Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01360 ATGGTACTTGCAATTGGGGATGTGCAAATTCATTCTAATGGTGCAATTGTTGGGTTAGAAGAGATGGAACATTTAATCTGCAAAGAAGACAAAACAAAGGCTATTTATACTGACATACCAGATTGCCACCATTTGCGTAATGAAGAATCTGAAGATTGTACAAAAACCAATAAGCTTTTGGAGAGGGGATTTCTGCAATATGGATGTCCGCATTACAAGAGGAGGTGCCGAATCAGAGCCCCTTGTTGCAATGAAATCTTTGATTGCCGTCACTGTCATAACGAGACTAAAAATGCTATTGATTTTGATCCAATGGAAAGACATGACATTCCACGCCATAAAATCAAACAGGTAATCTGCTCACTTTGTGGCACGGAACAAGAGGTTCGGCAGGTTTGCATCAAATGTGGTGTTTGTATGGGGAAATACTTCTGTGAGTCCTGCAAGCTGTTTGATGATGATATATCCAAAAATCAGTATCACTGTGATGGTTGTGGAATTTGTAGAATTGGCGGCCGTGAGAATTTTTTCCATTGCTACAAGTGTGGTTGCTGCTATTCAATTCTTCTGAAAAATAGTCACCCTTGTGTTGAAGGAGCAATGCATCACGACTGCCCTGTATGCTTTGAGTTTCTGTTCGACACTAGGAATGATGTTACTGTTTTGCCCTGTGGACATACCATTCACAAAAACTGCCTGAAGGAGATGAGAGAGCACTTCCAATACGTTTGCCCTCTCTGCTCCAAGTCAGTTTGTGACATGTCCAAAGTATGGGAAAAATTTGACCTGGAAATTGCAGCTACGCCAATGCCCGAGGCTTATCAGAACAAAAGAGTTTGGATACTCTGCAATGACTGTGGAAAGACATCTCAAGTGCAGTACCATGCTGTTGCTCAGAAGTGCTTGAATTGCAATGTCGCCATGGCCATGGCCATGGCCATGGCCATGTCCATGTCACCTTCAATGATCATATGGTCGGCCATGGCCATGTCCATGTCACCTTCAATGATCATATGGTTCTCTGAAGCATGTGATGTCGCATCAGCCTGTTGGCTCAAATTGCAAGAAACCATGCCAAAAAAGAATTCGTCGGAGAAAGAGAGCTCGTCAATGGACCAACTCGAACGATTAATCGGATTGGAAGAGGAGATGAAGTACCTCCAAGAGATACCTGATAACGTTCGTTTCCTGGAGGAACGAATGAAGGAAATTGCTGAATTTCTTAATGAGGTAGCTGCTATCCACAAGAGGATAGACTCCATCCCGATCCAAGAGCTGCTAGATTGA 1287 43.05 MVLAIGDVQIHSNGAIVGLEEMEHLICKEDKTKAIYTDIPDCHHLRNEESEDCTKTNKLLERGFLQYGCPHYKRRCRIRAPCCNEIFDCRHCHNETKNAIDFDPMERHDIPRHKIKQVICSLCGTEQEVRQVCIKCGVCMGKYFCESCKLFDDDISKNQYHCDGCGICRIGGRENFFHCYKCGCCYSILLKNSHPCVEGAMHHDCPVCFEFLFDTRNDVTVLPCGHTIHKNCLKEMREHFQYVCPLCSKSVCDMSKVWEKFDLEIAATPMPEAYQNKRVWILCNDCGKTSQVQYHAVAQKCLNCNVAMAMAMAMAMSMSPSMIIWSAMAMSMSPSMIIWFSEACDVASACWLKLQETMPKKNSSEKESSSMDQLERLIGLEEEMKYLQEIPDNVRFLEERMKEIAEFLNEVAAIHKRIDSIPIQELLD 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 51674407 51678992 - BLOR01360 Blo01g01360 55800

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01360 428 ProSiteProfiles Zinc finger CHY-type profile. 62 138 IPR008913 GO:0008270
Blo01g01360 428 Pfam Ring finger domain 204 247 IPR001841 -
Blo01g01360 428 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 35 306 - -
Blo01g01360 428 Pfam CHY zinc finger 69 150 IPR008913 GO:0008270
Blo01g01360 428 SUPERFAMILY CHY zinc finger-like 66 140 IPR037274 GO:0008270
Blo01g01360 428 PANTHER CHY-TYPE/CTCHY-TYPE/RING-TYPE ZINC FINGER PROTEIN 35 306 - -
Blo01g01360 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 250 IPR013083 -
Blo01g01360 428 SUPERFAMILY Zinc hairpin stack 141 198 IPR037275 -
Blo01g01360 428 ProSiteProfiles Zinc finger RING-type profile. 205 248 IPR001841 -
Blo01g01360 428 Gene3D - 276 306 - -
Blo01g01360 428 Pfam Zinc-ribbon 252 305 IPR039512 -
Blo01g01360 428 SUPERFAMILY RING/U-box 204 253 - -
Blo01g01360 428 ProSiteProfiles Zinc finger CTCHY-type profile. 140 204 IPR017921 -
Blo01g01360 428 SMART ring_2 205 247 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01360 K10144 RCHY1, PIRH2; RING finger and CHY zinc finger domain-containing protein 1 [EC:2.3.2.27] - csv:101203062 501.516
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01360 Blo-Chr1:51674407 Blo15g00295 Blo-Chr15:3279227 1.16E-49 dispersed
Blo01g01360 Blo-Chr1:51674407 Blo15g00066 Blo-Chr15:557250 3.21E-48 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g389 Blo01g01360 . Bda01g00720 . . . . Bma01g02148 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00331 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme04g00372
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000646 2 6 1 2 2 3 4 3 3 3 3 3 4 3 3 4 3 4 4 3 3 3 4 3 3 4 3 8 4 3 101
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01360 Blo_Chr01 FPKM 39.710854 45.936016 12.25398 13.991568 12.794361 12.755188 12.592689 14.608393 13.995702 15.956384