Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01439 ATGGGTTTACTCTGCAGCAAAAGCCGCAACTACAATGGAGCAGATGCCGAAGAGAACGCGCAGGCTGCAGATATAGAAAGGAGGATTGAACGGGAAACAAAGGCTGAAAAACATATTCAGAACCTTCTTCTGCTTGGAGCTGGCGAGTCTGGGAAATCCACAATTTTTAAGCAGGCAAGCCTTTTGCTCATTCAACTGATAAATGTGGCATTATTAATGCAGATAAAACTTTTGTTTCAAACTGGCTTTGATGAGGCAGAATTAAAAAGTTATATCTCAGTCATCCATGCCAATGTCTATCAGACTATAAAAATATTATATGATGGGTCGAAGGAGCTCTCTCAAGATGACACTGATTCCTTGAAGTACGTGGTATCCAGTGAAAATAAGGAAGTTGGGGAGAGACTATCTAAAATTGGAGGCAGATTGGATTACCCCCGTCTCACAAAGGAGCTTGCACATGACGTGGAAACTTTGTGGAAGGATGCCGCTATACAGGAAACATGTGCTCGTGGTAATGAGCTTCAGGTACCAGATTGTGCTCAATATTTCATGGGAAATTTGGAGCGATTATCTGATGTAAATTATGTTCCAACTAAGGAGGATGTTCTCCATGCTAGAGTTCGTACAACAGGGGTGGTGGAGATTCAGTTCAGCCCTGTGGGAAAAAATAAGAAAAGTGGGGAAGTATACCGGCTCTTTGATGTTGGAGGTCAGAGAAATGAGAGGAGAAAGTGGATCCATCTATTTGAAGGTGTTACAGCTGTAATCTTTTGTGCTGCTATTAGTGAATATGATCAAACTCTCTTTGAAGATGAAAGCAAGAATGGAATGATGGAAACAAAGGATCTCTTCGAGTGGGTGCTGAAACAAGAATGTTTTGAGAAAACGGCTTTCATGTTGTTTCTCAACAAATTTGATATATTCGAGAAGAAGGTTCTGAAGGTTCCGCTCAATGTTTGCAACTGGTTCAAAGATTACCAGCCAGTTTCAAACGGAAAACAAGAGACTGAGCATGCTTACGAGTATGTGAAGAAAAAATTTGAGGAGTTGTATTTTCAGAGCACTGCCCCAGATCGGGTAGACCGGGTATTTAAGGTCTACCGCACGACCGCTCTTGATCAGAAGCTCGTGAAAAAGACGTTCAAGCTCGTTGACGAGACTTTACGGCGACGAAACCTCTTTGAGGCGGGATTATTGTGA 1203 42.14 MGLLCSKSRNYNGADAEENAQAADIERRIERETKAEKHIQNLLLLGAGESGKSTIFKQASLLLIQLINVALLMQIKLLFQTGFDEAELKSYISVIHANVYQTIKILYDGSKELSQDDTDSLKYVVSSENKEVGERLSKIGGRLDYPRLTKELAHDVETLWKDAAIQETCARGNELQVPDCAQYFMGNLERLSDVNYVPTKEDVLHARVRTTGVVEIQFSPVGKNKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDESKNGMMETKDLFEWVLKQECFEKTAFMLFLNKFDIFEKKVLKVPLNVCNWFKDYQPVSNGKQETEHAYEYVKKKFEELYFQSTAPDRVDRVFKVYRTTALDQKLVKKTFKLVDETLRRRNLFEAGLL 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 53256025 53259622 + BLOR01439 Blo01g01439 55879

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01439 400 Gene3D - 42 388 IPR027417 -
Blo01g01439 400 SUPERFAMILY Transducin (alpha subunit), insertion domain 83 208 IPR011025 GO:0007165
Blo01g01439 400 CDD G-alpha 42 394 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Blo01g01439 400 PRINTS Plant G protein alpha subunit signature 335 350 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Blo01g01439 400 PRINTS Plant G protein alpha subunit signature 286 297 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Blo01g01439 400 PRINTS Plant G protein alpha subunit signature 27 36 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Blo01g01439 400 PRINTS Plant G protein alpha subunit signature 352 364 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Blo01g01439 400 PRINTS Plant G protein alpha subunit signature 216 231 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Blo01g01439 400 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN ALPHA-1 SUBUNIT 1 400 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Blo01g01439 400 ProSiteProfiles G-alpha domain profile. 38 400 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Blo01g01439 400 Pfam G-protein alpha subunit 23 388 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Blo01g01439 400 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 397 IPR027417 -
Blo01g01439 400 PRINTS Alpha G protein (transducin) signature 299 308 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Blo01g01439 400 PRINTS Alpha G protein (transducin) signature 231 248 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Blo01g01439 400 PRINTS Alpha G protein (transducin) signature 253 281 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Blo01g01439 400 PRINTS Alpha G protein (transducin) signature 41 56 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Blo01g01439 400 PRINTS Alpha G protein (transducin) signature 196 218 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Blo01g01439 400 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 1 400 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Blo01g01439 400 SMART galpha_1 19 399 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Blo01g01439 400 Gene3D - 84 209 IPR011025 GO:0007165
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01439 K19729 GNAT3; guanine nucleotide-binding protein G(t) subunit alpha 3 - pvy:116145770 687.182
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g01439 Blo12g01033 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01439 Blo-Chr1:53256025 Blo03g00101 Blo-Chr3:3223966 5.60E-53 dispersed
Blo01g01439 Blo-Chr1:53256025 Blo12g01033 Blo-Chr12:28207603 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g171 Blo01g01439 Blo12g01033 Bda01g00643 Bda03g00121 . Bpe02g00514 . Bma01g02190 . . . . Car09g00318 . . . Cpe06g00263 . . . . . . . Cla05g01634 Cam05g1743 Cec05g1752 Cco05g1809 Clacu05g1735 Cmu05g1619 Cre05g1747 Cone4ag1703 Cone7ag1619 . . Lsi04g01381 . . . . . . . . Bpe04g00106 . . . . Cmo09g00370 Cma09g00371 . Car01g01312 . . Cpe02g00295 Bhi09g03073 Tan01g3487 . . Hepe01g1922 . . . . . . . . . . . . Cme07g00170
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004075 2 3 2 1 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 0 7 2 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01439 Blo_Chr01 FPKM 23.449949 26.871027 30.438786 29.593082 23.065033 23.065973 25.510586 30.706503 27.505718 28.757719