Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01364 ATGTCCAACAACCGTGTGCCACAGCAGTTTGCAATACCATCCATCGAGATTGGCCATTTGCAGTCTAGTTCTAACAACATGGACTTACCTGTATCAGAACTGCATGGATCATTTGGATCATTACTCTATGAACCTTCATTTAGTCAATATTCATTAGCATCAAAACCAAAGGAAGTGATGGCATCTGTTTCAGGTACTCCTCTGTCACAAAATTTACTAGTATCACATATGCCGAAAAGCCAGAATGATTCGAAGCCTACTAATCTAGTGTCACAGAAAATTCAAGGATCCAACTACCAATTTGGAATGGTTAATAACATGATAGGAATGGATGGTTCTAAGAAGTTTTCACTGCCTGCTAAAAGGAAATCTGCATTGGAACCTATACCTCATAGTCTTACCTCACTGCAGCCATCAGTCCCTAACAAGCGACCTGAACAGTTGGGATATAGACCTTGGTTACAAAATGTCTCTGGAATAAACAAAAGTGTCTTGGAGATGCAATCTACATTCCCAACACCAGAGATATCTCCTGGATCAAGTAAGAAAGTAGCAATTGAAACTGTTTCTGTTAAATCTGGACCACAACGATCAACTATTAAAACTCAGACTACAATGGTATTGCCAAACATTCGGCCCGAGTCATTTGTATTAGTAAGGTCCAAAATGAAGGAATCTTTAGCTTTGGCGCTGGGCTTGGCTTCTCAGCAGGTTGACCGCTCCTTAGAAACTGGCAAAAGCTGTCAAAAAGATGGTGAAAGAATGGTGAGTCTGAGGGAGGAATATTCTCAACCTACTGGTCCGGTTTGTACTGTTCCGGATGTTGTTAATAATGTAGTGGAGTTATGGGGGGGAAATTTATCTGTGAAAGAAGACGTTTCTGCTTGTCAAGGCAATAAAATCTGTGGTAAATCATATAATTTTTGTGAAAATTCTGATAAGGGAAATACACACACTTTGATACCTGATGCACCAGAGTTTCCTCCAACTGATGTTTTACCCAATGCAGATATTCTTTGCAGGGATAACATCAATGTCAAAGATGAACTTCTTCAAGGGAATGGCCTTACCTGGGTTTTGGATCCTGACGTGCAGGTAGTTGAAATGGAGCTTCAATCTGATAAAAGTAAAAAGCTGAATCCCGAGGTAATGGATGGAGATCAAAGGGGAAAAATTGTTCAATCCCCTGTAATTCTGGCATCTAAAATTGAAGCGGAACTGTACAAATTATATGGGGGTGTGAATAAAAAATACAAAGAGAAAGGAAGGTCCCTTTTGTTCAATTTAAAAGATCGAAGTAACCCTGAACTAGGGGAGAGGGTTATCTCAGGTGAAATCCTTCCAGAAAGATTGTGCTCAATGTCTGCAGAGGAACTTGCTTCTAAGGAGCTTTCCCAGTGGCGAATGGCTAAGGCAGAAGAGCTTGCTCAAATGGTCGTGCTACCCGACTCAGAAGTTGATATTAGGCGTTTGGTGAGAAAGACCCATAAAGGTGAATTTCAAGTTGAAATGGAACATGATAGTTTTACTGAGCTTCCATCTGCTGTAAGTTCATTTGCTCAGAGTCCGTCAAACGACAATAAGGCAGAATTCTCTTCTTCCACTATATCAGCTCACGATGCTGATGAGAAAAAGGACGAAGAAACCAGTGATCATCCGTGTACCTTCACAATTCCATCAAATGAGGGTTCTGACTTGCTGCAAGGGCTCATGGTTGATGATGCATTGAAGGATGCTGAATCACTTCCTCCAATTGTCTCGCTGGATGAGTTCATGGAGTCCCTGAATACGGAGCCCCCTTTTGAAAATTTGTCAGAGGATACTGGGAAATTGAAGCCAGTATTGAGTGCGCATCACTCTAAGACTTGTTCTGAGACAAATGTTTCTGCTCCAAAGACAGAAGATTTCACTGAGAATGTACCCGAAGAACATAATGAACATAGTGATGGTTCTGCTACTGATCTTCAAGCAGACGAAAGACCTAGTGGTAATCATGCTAGTCCTCACCCCGATGTTGGTGGTTTCAATACCAAAAACAATGATGCCATTCGGAAATCTAGTGAAGGACTGAAAAAGTCAGGAATTTTGTCTATTGATAGCCCATCCAATGCAGACCTTGTGTGGAATGGATCACTTCAACTTAATGTATCTTCTATGACCTCAACTATAGGAATTTTTCTAAGTGGCGAAAAAGTATCAGCAAAAGATTGGCCTCTTGTGCTTGACATTAAGGGTAGAGTCAGACTAGATGCATTCGAGAAGTTCCTCCTGAACCTTCCATTGTCCAGAAGCCGTGCTGTCATGATAATGATTGTAAAGGGGATAGATGGAATGGAACTATTCCGTGAAATGGGTGAGTTCCTAAATTGGGTTGTTCATTTTGAGTTGAAGGAAGGGTGTCCAGAAAATGAGCGATCCAGTCTTCGTGAGGTTGCTGATTCCTATGTTTTGGACGAGCGAGTAGGTTTTGCCGAACCTGTTTCAGGGGTGGAATTATATTTGTGCCCACTCCACAGAAAAACACTTGAAATGATAAGCAAGATCATGTCGAAGGAACATGCTGTCGCTGTTAATGCTATTGATAATGGCTTAATTGGTGTTGTTGGCTTGTCATTGACCAGTTATAAGTCCCTAGATGAAACGGACGACTGTGTCCCTCCTGGGTTTGGTCCGGCAGATAACCGAGACGAAGATGACCTTCCTGAATTTAATTTCTCTGTTCAGGGCCCTGTGAAGTCTCGGTTTCTCCCCCATTCGCAACAAACTCCCCAACCGATGGAGGAAATGAGAAAGCTTATACACAAGTATGGACAGACAAATGCCAACTTGGAAGGCATAAGGGAGGAAGAAGATGACATCCCGGAGTGGAATCCCGGCCAGGAGCGGAGGTTGCCATTGCCATATTTGCAAGTTCCCGTGAATGTTTCGGCCCCATCTCACCAAGATCCATGGCACATCCCAGCTAGAAGAGGCTTTTAA 2979 42.33 MSNNRVPQQFAIPSIEIGHLQSSSNNMDLPVSELHGSFGSLLYEPSFSQYSLASKPKEVMASVSGTPLSQNLLVSHMPKSQNDSKPTNLVSQKIQGSNYQFGMVNNMIGMDGSKKFSLPAKRKSALEPIPHSLTSLQPSVPNKRPEQLGYRPWLQNVSGINKSVLEMQSTFPTPEISPGSSKKVAIETVSVKSGPQRSTIKTQTTMVLPNIRPESFVLVRSKMKESLALALGLASQQVDRSLETGKSCQKDGERMVSLREEYSQPTGPVCTVPDVVNNVVELWGGNLSVKEDVSACQGNKICGKSYNFCENSDKGNTHTLIPDAPEFPPTDVLPNADILCRDNINVKDELLQGNGLTWVLDPDVQVVEMELQSDKSKKLNPEVMDGDQRGKIVQSPVILASKIEAELYKLYGGVNKKYKEKGRSLLFNLKDRSNPELGERVISGEILPERLCSMSAEELASKELSQWRMAKAEELAQMVVLPDSEVDIRRLVRKTHKGEFQVEMEHDSFTELPSAVSSFAQSPSNDNKAEFSSSTISAHDADEKKDEETSDHPCTFTIPSNEGSDLLQGLMVDDALKDAESLPPIVSLDEFMESLNTEPPFENLSEDTGKLKPVLSAHHSKTCSETNVSAPKTEDFTENVPEEHNEHSDGSATDLQADERPSGNHASPHPDVGGFNTKNNDAIRKSSEGLKKSGILSIDSPSNADLVWNGSLQLNVSSMTSTIGIFLSGEKVSAKDWPLVLDIKGRVRLDAFEKFLLNLPLSRSRAVMIMIVKGIDGMELFREMGEFLNWVVHFELKEGCPENERSSLREVADSYVLDERVGFAEPVSGVELYLCPLHRKTLEMISKIMSKEHAVAVNAIDNGLIGVVGLSLTSYKSLDETDDCVPPGFGPADNRDEDDLPEFNFSVQGPVKSRFLPHSQQTPQPMEEMRKLIHKYGQTNANLEGIREEEDDIPEWNPGQERRLPLPYLQVPVNVSAPSHQDPWHIPARRGF 992
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 51793052 51797670 - BLOR01364 Blo01g01364 55804

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01364 992 Pfam Transcription factor S-II (TFIIS), central domain 390 475 IPR003618 GO:0006351
Blo01g01364 992 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 75 773 - -
Blo01g01364 992 Gene3D - 366 462 IPR036575 GO:0006351
Blo01g01364 992 PANTHER SPOC DOMAIN / TRANSCRIPTION ELONGATION FACTOR S-II PROTEIN 75 773 - -
Blo01g01364 992 Pfam SPOC domain 701 868 IPR012921 -
Blo01g01364 992 MobiDBLite consensus disorder prediction 516 553 - -
Blo01g01364 992 MobiDBLite consensus disorder prediction 618 682 - -
Blo01g01364 992 MobiDBLite consensus disorder prediction 516 536 - -
Blo01g01364 992 MobiDBLite consensus disorder prediction 636 654 - -
Blo01g01364 992 MobiDBLite consensus disorder prediction 619 634 - -
Blo01g01364 992 SMART mid_6 370 470 IPR003618 GO:0006351
Blo01g01364 992 PANTHER SPOC DOMAIN / TRANSCRIPTION ELONGATION FACTOR S-II PROTEIN 879 971 - -
Blo01g01364 992 PANTHER SPOC DOMAIN / TRANSCRIPTION ELONGATION FACTOR S-II PROTEIN 791 868 - -
Blo01g01364 992 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 879 971 - -
Blo01g01364 992 ProSiteProfiles TFIIS central domain profile. 372 487 IPR003618 GO:0006351
Blo01g01364 992 SUPERFAMILY Elongation factor TFIIS domain 2 392 463 IPR036575 GO:0006351
Blo01g01364 992 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 791 868 - -
Blo01g01364 992 MobiDBLite consensus disorder prediction 537 552 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01364 - - - qsu:111982988 687.952
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01364 Blo-Chr1:51793052 Blo04g00179 Blo-Chr4:1484934 1.03E-09 dispersed
Blo01g01364 Blo-Chr1:51793052 Blo17g00036 Blo-Chr17:205414 5.29E-170 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g372 Blo01g01364 . Bda01g00724 . . . . Bma01g02151 . . . . . . . . . . . . . . . . Cla05g01761 Cam05g1880 Cec05g1890 Cco05g1953 Clacu05g1870 Cmu05g1752 Cre05g1880 . Cone7ag1733 . . . . Chy04g00341 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme04g00380
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004122 1 1 1 1 1 1 2 1 1 1 1 1 2 1 0 2 1 4 2 1 1 1 1 2 1 1 1 6 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01364 Blo_Chr01 FPKM 3.804294 3.461217 5.52408 5.280268 4.240468 5.732053 6.123782 2.144728 1.991339 1.513377