Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01369 ATGCCGTACCGGGAGTCCCGCCAACTGCTCTCCCTAGTCCTCGCTCCCATTTCCAAACGGAACCCTAACCCTCGTCCTCTTAATTCTACCATTCGCTTTTTCTCTTCTTCCGATCAATCATGGCTTTCTGTTCCCGGCAATCCCCTAATCAAATGGCCTCTTCCCCTACCAACCTTCCATCCTCCCGTATCAACTGCTCTTCCAGTTTTAATTCCTGAGCTCGATATTAGTTCCGATTCGAAAACGCGAGATGAATTCTCCATTGTTGCCGGTCTTCTCACGGACCCGAAAACCTCTCCTGGTTCATCGCTTGAAAGTGCTTTGGACCAGACAGGAATTTTACCGAGTCTTGCTCTGTTGGAGGCAGTATTTGATCATTTTGACTCCTCCCCAAGATTGTTGCATTCACTATATCTCTGGGCCGAGAGTCAACATGGGTTTCGACCATCTCCTACTCTTTTCAGCTCCATGATCAACGCCCTTGCAAGATCGAGAGAGTTCGACTCCGCATGGTCTCTCATTATTCAAAGAGTACGCGACGATGCGGAACCTGCTTTGGTTACTGTTGATGTCTTTGCGATTTTGATCAGGCGATATGCTCGGGCAGGTATGCACCAGCCTGCTATTCGGGCTTTTGAATTTGCAAGCAATTTAACTACTATCCGTAACTTGAATACAGACAATTTGTTTGAGATCTTGTTGGATTCTTTTTGCAAGGAAGGGCATGTTAGGGTAGCTTCAGAGTACTTTGATAGGAAAGTGAGTTTGGATCCAAGTTGGCTTCCATCAATACGAGTTTATAATATACTTTTGAATGGATGGTTTCGATCAAGGAAGCTCAAACATGCTGAACAACTATGGATGGAGGTAAAGAAGAAGAATTTGAGACCAAGTGTAGTGACATATGGTACCCTTGTGGAAGGATACTGTAGAATGCGCCGTGCTGAAAGGGCAATTGAATTAGTGAATGAGATGAAGGGGGAAGGTCTTCAGCCAAATGCAATCATATACAACTCTATAGTTGATGCACTCGGGGAAGCTGGGCAGTTCAAAGAGGCATTGGGCATGTTAGAACGGTTTTTGGTTCTAGAATCAGGCCCGACTATCTCAACATACAATTCTCTTGTCAAGGGATTTTGTAAGGCAGGAGATCTTGTGGGTGCTAGCAAGATCCTTAAGATGATGATAAATAGGGGATTTTCACCAATTCCAACAACATATAATTACTTTTTTAAGTATTTCTCAAAAGTTGGAAAAATTGAAGAGAGCATGAATCTTTACAATAAGATGATTGAATCCGGCTATTCCCCTGATCGACTCACATACCAACTTTTGTTGAAAATGCTGTGTGAAGAGGAGAGACTGGAGTTGGCAGTTCAAGTTGCCAAGGAAATGAGAGCGAGGGGATATGATATGGACTTAGCTTCAAGCACCATGCTGATTCATTTACTTTGCAAGATGCATAAATTGGCAGAAGCGTTTGCAGAATTCAAGGACATGATTAGGAGAGGCTTGGTTCCTCAATATCTCACATTTCAGAGAATTACTGATGAATTGAATAAATGTGGGATGACTGATATGGCTTGTAAAGCACATGATATGATGTCATCGGTTCCCCACTCAACGAATTTACCTAATACATATGAAGGGGGCAGAGATTCAACTAGCTCAAGAAGAAATATAATGCGGAGAGCTCAAGCATTTTCTGTTATGTTAAAGGATTGTAATGATCCCCGGGAACTTGCTAGACGTAAAAATTCATCCGAGAATGTTAAATCAAGTGCAAATAAGTTGATAGATGATATTAAGACAAAAGCCAAGAAAATTTGA 1830 42.35 MPYRESRQLLSLVLAPISKRNPNPRPLNSTIRFFSSSDQSWLSVPGNPLIKWPLPLPTFHPPVSTALPVLIPELDISSDSKTRDEFSIVAGLLTDPKTSPGSSLESALDQTGILPSLALLEAVFDHFDSSPRLLHSLYLWAESQHGFRPSPTLFSSMINALARSREFDSAWSLIIQRVRDDAEPALVTVDVFAILIRRYARAGMHQPAIRAFEFASNLTTIRNLNTDNLFEILLDSFCKEGHVRVASEYFDRKVSLDPSWLPSIRVYNILLNGWFRSRKLKHAEQLWMEVKKKNLRPSVVTYGTLVEGYCRMRRAERAIELVNEMKGEGLQPNAIIYNSIVDALGEAGQFKEALGMLERFLVLESGPTISTYNSLVKGFCKAGDLVGASKILKMMINRGFSPIPTTYNYFFKYFSKVGKIEESMNLYNKMIESGYSPDRLTYQLLLKMLCEEERLELAVQVAKEMRARGYDMDLASSTMLIHLLCKMHKLAEAFAEFKDMIRRGLVPQYLTFQRITDELNKCGMTDMACKAHDMMSSVPHSTNLPNTYEGGRDSTSSRRNIMRRAQAFSVMLKDCNDPRELARRKNSSENVKSSANKLIDDIKTKAKKI 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 51907153 51909292 + BLOR01369 Blo01g01369 55809

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01369 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 150 184 IPR002885 -
Blo01g01369 609 MobiDBLite consensus disorder prediction 539 558 - -
Blo01g01369 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 263 297 IPR002885 -
Blo01g01369 609 SUPERFAMILY HCP-like 241 459 - -
Blo01g01369 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 438 472 IPR002885 -
Blo01g01369 609 Gene3D Tetratricopeptide repeat domain 364 426 IPR011990 GO:0005515
Blo01g01369 609 Gene3D Tetratricopeptide repeat domain 116 221 IPR011990 GO:0005515
Blo01g01369 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 473 507 IPR002885 -
Blo01g01369 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 403 437 IPR002885 -
Blo01g01369 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 332 IPR002885 -
Blo01g01369 609 Pfam PPR repeat family 406 450 IPR002885 -
Blo01g01369 609 Pfam PPR repeat family 262 311 IPR002885 -
Blo01g01369 609 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 97 605 - -
Blo01g01369 609 Pfam PPR repeat 367 395 IPR002885 -
Blo01g01369 609 Gene3D Tetratricopeptide repeat domain 427 605 IPR011990 GO:0005515
Blo01g01369 609 Gene3D Tetratricopeptide repeat domain 225 363 IPR011990 GO:0005515
Blo01g01369 609 Pfam PPR repeat 232 252 IPR002885 -
Blo01g01369 609 Pfam PPR repeat 154 174 IPR002885 -
Blo01g01369 609 Pfam PPR repeat 336 359 IPR002885 -
Blo01g01369 609 Pfam PPR repeat 478 505 IPR002885 -
Blo01g01369 609 PANTHER LEAF PROTEIN-LIKE 97 605 - -
Blo01g01369 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 402 IPR002885 -
Blo01g01369 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 367 IPR002885 -
Blo01g01369 609 TIGRFAM PPR: pentatricopeptide repeat domain 441 473 IPR002885 -
Blo01g01369 609 TIGRFAM PPR: pentatricopeptide repeat domain 371 402 IPR002885 -
Blo01g01369 609 TIGRFAM PPR: pentatricopeptide repeat domain 336 360 IPR002885 -
Blo01g01369 609 TIGRFAM PPR: pentatricopeptide repeat domain 406 438 IPR002885 -
Blo01g01369 609 TIGRFAM PPR: pentatricopeptide repeat domain 266 298 IPR002885 -
Blo01g01369 609 TIGRFAM PPR: pentatricopeptide repeat domain 300 334 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01369 - - - pper:18792309 797.349
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g01369 Blo12g00761 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01369 Blo-Chr1:51907153 Blo05g00853 Blo-Chr5:30881335 1.34E-07 dispersed
Blo01g01369 Blo-Chr1:51907153 Blo11g00737 Blo-Chr11:9909086 3.10E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g325 Blo01g01369 Blo12g00761 . Bda03g00424 . Bpe02g00176 Bma04g00400 Bma01g02550 . . Cma01g01602 . Car09g00487 . . . Cpe06g00422 . . . . . . . . . . . . . . Cone4ag1531 Cone7ag1422 . . Lsi04g02230 Csa03g04441 Chy04g00259 . . . . . . Bpe04g00072 . . Sed05g1604 Cmo01g01649 Cmo09g00545 Cma09g00555 . Car01g01222 . . Cpe02g00376 Bhi09g02426 Tan01g3784 Cmetu04g1897 . Hepe01g2123 Mch11g0661 . Cla08g01356 Cam08g1821 Cec08g1400 Cco08g1530 Clacu08g1516 . Cre08g1302 . . . Cme04g00290
Vvi4g433 Blo01g01369 . . . . . . . . . Cma01g01524 . . . . . . . . . . . . . Cla05g01756 . Cec05g1882 . Clacu05g1862 Cmu05g1743 Cre05g1873 . . . . Lsi04g02154 . . . . . . . . . . . . Cmo01g01576 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002447 1 3 2 2 2 2 2 1 1 2 1 2 2 2 2 2 2 3 2 1 2 2 2 2 2 2 2 4 3 2 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01369 Blo_Chr01 FPKM 8.761169 9.557199 9.808357 8.609809 23.806772 22.217491 23.831753 11.971294 12.446731 13.330142