Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01429 ATGGTTTGCGAGTTGGAGAGGAACATCATGGAAGATATGGACATTGAGGACCTTCCCTCGATGTGGCCTGAAGATGTAGTATCTAATGTTGGTAAGCAATTTAATCTGGAAAAGCCAAGAGGAGATCAAGATATGCTGGAAGAAGTTACCATAATAGAGGAGCCAACAATAGTGGATTTCAAACGCCTTCTGGAGTTGACGAACTACACTGAGAAAGGGTCTTCGCAATTGCAATATCTTGCAAAACAATGGGAATATAAACAGGCGAATGCTGTTCGTCTTCTTAAAGAAGAACTTGACATTATGAGCAAACAAAGGCAGGAATTCGAGCTCAAGGAATTGGAGATAGTAGAGGAGCATCTCTTTGAGGAAGAAAGATATGGTGATTATAAGCGTCCAATTTCTATCTTGGAAGAAGTTTATGACTTATGGCAAGATGCTCCTCAAAAAAAAAATGATTTTGTTCTTCAAAATAAGAGAGTTGAAATAGAGCCAGAGTATGATACCATCACTTTTTGGAAGCAGAAGGCTGTGAAGTTGGAGAAATCATTAGAAGCTAGTTTACAGCGAGAGCAGATTTTAATAGAGACGCTCCAGGAAAGAATAAAAAATATCGAGAAGCAGACATCACCAGTTGAGGAGTTATCCCAGATTTTGAAAAGAGCAGACAATTTTTTGCATTTCGTTCTTCAGAATGCACCAGTTGTTATTGGTCATCAGGATAAAGAATTGCGGTATCGTTTTATCTATAATCATTTTCCAAGTTTGCAAGAGGAGGATATTATTGGAAAAACAGATGTTGAAATTTTTCATGGAGCCGGTGTTAAGGAATCTCAAGATTTCAAAAGAGAAGTTCTAGAAAAAGGAATACCTGCAAAGAGGGAAATTACTTTTGACACTCCATTATTTGGGTTGAAGACATTCTTGATATTTGTGGAACCTGTCTTCAGTAAGGCCAAGGAGACAATTGGGATAAACTATATGGGAATGGATGTAACTGATCAGGTCAGGAAACGAGAAAAGATGGCAAAACTCAGAGAGGAGATAGCAGTGCAAAAGGCCAAGGAAACAGAACTAAACAAAACCATTCATATTACAGAGGAGACAATGAGGGCAAAGCAAATGCTAGCAACGATGTCGCATGAGATAAGATCTCCTCTATCTGGGGTTGTTAGTATGGCTGAGATTCTTGCCACTACAAAACTTGATCGGGAGCAGCGACAGCTTTTGGATGTTATGCTGTCTTCAGGGGATTTGGTGATTCAACTTATAAATGACATCTTGGATCTTTCAAAGGTTGAGTCAGGAGTTATGAAATTGGAAGCTACAAAATTCAGGCCTAGAGAGGTTGTGAAGCATGTCCTCCAGACTGCAGCTGCATCACTGCAGAAATGTTTACTCTTGGAAGGCCATGTAGCTGATGAAGTTCCTGTAGAGGTCATTGGAGATGTTTTGAGGATTAGGCAAATTCTTACGAACTTGATAAGCAATGCAATCAAATTTACTCATCAAGGAAAGGTTGGTATTAAGATTTATGTGGTACCAGATCAAGTTTCTGGGAAAGGAAAAGAATGTCATCCGAAAAAAAGGGAGGAACATCACCAGGCACTCGAAACAACTGTGTGGATTCGCTGCGATGTTTACGACACAGGAATTGGAATACCAGAAAATGCATTACCTACACTCTTTAAAAAGTACATGCAAGTTAGTGCTGATCATGCCAGAAAGTACGGAGGGACGGGGCTGGGATTAGCAATATGCAAACAACTGGTTGAGCTGATGGGTGGTCTTTTGACGGTGTTTAGCCAAGAGCATCGTGGATCTACTTTTACATTTGTGTTACCATACAAGCTTTCGACCGCTGCCGACGCTACTGATGATTCTGATGAGATCGAAGATGTGACAAATTACAATGTGGCAAATAGTGATTCATCTGAAGGGTTTTTCCAATTTCAACCTGGCAGTTTTGGTTCGCTAACCTCTTCTAACGGATGTAGCAGAACTCAAAAGTTGTCGCATAACAACGGGTATGCAACTTCAAAAGAAAATGGATTACAATGGAGTTCTAATTCGTTTCTCTCCAACCCAAGATCAAAAGCGATGTCTTTTCTTGAGGATGCCTGTTCAGTAGCTGACTCTACAACATTAGAGGAATCAAAAACTACCCAAAATCATAATGAGAATTCAGTTTGTGGAGTGAAGCACTCTCAAGATAAGACAAATGGTCAATCCCTGAATGATTGTAATGATTCACCTCATAGCATGGGAAAAGAAAGAGAAGAGTACATATCAAAAGGGACATTTGAACCCCAAGTAAATTCCAAGTGGAAGGAGAAATCTGATTCCAGTTTTCATTGCGTGAACAAGGTCGATTCAGAAGCATCTCAATCAGCATTGAAACCTAGAATCCTTCTTGTGGAGGACAACAAGACCAATATAATGGTAACACAATCCATGATGAAGAAGTTGGGACATAGCATTGATGTTGTCACCAATGGAGCTGATGCAGTGCGAGCAGTTCAGTGTTGTCACTACGATCTTGTTCTCATGGATGTGTGCATGCCGATAATGGATGGGCTCCAAGCTACCAGATTAATTCGTTCTTTCGAAGAAACAGGTAACTGGGATGCCGCAGAAAAGGCTGGAATTGAACCCATGCATGGCCGGAGTGTATCCAGCGGCAAGCGTATTCCCATCGTGGCTATGACAGCGAATGCGTTGGCTGAAAGTGCAGGAGAGTGCTTTGCAAATGGTATGGACTCTTTTGTTTCAAAGCCCGTCACTTTCCCACACTTAAAACAGTGCCTTGAACAATACTTAACGTGA 2826 40.76 MVCELERNIMEDMDIEDLPSMWPEDVVSNVGKQFNLEKPRGDQDMLEEVTIIEEPTIVDFKRLLELTNYTEKGSSQLQYLAKQWEYKQANAVRLLKEELDIMSKQRQEFELKELEIVEEHLFEEERYGDYKRPISILEEVYDLWQDAPQKKNDFVLQNKRVEIEPEYDTITFWKQKAVKLEKSLEASLQREQILIETLQERIKNIEKQTSPVEELSQILKRADNFLHFVLQNAPVVIGHQDKELRYRFIYNHFPSLQEEDIIGKTDVEIFHGAGVKESQDFKREVLEKGIPAKREITFDTPLFGLKTFLIFVEPVFSKAKETIGINYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILATTKLDREQRQLLDVMLSSGDLVIQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLQKCLLLEGHVADEVPVEVIGDVLRIRQILTNLISNAIKFTHQGKVGIKIYVVPDQVSGKGKECHPKKREEHHQALETTVWIRCDVYDTGIGIPENALPTLFKKYMQVSADHARKYGGTGLGLAICKQLVELMGGLLTVFSQEHRGSTFTFVLPYKLSTAADATDDSDEIEDVTNYNVANSDSSEGFFQFQPGSFGSLTSSNGCSRTQKLSHNNGYATSKENGLQWSSNSFLSNPRSKAMSFLEDACSVADSTTLEESKTTQNHNENSVCGVKHSQDKTNGQSLNDCNDSPHSMGKEREEYISKGTFEPQVNSKWKEKSDSSFHCVNKVDSEASQSALKPRILLVEDNKTNIMVTQSMMKKLGHSIDVVTNGADAVRAVQCCHYDLVLMDVCMPIMDGLQATRLIRSFEETGNWDAAEKAGIEPMHGRSVSSGKRIPIVAMTANALAESAGECFANGMDSFVSKPVTFPHLKQCLEQYLT 941
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 53123294 53129159 - BLOR01429 Blo01g01429 55869

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01429 941 Gene3D - 437 622 IPR036890 -
Blo01g01429 941 Gene3D - 358 436 - -
Blo01g01429 941 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 482 616 IPR003594 -
Blo01g01429 941 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 533 940 - -
Blo01g01429 941 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 6 523 - -
Blo01g01429 941 ProSiteProfiles Response regulatory domain profile. 802 940 IPR001789 GO:0000160
Blo01g01429 941 Pfam Response regulator receiver domain 803 870 IPR001789 GO:0000160
Blo01g01429 941 SUPERFAMILY PYP-like sensor domain (PAS domain) 216 333 IPR035965 -
Blo01g01429 941 SUPERFAMILY CheY-like 801 940 IPR011006 -
Blo01g01429 941 Gene3D - 795 941 - -
Blo01g01429 941 Coils Coil 181 208 - -
Blo01g01429 941 ProSiteProfiles Histidine kinase domain profile. 378 618 IPR005467 -
Blo01g01429 941 CDD HisKA 370 432 IPR003661 GO:0000155|GO:0007165
Blo01g01429 941 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 370 436 IPR036097 GO:0000155|GO:0007165
Blo01g01429 941 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 533 940 - -
Blo01g01429 941 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 6 523 - -
Blo01g01429 941 SMART HKATPase_4 482 618 IPR003594 -
Blo01g01429 941 Coils Coil 92 112 - -
Blo01g01429 941 SMART REC_2 801 936 IPR001789 GO:0000160
Blo01g01429 941 Coils Coil 342 362 - -
Blo01g01429 941 CDD HATPase_EvgS-ArcB-TorS-like 487 615 - -
Blo01g01429 941 MobiDBLite consensus disorder prediction 717 751 - -
Blo01g01429 941 MobiDBLite consensus disorder prediction 717 756 - -
Blo01g01429 941 Gene3D PAS domain 213 348 - -
Blo01g01429 941 SMART HisKA_10 371 436 IPR003661 GO:0000155|GO:0007165
Blo01g01429 941 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 425 617 IPR036890 -
Blo01g01429 941 Pfam His Kinase A (phospho-acceptor) domain 373 436 IPR003661 GO:0000155|GO:0007165
Blo01g01429 941 PRINTS Bacterial sensor protein C-terminal signature 578 596 IPR004358 GO:0016310|GO:0016772
Blo01g01429 941 PRINTS Bacterial sensor protein C-terminal signature 602 615 IPR004358 GO:0016310|GO:0016772
Blo01g01429 941 PRINTS Bacterial sensor protein C-terminal signature 543 557 IPR004358 GO:0016310|GO:0016772
Blo01g01429 941 CDD REC_hyHK_CKI1_RcsC-like 803 936 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01429 - - - qsu:112030697 1292.72
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01429 Blo-Chr1:53123294 Blo02g00136 Blo-Chr2:1157458 1.62E-11 dispersed
Blo01g01429 Blo-Chr1:53123294 Blo12g00277 Blo-Chr12:16640388 4.41E-51 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g656 Blo01g01429 . Bda01g00649 . . Bpe02g00521 . Bma01g02184 . . Cma01g01683 . Car09g00334 . . . Cpe06g00274 . . . . . . . Cla05g01652 Cam05g1764 Cec05g1770 Cco05g1829 Clacu05g1754 Cmu05g1639 Cre05g1767 Cone4ag1716 Cone7ag1634 . . Lsi04g01364 . . . . . . . . . . . Sed05g1812 Cmo01g01734 Cmo09g00388 Cma09g00387 . Car01g01298 . . Cpe02g00308 Bhi09g03051 Tan01g3520 Cmetu07g0647 . . . . . . . . . . . . . . Cme07g00153
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo04g00878 BCT 9 1158 Histidine Kinase Gene Family AT2G17820 63.3 0.0e+00 1365.5
Blo16g00087 BCT 35 1178 Histidine Kinase Gene Family AT2G17820 63.7 0.0e+00 1358.2
Blo11g00965 . 17 1036 Histidine Kinase Gene Family AT2G01830 69.6 0.0e+00 1333.2
Blo01g00163 . 159 1111 Histidine Kinase Gene Family AT2G01830 52.4 7.3e-271 930.6
Blo12g00277 . 8 927 Histidine Kinase Gene Family AT2G01830 53.8 3.7e-267 918.3
Blo02g00136 . 308 1182 Histidine Kinase Gene Family AT2G01830 50.4 1.5e-236 816.6
Blo01g01429 . 1 940 Histidine Kinase Gene Family AT5G10720 59.1 1.0e-292 1003.0
Blo18g00692 . 112 1231 Histidine Kinase Gene Family AT1G09570 75.9 0.0e+00 1735.7
Blo07g00144 CCT 699 1790 Histidine Kinase Gene Family AT1G09570 53.7 0.0e+00 1175.6
Blo01g00030 CCT 36 1148 Histidine Kinase Gene Family AT1G09570 52.6 0.0e+00 1164.8
Blo02g00140 BCT 494 1519 Histidine Kinase Gene Family AT1G09570 53.7 0.0e+00 1130.5
Blo01g00879 . 36 1109 Histidine Kinase Gene Family AT1G09570 50.3 2.9e-310 1061.6
Blo15g00443 . 12 682 Histidine Kinase Gene Family AT1G09570 61.9 3.7e-249 858.6
Blo01g00030 CCT 12 1084 Histidine Kinase Gene Family AT2G18790 75.4 0.0e+00 1607.0
Blo07g00144 CCT 700 1741 Histidine Kinase Gene Family AT2G18790 75.7 0.0e+00 1601.3
Blo01g00879 . 15 1047 Histidine Kinase Gene Family AT2G18790 62.1 0.0e+00 1286.6
Blo02g00140 BCT 494 1510 Histidine Kinase Gene Family AT2G18790 53.2 0.0e+00 1083.2
Blo18g00692 . 132 1166 Histidine Kinase Gene Family AT2G18790 50.8 9.7e-306 1046.6
Blo15g00443 . 23 683 Histidine Kinase Gene Family AT2G18790 61.5 6.9e-235 811.2
Blo02g00140 BCT 499 1520 Histidine Kinase Gene Family AT5G35840 62.6 0.0e+00 1308.1
Blo07g00144 CCT 691 1792 Histidine Kinase Gene Family AT5G35840 51.7 0.0e+00 1133.2
Blo18g00692 . 120 1226 Histidine Kinase Gene Family AT5G35840 50.2 0.0e+00 1105.5
Blo01g00030 CCT 39 1144 Histidine Kinase Gene Family AT5G35840 50.9 0.0e+00 1102.4
Blo15g00443 . 10 682 Histidine Kinase Gene Family AT5G35840 68.7 1.1e-274 943.3
Blo15g00444 BCT 1 367 Histidine Kinase Gene Family AT5G35840 52.7 3.2e-107 387.1
Blo07g00144 CCT 673 1792 Histidine Kinase Gene Family AT4G16250 72.9 0.0e+00 1638.2
Blo01g00030 CCT 8 1144 Histidine Kinase Gene Family AT4G16250 72.0 0.0e+00 1637.5
Blo01g00879 . 35 1109 Histidine Kinase Gene Family AT4G16250 60.1 0.0e+00 1307.7
Blo02g00140 BCT 482 1520 Histidine Kinase Gene Family AT4G16250 52.4 1.1e-312 1069.7
Blo15g00443 . 24 683 Histidine Kinase Gene Family AT4G16250 59.4 2.4e-227 786.2
Blo01g00879 . 14 1110 Histidine Kinase Gene Family AT4G18130 64.4 0.0e+00 1400.6
Blo07g00144 CCT 708 1786 Histidine Kinase Gene Family AT4G18130 58.5 0.0e+00 1249.2
Blo01g00030 CCT 39 1145 Histidine Kinase Gene Family AT4G18130 57.1 0.0e+00 1237.6
Blo15g00443 . 28 683 Histidine Kinase Gene Family AT4G18130 55.3 7.8e-207 718.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005508 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11917 PF02518 HATPase_c 2.40E-29 CL0025 Blo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01429 Blo_Chr01 FPKM 16.896654 15.774858 17.334419 16.75036 15.071232 18.963055 15.930079 21.073462 18.157261 20.165216