Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01418 ATGTCGGACGAGGAGCATAACTTCGAGTCCAAGGCCGACGCTGGTGCCTCAAAAACTTATCCTCAGCAGGCTGGAACAATCCGCAAGAACGGTTACATAGTTATCAAGGGCCGTCCCTGCAAGGTTGTAGAGGTTTCTACTTCCAAGACAGGGAAACATGGACATGCAAAGTGCCACTTTGTGGCTATTGATATATTTACTTCTAAGAAACTCGAGGATATTGTCCCATCATCCCACAACTGTGATGTTCCTCATGTTACTCGTACTGATTATCAGCTGATTGACATATCTGAAGATGGATTTTTGAGTCTTTTGACTGATTCCGGCAACACAAAAGATGACTTGAGGCTTCCTACTGATGAGAGCCTTCTTAGTCAGGCTGGTAGATATGAAAATCCTGAAGAAAATCCTTTCTTTCCAGATCATTTACCTCCTCCACAGGTGCCTCGTCTCAATTTTTCAGAGGTGTTATACCCCCCAGCTGCTTCAATTAACATAAACAAGCACATTTGGGATTTTTACTTCCAAAAATTGCTGCCATTATTCGTTTCTGCGGGTGATGATGGCAACTACGCATCGACGGCTGCTAGCGATCTTGCTTGTTTACAGGCACTTTCTCGAAGAATTCATTATGGGAAATTTGTCGCCGAGGTAAAATTTAGAGATGCCCCGCATGATTATGAATCTCCTATTATTGCTCAGGACAGAGATACTCTGATGAAGTTGTTAACTTCTACGCCCGTGGAAGAGATGGTGAAGAAACGAGTAGAGAAAAAGGCTGAGGTGTTTGGCCAAGAAGTGACGCTTGACAACAGCAAAGGAGAAGAGAGAAAGTATAAGATTGAACCTTCTGTTGTTTCCCACCTTTATGACAAATGGGTTATTCCTCTCACCAAGGAAGTGGAAGTCGAATACCTTCTTCGCCGACTTGATTGA 936 43.48 MSDEEHNFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTSKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFLSLLTDSGNTKDDLRLPTDESLLSQAGRYENPEENPFFPDHLPPPQVPRLNFSEVLYPPAASININKHIWDFYFQKLLPLFVSAGDDGNYASTAASDLACLQALSRRIHYGKFVAEVKFRDAPHDYESPIIAQDRDTLMKLLTSTPVEEMVKKRVEKKAEVFGQEVTLDNSKGEERKYKIEPSVVSHLYDKWVIPLTKEVEVEYLLRRLD 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 52859890 52864893 + BLOR01418 Blo01g01418 55858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01418 311 ProSiteProfiles Chorismate mutase domain profile. 44 311 IPR008238 GO:0004106|GO:0009073
Blo01g01418 311 TIGRFAM eIF_5A: translation elongation factor IF5A 17 120 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Blo01g01418 311 Gene3D Chorismate mutase, AroQ class superfamily, eukaryotic 99 311 IPR037039 GO:0004106|GO:0009073
Blo01g01418 311 SMART eIF_5a_2 85 136 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Blo01g01418 311 Gene3D - 1 85 IPR014722 -
Blo01g01418 311 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 123 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Blo01g01418 311 SUPERFAMILY Chorismate mutase II 108 311 IPR036263 GO:0046417
Blo01g01418 311 MobiDBLite consensus disorder prediction 1 21 - -
Blo01g01418 311 PANTHER BNAA07G09420D PROTEIN 1 123 - -
Blo01g01418 311 TIGRFAM CM_pl-yst: chorismate mutase 118 311 IPR008238 GO:0004106|GO:0009073
Blo01g01418 311 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 125 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Blo01g01418 311 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Blo01g01418 311 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01418 Blo-Chr1:52859890 Blo11g00789 Blo-Chr11:11920878 8.90E-85 dispersed
Blo01g01418 Blo-Chr1:52859890 Blo12g01052 Blo-Chr12:28322063 2.13E-86 wgd
Blo01g01418 Blo-Chr1:52859890 Blo17g00003 Blo-Chr17:16087 3.40E-76 wgd
Blo01g01418 Blo-Chr1:52859890 Blo18g00009 Blo-Chr18:103981 1.01E-76 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01418 K01850 - pop:7465419 271.166