Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01429 ATGGTTTGCGAGTTGGAGAGGAACATCATGGAAGATATGGACATTGAGGACCTTCCCTCGATGTGGCCTGAAGATGTAGTATCTAATGTTGGTAAGCAATTTAATCTGGAAAAGCCAAGAGGAGATCAAGATATGCTGGAAGAAGTTACCATAATAGAGGAGCCAACAATAGTGGATTTCAAACGCCTTCTGGAGTTGACGAACTACACTGAGAAAGGGTCTTCGCAATTGCAATATCTTGCAAAACAATGGGAATATAAACAGGCGAATGCTGTTCGTCTTCTTAAAGAAGAACTTGACATTATGAGCAAACAAAGGCAGGAATTCGAGCTCAAGGAATTGGAGATAGTAGAGGAGCATCTCTTTGAGGAAGAAAGATATGGTGATTATAAGCGTCCAATTTCTATCTTGGAAGAAGTTTATGACTTATGGCAAGATGCTCCTCAAAAAAAAAATGATTTTGTTCTTCAAAATAAGAGAGTTGAAATAGAGCCAGAGTATGATACCATCACTTTTTGGAAGCAGAAGGCTGTGAAGTTGGAGAAATCATTAGAAGCTAGTTTACAGCGAGAGCAGATTTTAATAGAGACGCTCCAGGAAAGAATAAAAAATATCGAGAAGCAGACATCACCAGTTGAGGAGTTATCCCAGATTTTGAAAAGAGCAGACAATTTTTTGCATTTCGTTCTTCAGAATGCACCAGTTGTTATTGGTCATCAGGATAAAGAATTGCGGTATCGTTTTATCTATAATCATTTTCCAAGTTTGCAAGAGGAGGATATTATTGGAAAAACAGATGTTGAAATTTTTCATGGAGCCGGTGTTAAGGAATCTCAAGATTTCAAAAGAGAAGTTCTAGAAAAAGGAATACCTGCAAAGAGGGAAATTACTTTTGACACTCCATTATTTGGGTTGAAGACATTCTTGATATTTGTGGAACCTGTCTTCAGTAAGGCCAAGGAGACAATTGGGATAAACTATATGGGAATGGATGTAACTGATCAGGTCAGGAAACGAGAAAAGATGGCAAAACTCAGAGAGGAGATAGCAGTGCAAAAGGCCAAGGAAACAGAACTAAACAAAACCATTCATATTACAGAGGAGACAATGAGGGCAAAGCAAATGCTAGCAACGATGTCGCATGAGATAAGATCTCCTCTATCTGGGGTTGTTAGTATGGCTGAGATTCTTGCCACTACAAAACTTGATCGGGAGCAGCGACAGCTTTTGGATGTTATGCTGTCTTCAGGGGATTTGGTGATTCAACTTATAAATGACATCTTGGATCTTTCAAAGGTTGAGTCAGGAGTTATGAAATTGGAAGCTACAAAATTCAGGCCTAGAGAGGTTGTGAAGCATGTCCTCCAGACTGCAGCTGCATCACTGCAGAAATGTTTACTCTTGGAAGGCCATGTAGCTGATGAAGTTCCTGTAGAGGTCATTGGAGATGTTTTGAGGATTAGGCAAATTCTTACGAACTTGATAAGCAATGCAATCAAATTTACTCATCAAGGAAAGGTTGGTATTAAGATTTATGTGGTACCAGATCAAGTTTCTGGGAAAGGAAAAGAATGTCATCCGAAAAAAAGGGAGGAACATCACCAGGCACTCGAAACAACTGTGTGGATTCGCTGCGATGTTTACGACACAGGAATTGGAATACCAGAAAATGCATTACCTACACTCTTTAAAAAGTACATGCAAGTTAGTGCTGATCATGCCAGAAAGTACGGAGGGACGGGGCTGGGATTAGCAATATGCAAACAACTGGTTGAGCTGATGGGTGGTCTTTTGACGGTGTTTAGCCAAGAGCATCGTGGATCTACTTTTACATTTGTGTTACCATACAAGCTTTCGACCGCTGCCGACGCTACTGATGATTCTGATGAGATCGAAGATGTGACAAATTACAATGTGGCAAATAGTGATTCATCTGAAGGGTTTTTCCAATTTCAACCTGGCAGTTTTGGTTCGCTAACCTCTTCTAACGGATGTAGCAGAACTCAAAAGTTGTCGCATAACAACGGGTATGCAACTTCAAAAGAAAATGGATTACAATGGAGTTCTAATTCGTTTCTCTCCAACCCAAGATCAAAAGCGATGTCTTTTCTTGAGGATGCCTGTTCAGTAGCTGACTCTACAACATTAGAGGAATCAAAAACTACCCAAAATCATAATGAGAATTCAGTTTGTGGAGTGAAGCACTCTCAAGATAAGACAAATGGTCAATCCCTGAATGATTGTAATGATTCACCTCATAGCATGGGAAAAGAAAGAGAAGAGTACATATCAAAAGGGACATTTGAACCCCAAGTAAATTCCAAGTGGAAGGAGAAATCTGATTCCAGTTTTCATTGCGTGAACAAGGTCGATTCAGAAGCATCTCAATCAGCATTGAAACCTAGAATCCTTCTTGTGGAGGACAACAAGACCAATATAATGGTAACACAATCCATGATGAAGAAGTTGGGACATAGCATTGATGTTGTCACCAATGGAGCTGATGCAGTGCGAGCAGTTCAGTGTTGTCACTACGATCTTGTTCTCATGGATGTGTGCATGCCGATAATGGATGGGCTCCAAGCTACCAGATTAATTCGTTCTTTCGAAGAAACAGGTAACTGGGATGCCGCAGAAAAGGCTGGAATTGAACCCATGCATGGCCGGAGTGTATCCAGCGGCAAGCGTATTCCCATCGTGGCTATGACAGCGAATGCGTTGGCTGAAAGTGCAGGAGAGTGCTTTGCAAATGGTATGGACTCTTTTGTTTCAAAGCCCGTCACTTTCCCACACTTAAAACAGTGCCTTGAACAATACTTAACGTGA 2826 40.76 MVCELERNIMEDMDIEDLPSMWPEDVVSNVGKQFNLEKPRGDQDMLEEVTIIEEPTIVDFKRLLELTNYTEKGSSQLQYLAKQWEYKQANAVRLLKEELDIMSKQRQEFELKELEIVEEHLFEEERYGDYKRPISILEEVYDLWQDAPQKKNDFVLQNKRVEIEPEYDTITFWKQKAVKLEKSLEASLQREQILIETLQERIKNIEKQTSPVEELSQILKRADNFLHFVLQNAPVVIGHQDKELRYRFIYNHFPSLQEEDIIGKTDVEIFHGAGVKESQDFKREVLEKGIPAKREITFDTPLFGLKTFLIFVEPVFSKAKETIGINYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILATTKLDREQRQLLDVMLSSGDLVIQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLQKCLLLEGHVADEVPVEVIGDVLRIRQILTNLISNAIKFTHQGKVGIKIYVVPDQVSGKGKECHPKKREEHHQALETTVWIRCDVYDTGIGIPENALPTLFKKYMQVSADHARKYGGTGLGLAICKQLVELMGGLLTVFSQEHRGSTFTFVLPYKLSTAADATDDSDEIEDVTNYNVANSDSSEGFFQFQPGSFGSLTSSNGCSRTQKLSHNNGYATSKENGLQWSSNSFLSNPRSKAMSFLEDACSVADSTTLEESKTTQNHNENSVCGVKHSQDKTNGQSLNDCNDSPHSMGKEREEYISKGTFEPQVNSKWKEKSDSSFHCVNKVDSEASQSALKPRILLVEDNKTNIMVTQSMMKKLGHSIDVVTNGADAVRAVQCCHYDLVLMDVCMPIMDGLQATRLIRSFEETGNWDAAEKAGIEPMHGRSVSSGKRIPIVAMTANALAESAGECFANGMDSFVSKPVTFPHLKQCLEQYLT 941
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 53123294 53129159 - BLOR01429 Blo01g01429 55869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01429 941 Gene3D - 437 622 IPR036890 -
Blo01g01429 941 Gene3D - 358 436 - -
Blo01g01429 941 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 482 616 IPR003594 -
Blo01g01429 941 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 533 940 - -
Blo01g01429 941 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 6 523 - -
Blo01g01429 941 ProSiteProfiles Response regulatory domain profile. 802 940 IPR001789 GO:0000160
Blo01g01429 941 Pfam Response regulator receiver domain 803 870 IPR001789 GO:0000160
Blo01g01429 941 SUPERFAMILY PYP-like sensor domain (PAS domain) 216 333 IPR035965 -
Blo01g01429 941 SUPERFAMILY CheY-like 801 940 IPR011006 -
Blo01g01429 941 Gene3D - 795 941 - -
Blo01g01429 941 Coils Coil 181 208 - -
Blo01g01429 941 ProSiteProfiles Histidine kinase domain profile. 378 618 IPR005467 -
Blo01g01429 941 CDD HisKA 370 432 IPR003661 GO:0000155|GO:0007165
Blo01g01429 941 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 370 436 IPR036097 GO:0000155|GO:0007165
Blo01g01429 941 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 533 940 - -
Blo01g01429 941 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 6 523 - -
Blo01g01429 941 SMART HKATPase_4 482 618 IPR003594 -
Blo01g01429 941 Coils Coil 92 112 - -
Blo01g01429 941 SMART REC_2 801 936 IPR001789 GO:0000160
Blo01g01429 941 Coils Coil 342 362 - -
Blo01g01429 941 CDD HATPase_EvgS-ArcB-TorS-like 487 615 - -
Blo01g01429 941 MobiDBLite consensus disorder prediction 717 751 - -
Blo01g01429 941 MobiDBLite consensus disorder prediction 717 756 - -
Blo01g01429 941 Gene3D PAS domain 213 348 - -
Blo01g01429 941 SMART HisKA_10 371 436 IPR003661 GO:0000155|GO:0007165
Blo01g01429 941 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 425 617 IPR036890 -
Blo01g01429 941 Pfam His Kinase A (phospho-acceptor) domain 373 436 IPR003661 GO:0000155|GO:0007165
Blo01g01429 941 PRINTS Bacterial sensor protein C-terminal signature 578 596 IPR004358 GO:0016310|GO:0016772
Blo01g01429 941 PRINTS Bacterial sensor protein C-terminal signature 602 615 IPR004358 GO:0016310|GO:0016772
Blo01g01429 941 PRINTS Bacterial sensor protein C-terminal signature 543 557 IPR004358 GO:0016310|GO:0016772
Blo01g01429 941 CDD REC_hyHK_CKI1_RcsC-like 803 936 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01429 Blo-Chr1:53123294 Blo02g00136 Blo-Chr2:1157458 1.62E-11 dispersed
Blo01g01429 Blo-Chr1:53123294 Blo12g00277 Blo-Chr12:16640388 4.41E-51 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11917 PF02518 HATPase_c 2.40E-29 CL0025 Blo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01429 - - qsu:112030697 1292.72