Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01400 ATGGCCTACCACAACCATCTCTCGCAAGACCTTCCTCTCCACCGTTTCACGGAACAACCCCAGCAACAGCCAAACGCACCATTATCGGAAAATTCGTTGCGGACCATTTTACCTGATCAGTTGACCGCCCACGCTTCGCCGGACCCGACCTCTAAGAATCACCACCACCATCATCACCCACTTCAGACGGCGCCCAATTGGCTAAATAACGCACTCCTCCGCACCCAAAACCCTCATTCCCACTTCTCTACCGACACCACAACAACCGCTACCAACAACGCTAACACCAATTTCCTCAACCTCCATTCCACTGCGTCCGATTCCCCCGCTTCTCACTCCTCCAACCAGTGGCTCTCCCGCCCTATCCTTCACCGAAACCACAGCGACGTCATCGACGACGTGACCGCCGGAGACGCCTTAATAGGGGCCTCTACCGGAACGCTATCACACGAATCGGCTGAGTTGAAGAACAATGCTAACAGCGGGGAAGCTTTGAACAAGGGCGATGGTGTGGGGGTGGAAGCAGGCGGCGACGGAAGTGGTGGAGAAGGGATTGGGAGTTGGCAGAATGCGAGGTATAAGGCTGAGATTCTGGGTCATCCACTTTACGAGCAGCTTCTTTCAGCCCATGTCGCCTGTCTTCGAATTGCAACGCCCGTCGATCAGTTGCCGAGGATCGATGCACAGCTCGCACAGTCTCAGAACGTAGTGACAAAATACTCGGCCTTGAGTCATGGTGCTCAGTCAATGGTTGGGGACGACAAAGAGCTTGATCAGTTCATGACTCATTATGTTCTACTGCTTTGTTCCTTCAAAGATCAACTCCAACAACATGTTCGCGTCCATGCAATGGAAGCAGTGATGGCTTGTTGGGACATCGAGCAATCGCTTCAAAGCTTAACTGGAGTATCCCCAGGTGAAGGTACGGGTGCTACAATGTCCGATGACGACGACGACCAATTAGACAGCGATGCTAATTTGTTTGATGCAAGTTTGGACGGGCATGATACCATGGGATTTGGTCCTCTTATCCCCACAGAAAGTGAAAGATCCTTAATGGAGAGGGTTAGGCAAGAACTGAAGCATGAACTTAAGACGGGTTACAAGGAGAAAATTGTAGATATAAGAGAGGAGATTTTGCGAAAGAGAAGAGCTGGTAAGCTCCCTGGTGATACCACTTCTGTCTTAAAAGCATGGTGGCAAACCCATTCAAAATGGCCATATCCTACGGAGGTACGTCCGGATCAGGATGTTTCGCTCTCGCTCGAGGATTGCTTGAAGCTCTTGAAGGGGGAGATGGACGAGCAGCGCCTCGCTGGCCTTTTCCTCGTCACTAAAATTTGTAATGGCGAGGACAACGCTTCGCTTACTAGGATATACGATGCAGTCGGTGTTACGTTTCTTGATCGACTTCTCAAGACAGGAATGGGGAAAGGAACAATTAGTGGCCCTGGAAACGACAACCGTGATGCTTATTTGGAGTTATCAGTGAGGGTTCTAGCTGTTTTCTGCCGCGTTCATGAGATTGCTTCATCCAAGGACATGGTCTCTAAGATTCCGCTAATTCTGGAAAGCCTATCCAACGAATCTTGCTTTGCAGTTCTCGAGGATTGCTTTGAATTTTTATACTTAGTATCAACTGCTTCAGAGGATGCAGTCATGACATTGTACCACAATGGGGGTCTGAAAATGTTAGCATTGCAAATGTCAAAGATGACAGATGGTTCTCATCCAACAAAGCTAGCCATCCAACTTGTTCAAATGATTATAAGAAAGCTGTCTATTGATGTTGTCATTGCTAACTTTCTCTCGGAGCTTTCAATGATTGTTGGTTCAAACTTTAGTACTTTTCGCTGA 1857 48.63 MAYHNHLSQDLPLHRFTEQPQQQPNAPLSENSLRTILPDQLTAHASPDPTSKNHHHHHHPLQTAPNWLNNALLRTQNPHSHFSTDTTTTATNNANTNFLNLHSTASDSPASHSSNQWLSRPILHRNHSDVIDDVTAGDALIGASTGTLSHESAELKNNANSGEALNKGDGVGVEAGGDGSGGEGIGSWQNARYKAEILGHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVTKYSALSHGAQSMVGDDKELDQFMTHYVLLLCSFKDQLQQHVRVHAMEAVMACWDIEQSLQSLTGVSPGEGTGATMSDDDDDQLDSDANLFDASLDGHDTMGFGPLIPTESERSLMERVRQELKHELKTGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQTHSKWPYPTEVRPDQDVSLSLEDCLKLLKGEMDEQRLAGLFLVTKICNGEDNASLTRIYDAVGVTFLDRLLKTGMGKGTISGPGNDNRDAYLELSVRVLAVFCRVHEIASSKDMVSKIPLILESLSNESCFAVLEDCFEFLYLVSTASEDAVMTLYHNGGLKMLALQMSKMTDGSHPTKLAIQLVQMIIRKLSIDVVIANFLSELSMIVGSNFSTFR 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 52435054 52442309 - BLOR01400 Blo01g01400 55840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01400 618 Pfam KNOX1 domain 193 234 IPR005540 GO:0003677|GO:0005634
Blo01g01400 618 SUPERFAMILY ARM repeat 376 570 IPR016024 -
Blo01g01400 618 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 56 411 - -
Blo01g01400 618 SMART ELK_2 359 380 IPR005539 GO:0003677
Blo01g01400 618 SMART KNOX2_2 247 302 IPR005541 GO:0003677|GO:0005634
Blo01g01400 618 MobiDBLite consensus disorder prediction 42 63 - -
Blo01g01400 618 Gene3D - 380 421 - -
Blo01g01400 618 MobiDBLite consensus disorder prediction 12 29 - -
Blo01g01400 618 Pfam Neurochondrin 418 595 IPR008709 -
Blo01g01400 618 Pfam KNOX2 domain 251 301 IPR005541 GO:0003677|GO:0005634
Blo01g01400 618 Pfam ELK domain 359 380 IPR005539 GO:0003677
Blo01g01400 618 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 3 ISOFORM X1 56 411 - -
Blo01g01400 618 SMART KNOX1_2 191 235 IPR005540 GO:0003677|GO:0005634
Blo01g01400 618 ProSiteProfiles ELK domain profile. 359 379 IPR005539 GO:0003677
Blo01g01400 618 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01400 Blo-Chr1:52435054 Blo19g00301 Blo-Chr19:19356768 4.78E-68 dispersed
Blo01g01400 Blo-Chr1:52435054 Blo12g01065 Blo-Chr12:28422696 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01400 - - csv:101217292 641.343