Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01443 ATGGCGGCTACTTTGGTCCGTCTCTCCCTTTCCTCTCCCCCCAAGCTATCCTTCTTTGACTGCTCCGCAGACAACGGCCGCCGCTTTGACTTACGGCCTCGCTTTCCCAATCGGCAACTTCGTCACCGCCCTTTCTCCTTCCCTCGACAGCACCACCGTTATCGGCGACTGAACAAGCTTACTGTCCGCATTTCAAATGCCCTCGAGGTTCGACCTTCAACGCAAAATGCAGCGTTTCAACCAGAACGGCCGGAAGAGCTGTCCGTTCTCCTCGACGTTTCGGGAATGATGTGCGGTGCTTGTGTTTCTCGAGTCAAATCCGTTCTTTCTTCCGACGATCGGGTTGATTCTGTCGTAGTCAACATGTTGACCGAGACGGCGGCAATTCGTTTGAAGCCACAGATGGTCGATCAGGAAGCGGATTCGGCCGCGGAAGTGGCGGGAAGACTTGCTCAAAAATTGACGGAGTGTGGCTTCCCGACGAATCAGAGGGTTTCCGGGATGGGAGTATCGGATAATGTGAAGAAGTGGAAGGAGATGGTAAAGAAGAAGGAGAGTATGCTCGACGAGAGCCGGAATCGGGTGGCTTTTGCTTGGACTTTGGTAGCATTATGTTGTGCTTCGCATGCTTCACACATATTGCATTCCCTTGGTATTCACATTGCACATGGATCATCGTGGGATATACTTCAAAACTCGTATCTAAAGGGCAGCTTGGCTTTGGGAGCTCTGTTGGGTCCGGGACGAGACTTGCTGTTTGATGGTCTGAGGGCATTTAAGAAGGGATCGCCAAATATGAATTCGCTTGTAGGCTTTGGTGCTGCTGCTGCTTTTACGATCAGTATGGTCTCACTTCTTAACCCTGGACTAGCATGGGATGCCTCCTTCTTTGATGAACCGGTCATGCTTCTTGGTTTTGTGCTCCTTGGACGTTCACTGGAAGAAAAGGCAAGGATCAGGGCATCTAGTGACATGAACGAACTTCTGTCATTATTATCCACTGGCTCACGACTTGTAATAGCCTCCCCAGAAAGTGATTCCTCCTCCGAGAATGTACTCTCCCCTGATGCTATTTGCATTAGTGTTCAAACTGATGATATACGAGTTGGAGATTCAATTTTGGTTTTACCCGGAGAGACCATACCCGTGGACAAGGGACTTTGCTTTAGGTGTGATGAGAAGTTCACCTTTGGGCATCAGTGTAAGAAAAAATTGAATGCAGTGGTGGGATTAACTACTCCTCACACTATGAGATTGTGGGGGACTATCAAAGGCAGGAAAGTAATTGTGTTGATAGATTGTGGAGCAACTCATAATTTTGTTGCTAAACAATTGGTTGAGGATTTGCAACTCCCAATTTCTCATTCTTCGGACTATAATGTACAGTTAGGGAATGGGATTCTCAAATGGCGGCCATACTTGTTAGGTCGCCATTTTATTGTTCGCACGGATCAGCGAAGTCTGAAGTTTCTGTTGGAGCAGCGTTTGGTGGCTGTGGAACATCAAAAATGGCTGACGAAATTACTGGGCTTTGATTTTGAAGTGCAATACAAGCCTGGTGTTGACAATTTGGTGGCCGATGCCTTGTCCAGGAAGGGAGAGTTGTCTACTTCTGAATTAAATGGAATTTTATGTCATTGTCTGTTGGATGTTTGGGAGATAGAAAAGGAGGTTGATGCTGATCCTAAGCTTAGTACTATTAAGGTGACGCTGTTATCTGACCAGAGCTCCTCACCAGGTTTCTTCTTGTCTAATTCTCTGTTATTTTTTCGGCAGCACAAGGTCCTTTCTAGCACTTCCCGTTTCATCCCTCGTATTTTGTCTTTATTTCATGCGAGCCCAGTTGGCGATCATGCTAGCTTTGTGAAAACTTATCGGAGGTTATTGGCAGAGTTGTTTTGGTTTGGAATGCGTAAGGCTGTCAAAATGTTTGTTCATTCTTGTGAAATTTGCCAACGTAACAAATATGAGTCCCTTTCCCCAGCGGGGTTAATTCAGCCTTTACCCATTCCTAATGATATTTGGGAAGATATTACCATGGATTTCATTGAGAAACTTCCGAAATCGGAGACTATGGATACTATTTTGGTGGTAGTGGACCGTTTGAGTAAGTATGCTCACTTCCTTCCCATGCGGCATCCTTTTACAGCTAAGTCAGTTGCGGAGGTATTTTTTTCTAATATTTTTTGTCTCCATGGGTTGCCTAACTCTATCATTTCTGATAGGGATAAAATTTTTGTTAGTGCTTTTTGGAAGGAATTATTTCTGTTGCAGGGGACTATGCTTAAATTTAGCTCCGCATATCACCCTCAGACGGATGGCCAATCCGAGGTGGTTAATCGGACTATCGAAGCTTATTTGCTTTATAAACGTGATCCTCCTCCTTTGTTGAAGTTCGATTCTGCTCCTTCTTCAGTGATTCCAACTGTGGATGTATTGATTCAGGAGAGGGATGATATTTTGCACATATTAAAGCTTCATTTACAAAAAGCCCAAGTTCATATGTCTTCATCTGCTAATAAGAAGAGGCGGGATTTAGAGTTTCAGGTGGGTGAATCTGTGTGGTTACGCCTCCAACCGTATCGACAAAAATCTGTGGCCAAAAAATTATGTGTTAAATTGTCTCCTCGGTATTTTGGACCGTTTGAGGTTTTACAGCGTATTGGACCGGTTGCCTACAAGCTCAAACTTCCAGATTCCTCTTTAATTCATCCGGTTTTTCATGGAAAAGTTCTTGCAGGAAGAAGCGTAGTGGACGAATCCATGCTCACAGGGGAATCTCTACCTGTATTTAAGGAAAAAGGCATTGTGGTCTCTGCTGGAACAATAAATTGGGATGGTCCTTTGAGAATGGAAGCCTCTTCAACTGGCTCCAATTCAACTATATCGAAGATTATTCGCATGGTTGAGGATGCTCAAGGTCGTGAAGCACCAATTCAAAGGCTTGCAGATTCTATAGCTGGACCATTTGTGTACACTGTACTAACTCTCTCAGCAGCAACGTTTTCCTTTTGGTATGTGTACTACTTTGGGACCCATATTTTTCCAGATGTTTTGATGAATGATGTTGCTGGACCAGATGGAGATCCATTACTTTTAAGCTTGAAACTTGCGGTGGATGTCTTGGTTGTTTCTTGCCCATGTGCACTTGGACTTGCCACTCCTACGGCAATCCTAGTTGGCACTTCCCTAGCAGGGGCAAGACAAGGACTTCTTATAAGGGGAGGAGATGTATTAGAGCGTTTGGCAGGCATTAATTGTGTTGCTCTTGACAAGACAGGGACTCTTACTGAAGGAAAACCATCTGTTTCTGCTGTTGCTTCCTTTGCCTATGCGGAATCAGAGATTCTCAAAATTGCTGCTGCAGTGGAGAAGACTGCATCACATCCAATCGCAAAAGCCATAGTAGATAAAGCAGAATTGTTGACTTTGACTATTCCATTTACCAAAGGGCAAATAGTGGAACCTGGTTTTGGAACTTTGGCAGAAGTAGAAGGGAAATTAGTTGCAGTTGGTTCTTTTGAATGGGTGCATGCACGGTTCCAAGAAAAGGCAACGCTTTCTGATCTTAAAAAACTAGATCATAATGTGCATCAGTCATTAGAAGGAACAACCTTATCAAATAATTCGAAAACAGTTGTTTATGTTGGACGCGAAGGAGAAGGAATTATCAGTGCTATTGTGATTTGTGATAATTTGCGTCATGATGCTGCATCTACTGTCACAAGGCTCCAGCAGAAGGGTATTAGAACTATTCTCTTATCCGGAGACAGGGAAGAGGCAGTTGCAAATATAGCGGAAAAGATTGGAATAGAAAAAGAATATGTTGCATCCTTGACTCCACAGCTAAAATCTGAAGTTATTTCCTCTCTTAAATTGGCCGGACATCAAGTTGCCATGGTAGGTGATGGCATCAACGATGCACCATCTTTGGCTCTTTCGGATGTTGGAATTGCCCTGCAGATTGAAGCACAGGAGAATGCTGCTTCCAATGCAGCGTCAATTTTGCTTCTTGGGAACAGATTGTCACAGGTTGTAGATGCTTTGGAACTTGCGCAAGCAACAATGGCTAAAGTGTACCAAAATCTATCATGGGCAATAGCCTACAATTTGATTGCCATTCCAATTGCTGCCGGAGTACTACTTCCCCAGCTTGATTTTGCGATGACGCCATCCCTTTCTGGCGGACTTATGGCTTTGAGCTCAATTTTTGTCGTCTCCAACTCACTACTTCTCCAGCTTCATAGATTTGAGAGGAGCAAGAAGAGGTAG 4272 44.31 MAATLVRLSLSSPPKLSFFDCSADNGRRFDLRPRFPNRQLRHRPFSFPRQHHRYRRLNKLTVRISNALEVRPSTQNAAFQPERPEELSVLLDVSGMMCGACVSRVKSVLSSDDRVDSVVVNMLTETAAIRLKPQMVDQEADSAAEVAGRLAQKLTECGFPTNQRVSGMGVSDNVKKWKEMVKKKESMLDESRNRVAFAWTLVALCCASHASHILHSLGIHIAHGSSWDILQNSYLKGSLALGALLGPGRDLLFDGLRAFKKGSPNMNSLVGFGAAAAFTISMVSLLNPGLAWDASFFDEPVMLLGFVLLGRSLEEKARIRASSDMNELLSLLSTGSRLVIASPESDSSSENVLSPDAICISVQTDDIRVGDSILVLPGETIPVDKGLCFRCDEKFTFGHQCKKKLNAVVGLTTPHTMRLWGTIKGRKVIVLIDCGATHNFVAKQLVEDLQLPISHSSDYNVQLGNGILKWRPYLLGRHFIVRTDQRSLKFLLEQRLVAVEHQKWLTKLLGFDFEVQYKPGVDNLVADALSRKGELSTSELNGILCHCLLDVWEIEKEVDADPKLSTIKVTLLSDQSSSPGFFLSNSLLFFRQHKVLSSTSRFIPRILSLFHASPVGDHASFVKTYRRLLAELFWFGMRKAVKMFVHSCEICQRNKYESLSPAGLIQPLPIPNDIWEDITMDFIEKLPKSETMDTILVVVDRLSKYAHFLPMRHPFTAKSVAEVFFSNIFCLHGLPNSIISDRDKIFVSAFWKELFLLQGTMLKFSSAYHPQTDGQSEVVNRTIEAYLLYKRDPPPLLKFDSAPSSVIPTVDVLIQERDDILHILKLHLQKAQVHMSSSANKKRRDLEFQVGESVWLRLQPYRQKSVAKKLCVKLSPRYFGPFEVLQRIGPVAYKLKLPDSSLIHPVFHGKVLAGRSVVDESMLTGESLPVFKEKGIVVSAGTINWDGPLRMEASSTGSNSTISKIIRMVEDAQGREAPIQRLADSIAGPFVYTVLTLSAATFSFWYVYYFGTHIFPDVLMNDVAGPDGDPLLLSLKLAVDVLVVSCPCALGLATPTAILVGTSLAGARQGLLIRGGDVLERLAGINCVALDKTGTLTEGKPSVSAVASFAYAESEILKIAAAVEKTASHPIAKAIVDKAELLTLTIPFTKGQIVEPGFGTLAEVEGKLVAVGSFEWVHARFQEKATLSDLKKLDHNVHQSLEGTTLSNNSKTVVYVGREGEGIISAIVICDNLRHDAASTVTRLQQKGIRTILLSGDREEAVANIAEKIGIEKEYVASLTPQLKSEVISSLKLAGHQVAMVGDGINDAPSLALSDVGIALQIEAQENAASNAASILLLGNRLSQVVDALELAQATMAKVYQNLSWAIAYNLIAIPIAAGVLLPQLDFAMTPSLSGGLMALSSIFVVSNSLLLQLHRFERSKKR 1423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 53333028 53346668 - BLOR01443 Blo01g01443 55883

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01443 1423 Pfam Heavy-metal-associated domain 91 159 IPR006121 GO:0046872
Blo01g01443 1423 PANTHER ATP7, ISOFORM B 78 384 - -
Blo01g01443 1423 PANTHER ATP7, ISOFORM B 908 1415 - -
Blo01g01443 1423 CDD HMA 91 160 IPR006121 GO:0046872
Blo01g01443 1423 Gene3D - 1100 1233 IPR023299 GO:0000166
Blo01g01443 1423 Gene3D - 665 806 IPR036397 GO:0003676
Blo01g01443 1423 Gene3D - 566 655 - -
Blo01g01443 1423 SFLD Haloacid Dehalogenase 1072 1354 - -
Blo01g01443 1423 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 909 1393 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Blo01g01443 1423 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 909 1412 IPR027256 GO:0006812|GO:0016021|GO:0019829
Blo01g01443 1423 ProSiteProfiles Heavy-metal-associated domain profile. 88 163 IPR006121 GO:0046872
Blo01g01443 1423 Gene3D Acid Proteases 403 519 IPR021109 -
Blo01g01443 1423 CDD RNase_HI_RT_Ty3 469 532 - -
Blo01g01443 1423 Coils Coil 174 194 - -
Blo01g01443 1423 SUPERFAMILY Calcium ATPase, transmembrane domain M 970 1083 IPR023298 -
Blo01g01443 1423 SUPERFAMILY HMA, heavy metal-associated domain 85 139 IPR036163 GO:0046872
Blo01g01443 1423 CDD retropepsin_like 419 466 - -
Blo01g01443 1423 ProSiteProfiles Integrase catalytic domain profile. 665 837 IPR001584 GO:0015074
Blo01g01443 1423 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 1091 1182 IPR023299 GO:0000166
Blo01g01443 1423 SUPERFAMILY DNA/RNA polymerases 466 518 IPR043502 -
Blo01g01443 1423 SUPERFAMILY Calcium ATPase, transduction domain A 910 969 IPR008250 -
Blo01g01443 1423 Gene3D - 1080 1352 IPR023214 -
Blo01g01443 1423 PRINTS P-type cation-transporting ATPase superfamily signature 1301 1320 - -
Blo01g01443 1423 PRINTS P-type cation-transporting ATPase superfamily signature 1247 1257 - -
Blo01g01443 1423 PRINTS P-type cation-transporting ATPase superfamily signature 919 933 - -
Blo01g01443 1423 PRINTS P-type cation-transporting ATPase superfamily signature 1089 1103 - -
Blo01g01443 1423 ProSitePatterns E1-E2 ATPases phosphorylation site. 1091 1097 IPR018303 -
Blo01g01443 1423 Pfam haloacid dehalogenase-like hydrolase 1085 1313 - -
Blo01g01443 1423 SUPERFAMILY HAD-like 1088 1409 IPR036412 -
Blo01g01443 1423 Gene3D - 83 165 - -
Blo01g01443 1423 Pfam RNase H-like domain found in reverse transcriptase 467 510 IPR041373 -
Blo01g01443 1423 Pfam E1-E2 ATPase 909 1064 - -
Blo01g01443 1423 Pfam Integrase zinc binding domain 602 656 IPR041588 -
Blo01g01443 1423 SFLD p-type atpase 1072 1354 IPR044492 -
Blo01g01443 1423 Gene3D - 905 973 - -
Blo01g01443 1423 SUPERFAMILY Ribonuclease H-like 667 792 IPR012337 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01443 K17686 copA, ctpA, ATP7; P-type Cu+ transporter [EC:7.2.2.8] - csv:101214637 785.793
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01443 Blo-Chr1:53333028 Blo07g00296 Blo-Chr7:3423424 1.04E-173 dispersed
Blo05g00635 Blo-Chr5:19859014 Blo01g01443 Blo-Chr1:53333028 4.49E-17 dispersed
Blo11g00881 Blo-Chr11:17286262 Blo01g01443 Blo-Chr1:53333028 3.23E-40 dispersed
Blo11g00939 Blo-Chr11:20109355 Blo01g01443 Blo-Chr1:53333028 1.02E-51 dispersed
Blo12g00007 Blo-Chr12:653843 Blo01g01443 Blo-Chr1:53333028 8.53E-46 dispersed
Blo15g00596 Blo-Chr15:13593908 Blo01g01443 Blo-Chr1:53333028 4.80E-26 dispersed
Blo01g00590 Blo-Chr1:6470956 Blo01g01443 Blo-Chr1:53333028 2.95E-17 transposed
Blo02g00673 Blo-Chr2:18121786 Blo01g01443 Blo-Chr1:53333028 2.82E-27 transposed
Blo02g00870 Blo-Chr2:33650732 Blo01g01443 Blo-Chr1:53333028 1.34E-51 transposed
Blo05g00496 Blo-Chr5:8260930 Blo01g01443 Blo-Chr1:53333028 1.33E-19 transposed
Blo05g00634 Blo-Chr5:19586260 Blo01g01443 Blo-Chr1:53333028 1.58E-37 transposed
Blo06g00167 Blo-Chr6:7041286 Blo01g01443 Blo-Chr1:53333028 6.39E-06 transposed
Blo07g01007 Blo-Chr7:29682551 Blo01g01443 Blo-Chr1:53333028 7.31E-59 transposed
Blo15g00576 Blo-Chr15:11989859 Blo01g01443 Blo-Chr1:53333028 3.40E-47 transposed
Blo15g00786 Blo-Chr15:26855563 Blo01g01443 Blo-Chr1:53333028 3.26E-09 transposed
Blo16g00012 Blo-Chr16:707425 Blo01g01443 Blo-Chr1:53333028 7.48E-11 transposed
Blo16g00844 Blo-Chr16:35658624 Blo01g01443 Blo-Chr1:53333028 4.30E-50 transposed
Blo19g00320 Blo-Chr19:20753187 Blo01g01443 Blo-Chr1:53333028 1.74E-07 transposed
Blo01g01443 Blo-Chr1:53333028 Blo12g00279 Blo-Chr12:16649107 8.46E-20 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g165 Blo01g01443 . Bda01g00641 . . Bpe02g00510 . . . . . . Car09g00315 . . . Cpe06g00260 . . . . . . . Cla05g01629 Cam05g1738 Cec05g1746 Cco05g1803 Clacu05g1729 Cmu05g1614 Cre05g1742 . . Cone17ag0948 . Lsi04g01385 . . . . . . . . . . . . . Cmo09g00365 Cma09g00366 . . Car05g00660 . . Bhi09g03080 . . . . . . . . . . . . . . . . Cme07g00175
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010516 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01443 Blo_Chr01 FPKM 2.976131 3.428896 5.041551 4.983168 4.526385 5.624162 5.498469 1.863864 1.751103 1.691123