Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01397 ATGGCAGAGCCGACGGTCGAATCGCCCAGAGCCGACCGAAGTACCACATTCGCTGGCTGTTGGATCGACGAGGAGCATCCCTCGTCTGGATCGACGGCCAGGATTGAATCTGGCGTCCCTGCCAGATGCGATGACGGACAAAGATCCTTGGCCGTTGGATCGAGCGAGGGACGTGCCTCGGATCGACGGCTAGGATTTAATCCGCCTGCTCCTGCTGATAGATTTCATGCACTTATTTTGGCGGAGGCTATGATGTCCATGATGGGGGAAAGCTGGCTGATTGTTGAGAAGCACTCACTAGACATGTCAGATGCTCCAGCTAATAGGTGTCTATTACTTGTCCTAGAGCAATCAAGAGTTGAAGTTGCCGTTCTTCTCAACGAGCTGGCCTATATGAAATACGAAGCATCCAAGAACTCATCGTCCTCTATGGAGATAATTTGTTTAAAACAACAAAATGTGGCCGTTGCCTTTTCTTTGGTGGAGAAACTAATCAAGTTAATATCAAATGCTAATGAAAATCTGGGAAGGCTTATTGATGAAAACACTTGCACAAAGGTGATTATGGGGCTTAATGAGACAATTGGTGTAGTTCTAGAATACTTGCAAGATGCGAAGGAACATGGAGAAAGGAAAGGTGATGATCTTCTTGCCTCAGTACGAGTTATTGGGAGCTATCTTGCTGAAACCCCCGTTGCTTGTGAAGAGAAGGTTAGAGAACTCTTAGGGTATATGCTCTCTATTGAAGGTGAAGATGAACCGAGCCCTTTCTACTCAGTATGCTTTTTGCTTCCAATGCTATGTCAAATAATGATGAAGGTTGAAGGATGTAAAGCTTTGGCTACTTCTGGAGGATATAAAGCTGTTATTGATTGCCTTATAAGGTTGGTTGGACCAAATGCTGGTGGTATTGAAGATAATGGCTGTGTCTTCTTGGCTTGCGACACAATAATGAATTTTCTTTTGAAGGAGCAAGTTCAGTTTCCTTTTGACAAATCAGCTTTCGTTCATCTTTTGAAAGCGTTGGCGTCATGGACTGAGAATACTGACGATCCATCTGTTGTTATGATGGCTGCGAGTCTCTGCACAATGATATGTGATTACACATCTGAGGATGCTCTTGTTCGTGATCCAGACTTCGGTCGGAAAAACCTTGATAAGATGTCTCGGCTTTTTTCGAGAAGTTTGTCTTCAGTTGGGCAGGGCATGTCTGACGATGCAACTGACAATGCGGATCTTCTTGAGATTATAACTTCAGTTGCTCTAATTACTTATAATATAATCATCTCCGCCAATGCTCCTCTCAAGCAAGAACTGCCTGGTCCTTCGAAATCCTCTTCTTCTGCGTCCTTTTCTGTGGACCCCGTCATAAAGATGCCGCTTGACCGATCGAGAAGAAGCGCAGCTCCGAAGAGGCTCTTCCACACCGCGGTTACTGCCTCCGACTCTGTTTACAATACCTGGCAGTGTAGGGTCATGTACTACTGGTTCAGGAAGATGAAGGATGGACCTAATTCCGAGATGGGAGGGTTCACCAGGATATTGCACTCCGGTAAGCCCGATAAGCACATGGATGAAATCCCTACCTTCATCGCTCAGCCTTTACCTGCTGGAATGGATCGGGGTTATATAGTCCTCAACAGGCCTTGGGCATTTGTGCAGTGGCTTCAACAAGCGGACATTAAAGAAGATTATATTCTGATGTCAGAGCCAGATCATATAATTGTCAAGCCCATTCCAAACTTGTCGAAAGACGGACTTGGTGCTGCATTTCCCTTCTTCTATATTGAACCAAAAAAGTATCAATCTGAATTACGGAAGTACTTCCCTGAGGAAATGGGACCAATAACCAATATTGATCCAATAGGGAATTCTCCTGTCATCGTCCGAAGGGATTCTCTCAAGAAGATTGCCCCCACTTGGATGAATGTTTCCTTGGCAATGAAAAAGGATCCTGAAACAGACAAAGCTTTTGGTTGGGTGCTTGAAATGTATGCATATGCCGTTGCATCTGCTACACATGGAGTTGGTAACATCTTGTACAAGGACTTCATGATCCAGCCTCCATGGGATACAGAAATTGGGACGAAGTTCATTATTCATTACACTTACGGATGTGATTACAACATGAAGGGAGAACTAACCTATGGGAAAATTGGAGAATGGAGATTTGACAAACGTTCTTTTGATAACGTCGCACCTCCAAGAAACCTTCCTCTTCCTCCACCCGGTGTTCCTGAAAGCGTGGTGACACTAGTGAAAATGGTTAACGAAGCCACGAAAAACATCCCCAACTGGGGGTCTTAG 2307 44.91 MAEPTVESPRADRSTTFAGCWIDEEHPSSGSTARIESGVPARCDDGQRSLAVGSSEGRASDRRLGFNPPAPADRFHALILAEAMMSMMGESWLIVEKHSLDMSDAPANRCLLLVLEQSRVEVAVLLNELAYMKYEASKNSSSSMEIICLKQQNVAVAFSLVEKLIKLISNANENLGRLIDENTCTKVIMGLNETIGVVLEYLQDAKEHGERKGDDLLASVRVIGSYLAETPVACEEKVRELLGYMLSIEGEDEPSPFYSVCFLLPMLCQIMMKVEGCKALATSGGYKAVIDCLIRLVGPNAGGIEDNGCVFLACDTIMNFLLKEQVQFPFDKSAFVHLLKALASWTENTDDPSVVMMAASLCTMICDYTSEDALVRDPDFGRKNLDKMSRLFSRSLSSVGQGMSDDATDNADLLEIITSVALITYNIIISANAPLKQELPGPSKSSSSASFSVDPVIKMPLDRSRRSAAPKRLFHTAVTASDSVYNTWQCRVMYYWFRKMKDGPNSEMGGFTRILHSGKPDKHMDEIPTFIAQPLPAGMDRGYIVLNRPWAFVQWLQQADIKEDYILMSEPDHIIVKPIPNLSKDGLGAAFPFFYIEPKKYQSELRKYFPEEMGPITNIDPIGNSPVIVRRDSLKKIAPTWMNVSLAMKKDPETDKAFGWVLEMYAYAVASATHGVGNILYKDFMIQPPWDTEIGTKFIIHYTYGCDYNMKGELTYGKIGEWRFDKRSFDNVAPPRNLPLPPPGVPESVVTLVKMVNEATKNIPNWGS 768
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 52377294 52389757 - BLOR01397 Blo01g01397 55837

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01397 768 MobiDBLite consensus disorder prediction 1 40 - -
Blo01g01397 768 PANTHER PEPTIDYL SERINE ALPHA-GALACTOSYLTRANSFERASE 414 767 IPR044845 GO:0016757
Blo01g01397 768 Coils Coil 161 181 - -
Blo01g01397 768 SUPERFAMILY ARM repeat 149 373 IPR016024 -
Blo01g01397 768 Pfam Neurochondrin 69 364 IPR008709 -
Blo01g01397 768 PANTHER HYDROXYPROLINE O-ARABINOSYLTRANSFERASE 1 414 767 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01397 K20782 HPAT; hydroxyproline O-arabinosyltransferase [EC:2.4.2.58] - csv:101214063 647.121
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01397 Blo-Chr1:52377294 Blo04g00400 Blo-Chr4:3282869 1.69E-174 dispersed
Blo11g00638 Blo-Chr11:6607774 Blo01g01397 Blo-Chr1:52377294 8.90E-07 dispersed
Blo01g01397 Blo-Chr1:52377294 Blo04g00397 Blo-Chr4:3223679 2.02E-38 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g542 Blo01g01397 . Bda01g00754 . . . . . . . . . . . Sed01g1388 . . Bhi04g00025 Tan02g2741 Cmetu03g2008 . Hepe10g0236 . Lcy13g1806 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015288 0 0 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01397 Blo_Chr01 FPKM 55.800167 62.921841 55.403011 54.463463 56.827015 53.085251 57.573975 45.035862 43.683346 44.170761