 578 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Blo01g01355 584 Coils Coil 30 50 - -
Blo01g01355 584 Gene3D - 60 213 IPR012340 -
Blo01g01355 584 PRINTS Aspartyl-tRNA synthetase signature 499 515 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Blo01g01355 584 PRINTS Aspartyl-tRNA synthetase signature 330 343 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Blo01g01355 584 PRINTS Aspartyl-tRNA synthetase signature 313 325 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Blo01g01355 584 PRINTS Aspartyl-tRNA synthetase signature 539 553 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Blo01g01355 584 SUPERFAMILY Class II aaRS and biotin synthetases 237 583 IPR045864 -
Blo01g01355 584 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 273 576 IPR006195 -
Blo01g01355 584 MobiDBLite consensus disorder prediction 1 61 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01355 K22503 DARS1; aspartyl-tRNA synthetase [EC:6.1.1.12] - csv:101222217 850.892
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00679 Blo-Chr1:7852107 Blo01g01355 Blo-Chr1:51504688 3.16E-17 dispersed
Blo01g01355 Blo-Chr1:51504688 Blo14g00327 Blo-Chr14:3373565 1.46E-13 dispersed
Blo01g00538 Blo-Chr1:5926906 Blo01g01355 Blo-Chr1:51504688 1.80E-23 transposed
Blo02g01037 Blo-Chr2:40209719 Blo01g01355 Blo-Chr1:51504688 3.72E-08 transposed
Blo01g01355 Blo-Chr1:51504688 Blo12g01093 Blo-Chr12:28643379 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g255 Blo01g01355 . Bda01g00715 . . . . Bma01g02143 . . . . Car09g00436 . . . Cpe06g00372 . . . . . . . . . . . . . . Cone4ag1839 Cone7ag1745 . . Lsi04g02172 Csa03g04379 Chy04g00323 . . . . . . . . . Sed05g1660 . Cmo09g00498 . . . . . . Bhi09g02315 Tan01g3700 Cmetu04g3175 . Hepe01g2064 Mch11g0600 . . . . . . . . . . . Cme04g00363
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007164 1 1 2 1 1 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01355 Blo_Chr01 FPKM 3.426117 2.944343 0.0 0.798291 0.0 0.0 0.711284 0.0 0.0 0.0