Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01394 ATGGGCGTATCTAGTTGTCACATCATATGGCTATTCTATCTTTTTTTTAGTCTCGTCGTCTTCTTTTCTTCTTTTTACCATCACTATTTGCAGTCTGATCCCAACGTCAATCCTTCTTCTTCACCTTCGCAGATTTCCCATCAAAACAATCGCTTCCCTCTTAGAGTCAATGAAGGGGGAAGCAGATACGATAAATTTGAAAAGACGAAGATCTCTGGAGTGAAGAGTCTGGAGGAAGGACTTGCAAGAGCAAGAGCAGCCATTAAAGAAGCTACCAAGTCGCACAGTTATTCGTCGTTCAAGGAAGAAATTTTCCTCCCAAGAGGATCCGTTTACGTGAATCCATATGCATTTCATCAAAGCCACATTGAGATGGAGAAGAGATTCAAAGTATGGGTATATAAAGAAGGAGAGATGCCATTATTTCACAAGGGACCAATGGTGGACATATATTCTATTGAGGGTCAATTCATAGACGAAATGGAAAGTGGGAAGAGCCCATTTTCGGCTACAAACCCTAACGAATCCATTGCCTTCTTTCTTCCCGTCAGCATCGCCAATATCATTCGTTACGTTTACAGACCTTACACTGATTTCTCTCGCCGTCGTCTGCAGAACATTGTTGAAGATTACATTCATCTTGTCTCCCACAGATACCCGTTTTGGAATAGAACTAGTGGGGCTGATCATTTTCTTGTTTCCTGCCACGATTGGGCGCCGGACGTATCGTCTGGACACCCTAATCTTTTCAAAAACTTCGTCAGAGGTCTCTGCAACGCCAATGCTTCGGAAGGTTTTCAGCCCAACCGAGACGTGTCTTTACCGGAAATCAAAATTCCATATCGAAAACTGGGTCAGCCATTCCTCGATAGGCCAGTCGAAAACCGGTCAGTTCTTGCCTTCTTCGCCGGCGGCGACCACGGCAGCGTAAGAAAAATTCTCTTCAACCATTGGAGAAATAAAGACAATGACATACAAGTTCATGGGTATCTTCCAGAAAACCTAAGTTACCCAGAAATGATGGGACAGAGCAAGTATTGCTTGTGCCCGAGTGGTCATGAAGTGGCAAGCCCTAGAATAGTTGAGTCTATATACGCAGGCTGTGTCCCCGTCATAATTTCAGACAGCTACGTCTTGCCGTTCAGTGATGTTTTGAACTGGACGGAATTCTCGGTTCACGTGCCTCCAGCGAAGATTCCGGCAATCAAATCGATTCTGAATGGAATATCGTCAAGCGAGTATTTGAAGAAGCAAAAACTTGTTGTTCAAGTGCGACGGCATTTCGTGATTAATCGACCCTCTAAGCCTTATGATTTGTTGGATATGGTGATGCATTCAATATGGCTTAGGAGACTAGACATTTTTACTTGA 1371 43.76 MGVSSCHIIWLFYLFFSLVVFFSSFYHHYLQSDPNVNPSSSPSQISHQNNRFPLRVNEGGSRYDKFEKTKISGVKSLEEGLARARAAIKEATKSHSYSSFKEEIFLPRGSVYVNPYAFHQSHIEMEKRFKVWVYKEGEMPLFHKGPMVDIYSIEGQFIDEMESGKSPFSATNPNESIAFFLPVSIANIIRYVYRPYTDFSRRRLQNIVEDYIHLVSHRYPFWNRTSGADHFLVSCHDWAPDVSSGHPNLFKNFVRGLCNANASEGFQPNRDVSLPEIKIPYRKLGQPFLDRPVENRSVLAFFAGGDHGSVRKILFNHWRNKDNDIQVHGYLPENLSYPEMMGQSKYCLCPSGHEVASPRIVESIYAGCVPVIISDSYVLPFSDVLNWTEFSVHVPPAKIPAIKSILNGISSSEYLKKQKLVVQVRRHFVINRPSKPYDLLDMVMHSIWLRRLDIFT 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 52252600 52254429 - BLOR01394 Blo01g01394 55834

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01394 456 Coils Coil 74 94 - -
Blo01g01394 456 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 45 454 IPR004263 GO:0006486|GO:0016757
Blo01g01394 456 PANTHER PUTATIVE-RELATED 45 454 - -
Blo01g01394 456 Pfam Exostosin family 126 408 IPR040911 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01394 K18789 XGD1; xylogalacturonan beta-1,3-xylosyltransferase [EC:2.4.2.41] - twl:119996134 604.749
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00615 Blo-Chr1:6787468 Blo01g01394 Blo-Chr1:52252600 2.87E-152 dispersed
Blo01g01394 Blo-Chr1:52252600 Blo12g00503 Blo-Chr12:22901709 4.58E-110 dispersed
Blo01g01393 Blo-Chr1:52248760 Blo01g01394 Blo-Chr1:52252600 8.62E-124 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g504 Blo01g01394 . . . . Bpe02g00555 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1690 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002125 1 2 2 1 2 2 2 2 2 2 1 2 2 2 2 2 2 5 2 2 2 2 2 2 2 1 2 3 2 7 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01394 Blo_Chr01 FPKM 13.665838 14.478184 11.456285 12.349609 14.451979 13.830642 14.506473 12.539152 12.102875 14.748771