Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01452 ATGGCAGATCCAGGAGAGATTTTTCCCTACGACGACCCCTCCTACTACGGCCTAAGCACCGATTACGTTCTCAATATGATGACTGATCAGAACCCTACCTTCGCCAATTTGGCGAACTTGGCCGGTCCTTCTTCTAGTTCCGTCCCCACGCTAGAAGCGGAGGGAGAACTCGGGGACTCCGACATTCTATTTGATCAGTCCGGATGGGAATGGCTCAATTATCAACCTATCTCCGGCGGGAGTTCCGCTGCTGGTCCTTCAAAGGTCGACGGAGAGGGTTGTGGAGGAGGAGGCGGCGAAACAAGTAATCCACCGCCGGAGAATGTCGAACCCCAGATTGGTAGTAGCTTCGTCGATATGAGGCAACTCTTGGTTTGGCCGATTGCACCAGTGCCTTTCTTCTGTAGTTGCTGCCATGTTATGAGAGTAATGGTTCATACTAATGGCGTACGTTTCAGAAAACTCGAGATTCATGGAAAAGTCGGTTTGATCAGTCATGCAATTTTCGAAGATCGGCCCACCCTCGCTCCAAATTCTTCCAATTCTCAGTATCAAATGTTTGATTTTTGCAACAACAATATGGACGAAATCAAGCTGTTTTTACTACAATACAACGTCAACAATGTTCTTGCTGATTACTATCCTGTTCCAGAACCTATGTCGTTCTTCTACGACACCCTTTGCGTTGGAATGGGGCGGGATGATAACGCTAATCCTAAAAATGAACGACAACCCCCGCAGTCAAACCAACCTCCAGCCCCTCACCCACCACAGCCTCCTCCTCCCCCACCCCCCCCCCCTCCCCAGCTGCCCCCTGTCCCTCCACCCCCTGGAAATTCAGGTCCGCCAGGAGGAGCCCTAGGAGAAAGACAGGGCGGTCGTAACAGAACCAGAAATCGGACAAGAACATCGTTGGCGGCGCAGCTAGTGCAGCGGCAGAGAACAGGGAAGATGACAGTTAGCGATCTGCACGAGTATCTCCATCTTCCTGTTCGTGAGGATTCTAGGAAAACGGAGGTCTTTAGGGTGGAAGACATGGAAAACGGTGCTTCGCATAAAACGCTTACGGTTGAGGAGGTCTTTGGGGATCTTAAAGGTCGCAGGGTTGGCCTGATTAAAGCTCTTACTACTGGTATGTCTTTCTTTTTAATTCAAGTCCTCTCTTTTTCCTTCATTTGCGAGTACGGACTGAAGTTTGTCTCTCGTCGCGCAGATTTTGAAAGATTTTATAGCCAGTGTGATCCCGATAAGGAAAACGTCTGCCTTTATGGATATCCCGATGGGAATTGGGCTGTCAGTTTACCTGCCGAAGAAGTGCCTTCTGAGCTTCCAGAACCTGCACTGGGAATTAATTTTCCCAGAGATGGGATGCGTGCGAAGGATTGGTCATCCTTGGTTGCTGTCCACAGTGATTCATGGTTACTTTCTGTAGCCTTTTACTACGGTGCTAGGTTTGGCTTTCGTCAAACTGATAGGATGCGTCTTTTTGATATGATAAACAATCTTCCAACAATATTTGAGGTTCTTAAGGAGTTAGCGGAGAAACAAAAGAAGGCAGAGGCATCAGTTTCAAAACCCAGCCTCAAAAAGTTTACATCCAATTCAAAGCAATGTACTGATTCTGAGGAAGAACTTTCAATGCCAATGCAAGTCGTGGATGAGAAAGATGGTGATGGACAGGAAGAAACTTTATGTGGAGCCTGTGATGAGAACAATGGAACTGATGAATTCTGGATCTGCTGTGACGTGTGTGAGAAGTGGTTCCATGGCAAATGTGTCAAGATCACCGCAGCAAGAGCAGAGCATATCAAGCATTACAAATGCCCGTCTTGCAGTAACAAGAGAGCCCGACAATAA 1857 47.87 MADPGEIFPYDDPSYYGLSTDYVLNMMTDQNPTFANLANLAGPSSSSVPTLEAEGELGDSDILFDQSGWEWLNYQPISGGSSAAGPSKVDGEGCGGGGGETSNPPPENVEPQIGSSFVDMRQLLVWPIAPVPFFCSCCHVMRVMVHTNGVRFRKLEIHGKVGLISHAIFEDRPTLAPNSSNSQYQMFDFCNNNMDEIKLFLLQYNVNNVLADYYPVPEPMSFFYDTLCVGMGRDDNANPKNERQPPQSNQPPAPHPPQPPPPPPPPPPQLPPVPPPPGNSGPPGGALGERQGGRNRTRNRTRTSLAAQLVQRQRTGKMTVSDLHEYLHLPVREDSRKTEVFRVEDMENGASHKTLTVEEVFGDLKGRRVGLIKALTTGMSFFLIQVLSFSFICEYGLKFVSRRADFERFYSQCDPDKENVCLYGYPDGNWAVSLPAEEVPSELPEPALGINFPRDGMRAKDWSSLVAVHSDSWLLSVAFYYGARFGFRQTDRMRLFDMINNLPTIFEVLKELAEKQKKAEASVSKPSLKKFTSNSKQCTDSEEELSMPMQVVDEKDGDGQEETLCGACDENNGTDEFWICCDVCEKWFHGKCVKITAARAEHIKHYKCPSCSNKRARQ 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 53610034 53622421 + BLOR01452 Blo01g01452 55892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01452 618 ProSiteProfiles Zinc finger PHD-type profile. 562 614 IPR019787 -
Blo01g01452 618 Pfam Alfin 404 510 IPR021998 GO:0006355|GO:0042393
Blo01g01452 618 MobiDBLite consensus disorder prediction 234 304 - -
Blo01g01452 618 MobiDBLite consensus disorder prediction 245 282 - -
Blo01g01452 618 Pfam PHD-finger 565 614 IPR019787 -
Blo01g01452 618 SMART PHD_3 564 612 IPR001965 -
Blo01g01452 618 PANTHER CPG BINDING PROTEIN 404 617 IPR045104 GO:0006355|GO:0042393
Blo01g01452 618 PANTHER CPG BINDING PROTEIN 353 386 IPR045104 GO:0006355|GO:0042393
Blo01g01452 618 CDD PHD_AL_plant 564 614 IPR044104 -
Blo01g01452 618 SUPERFAMILY FYVE/PHD zinc finger 555 615 IPR011011 -
Blo01g01452 618 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 404 617 - -
Blo01g01452 618 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 353 386 - -
Blo01g01452 618 MobiDBLite consensus disorder prediction 81 112 - -
Blo01g01452 618 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 555 613 IPR013083 -
Blo01g01452 618 ProSitePatterns Zinc finger PHD-type signature. 565 611 IPR019786 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo01g01452 Blo17g00276 CCT
Blo01g01452 Blo17g00276 ECH
Blo01g01452 Blo12g01023 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01452 Blo-Chr1:53610034 Blo03g00275 Blo-Chr3:5650017 6.98E-80 dispersed
Blo12g01024 Blo-Chr12:28152758 Blo01g01452 Blo-Chr1:53610034 1.56E-57 dispersed
Blo14g00563 Blo-Chr14:8484159 Blo01g01452 Blo-Chr1:53610034 8.85E-45 dispersed
Blo16g00234 Blo-Chr16:5245768 Blo01g01452 Blo-Chr1:53610034 5.02E-68 dispersed
Blo01g01452 Blo-Chr1:53610034 Blo12g01023 Blo-Chr12:28150001 2.55E-84 wgd
Blo01g01452 Blo-Chr1:53610034 Blo17g00276 Blo-Chr17:2903439 1.81E-89 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11920 PF12165 Alfin 2.00E-51 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01452 - - rcu:8258558 337.421