Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01420 ATGAGGAAACAGAAACGGAAACGATATGCACATAGATATGGAAACGGAAATGGAAACGAAAACGGAAACAAAAACGGAAACGGAAACGAGTCTTCTGAAACAAAAACGGATACAGATATGGATACGGAAACGGAAACGGATAAGTTTCGGCTTTGCGTAGCTGATCCTTTGAGTGATCGATCGTCGCCAGAAATGGAGCTTACCCCGCAGCAGCTGAGTCTCTACGATGGTTCAGATCCATCGAAGCCGATTTACGTGGCTGTGAAGGGCCGCATCTTCGACGTTACGACTGGAAAATCCTTCTACGGCCCTGGAGGTTCATACACCATGTTCGCAGGCAAGGACGCTACCCGAGCTCTTGCCAAGATGTCCAAAAACGAAGAGGACATTACCTCCTCTGTCGACGGTCTCTCTGAGAAGGAGATCGGAATTCTCGACGACTGGGAAAAGAAATTCGAAGCCAAATACCACGTTGTCGGTCGTGTCGTTTCTAACCCAATACCCTGCAAGCATCTTGCAGATTATAAGCTTAGGTATGGGTTAAACGCCTATAAATCTATCCAAAAATGCCTCAAGACTACACCAAATGGGAGAACTCGAATTCAAAACCTAGATACAGAGATACCCAAATGCTGTTCTTGTAATAGGTACGAAGGTAGACTTTATTTTTGCTTGATTTGCTCTTCAATCTCTTGTTCGAACCACACCCTTTTGCATATCGAATCGGAAGATAGCCACGCTATCGCCGTGGACGTCGATAGGGCCGAGCTCTACTGCTGCGTGTGCTCTGATCAGGTCTATGATCCGGATTTCGATAAGTGTGTGATGACGAAACACATCAATGGGTTCCCCAAAGATTTGGAAGAAGCCGAAAGTATAGGAGAAAGGTTGAGTAAGAGGAGGAAATTGAGTTCGATGTTTGGAGAAGAGTCTCTCGATTCGAAGAAATTGAAATCTTTGAATTCTCTGAGAGATCTGAGACAGAAATCGTGTTATCCATTAGCTTTAAGGGGTTTGAATAATTTGGGCAATACTTGTTTCATGAATTCCATTTTGCAAGTACTGATTCATTCGCCCCCTTTTAGAAATTATTTCTTGACTGATCAGCACAATCGACAAGCCTGCCAGAAAAGATCAGCCGACCACCTTTGTTTGCCGTGTGACATTGCTGCCATTTTCTCAGCTGCATTTTCCGCGGATCGGACCCCTTATAGTCCTGCTCCATTTCTTTACAGTTGGTGGCAGCACTCAACCAATCTAGCCAGTTACGAGCAGCAGGACGCCCACGAATTCTTCATTTCCCTACTAGACAGCATCCACGAGAAAGAGGCGAAAGCAAGAAATCACATTCGAGTAGGTAATGGAGATTGCAAATGTATTGCCCACAAGGTATTCTCTGGACAATTGAGATCAGATGTCACTTGTATGACTTGTGGATTTACTTCAACAACATTAGACCCGTGTCTCGATATTTCGCTCGACTTGAACAAGAGAAATTACTCTTCGCGAGATATAGCTGATAAATCTGTCAAACCCGTAGAAGCAAACAGTATATCTACGCTTTACGGATGTTTGGATTTGTTCACCAGGCTGGAGAAATTGGGATCGGATCAGAAACTTTTTTGCCAAAACTGTCTAGAGCGACAGAATTCGTTGAAGCAAATGTCAATAAGAAGGCTTCCATTAGTCTTGTGCTTGCACATGAAGCGCTTCGAGCATTCGACTGTCAAGAACACATCAAAAAAGATCGATCGCTATTTGCACTTCCCGTTTTCCTTGGACATGATGCCATATTTGTCGTCTACGATTGTGAGGAACAGATTTGGAAACAGGATCTTCGCTTTTGAGGGTGATGAATCTGATGTTTCAACCGAGTTTGAGATTTTTGCCGTGATTGCTCATTTTGGGACCCTTGAATCTGGTCATTACGTGACTTATTTACGTTTAAGGGACCAATGGTACAAATGCGACGACGCTTGGATCACGAAGGTGGATGAAGGGGCGGTGAGAAATTCGCAATGTTATATGATGTTTTATCTGCAGAAAATGCTCTGCTACAAATTGAACGATGATTTTGGTTGCCTGCCGATTACGCCCTGCAGGGACTCCCCATACCATTCGGTTGCTGGCTGCTGCTGA 2139 44.27 MRKQKRKRYAHRYGNGNGNENGNKNGNGNESSETKTDTDMDTETETDKFRLCVADPLSDRSSPEMELTPQQLSLYDGSDPSKPIYVAVKGRIFDVTTGKSFYGPGGSYTMFAGKDATRALAKMSKNEEDITSSVDGLSEKEIGILDDWEKKFEAKYHVVGRVVSNPIPCKHLADYKLRYGLNAYKSIQKCLKTTPNGRTRIQNLDTEIPKCCSCNRYEGRLYFCLICSSISCSNHTLLHIESEDSHAIAVDVDRAELYCCVCSDQVYDPDFDKCVMTKHINGFPKDLEEAESIGERLSKRRKLSSMFGEESLDSKKLKSLNSLRDLRQKSCYPLALRGLNNLGNTCFMNSILQVLIHSPPFRNYFLTDQHNRQACQKRSADHLCLPCDIAAIFSAAFSADRTPYSPAPFLYSWWQHSTNLASYEQQDAHEFFISLLDSIHEKEAKARNHIRVGNGDCKCIAHKVFSGQLRSDVTCMTCGFTSTTLDPCLDISLDLNKRNYSSRDIADKSVKPVEANSISTLYGCLDLFTRLEKLGSDQKLFCQNCLERQNSLKQMSIRRLPLVLCLHMKRFEHSTVKNTSKKIDRYLHFPFSLDMMPYLSSTIVRNRFGNRIFAFEGDESDVSTEFEIFAVIAHFGTLESGHYVTYLRLRDQWYKCDDAWITKVDEGAVRNSQCYMMFYLQKMLCYKLNDDFGCLPITPCRDSPYHSVAGCC 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 52949320 52956542 + BLOR01420 Blo01g01420 55860

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01420 712 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 337 682 IPR028889 -
Blo01g01420 712 MobiDBLite consensus disorder prediction 34 49 - -
Blo01g01420 712 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 65 163 IPR036400 -
Blo01g01420 712 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 161 703 - -
Blo01g01420 712 SUPERFAMILY Cysteine proteinases 336 679 IPR038765 -
Blo01g01420 712 Pfam Ubiquitin carboxyl-terminal hydrolase 338 679 IPR001394 GO:0004843|GO:0016579
Blo01g01420 712 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 338 353 IPR018200 GO:0004843|GO:0006511
Blo01g01420 712 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 283 IPR013083 -
Blo01g01420 712 SMART Cyt_b5_2 67 163 IPR001199 -
Blo01g01420 712 Pfam Zn-finger in ubiquitin-hydrolases and other protein 211 270 IPR001607 GO:0008270
Blo01g01420 712 SMART Zf_UBP_1 210 257 IPR001607 GO:0008270
Blo01g01420 712 PANTHER UBIQUITIN C-TERMINAL HYDROLASE 22 161 703 - -
Blo01g01420 712 ProSiteProfiles Zinc finger UBP-type profile. 167 287 IPR001607 GO:0008270
Blo01g01420 712 Pfam Cytochrome b5-like Heme/Steroid binding domain 68 162 IPR001199 -
Blo01g01420 712 MobiDBLite consensus disorder prediction 16 33 - -
Blo01g01420 712 Gene3D - 64 163 IPR036400 -
Blo01g01420 712 SUPERFAMILY RING/U-box 167 273 - -
Blo01g01420 712 MobiDBLite consensus disorder prediction 1 49 - -
Blo01g01420 712 Gene3D Cysteine proteinases 334 684 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01420 K11366 USP22_27_51, UBP8; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] - jre:109005202 813.913
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01420 Blo-Chr1:52949320 Blo14g00806 Blo-Chr14:26411755 2.75E-179 dispersed
Blo03g00617 Blo-Chr3:25045441 Blo01g01420 Blo-Chr1:52949320 3.55E-12 dispersed
Blo15g00764 Blo-Chr15:26231011 Blo01g01420 Blo-Chr1:52949320 2.83E-11 dispersed
Blo16g00788 Blo-Chr16:33108228 Blo01g01420 Blo-Chr1:52949320 1.82E-10 dispersed
Blo19g00084 Blo-Chr19:2038174 Blo01g01420 Blo-Chr1:52949320 1.44E-10 dispersed
Blo01g01420 Blo-Chr1:52949320 Blo07g00971 Blo-Chr7:29178916 3.07E-33 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g597 Blo01g01420 . Bda01g00659 . . Bpe02g00532 . . . . . . Car09g00347 . . . . . . . . . . . Cla05g01666 Cam05g1780 Cec05g1786 Cco05g1846 Clacu05g1769 Cmu05g1653 Cre05g1782 . Cone7ag1656 . . Lsi04g01349 Csa03g04488 Chy04g00212 . . . . . . . . . Sed13g1952 . Cmo09g00400 . . . . . . Bhi09g03035 Tan01g3536 Cmetu07g1151 . Hepe01g1951 Mch11g0488 . . . . . . . . . . . Cme07g00137
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012836 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 0 1 1 1 0 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01420 Blo_Chr01 FPKM 0.0 1.320185 0.0 0.0 0.0 0.0 1.681825 0.0 0.0 0.0