Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01454 ATGGATTTCAGAATGATGGGGTTGGATTCTCCTCTTTTCTCCACCCTTCAGCACCTGATGGATGCCAGCGAAGACTCCGATGTGTCCTTTAATGCTCCGACCAGAACGTACGTCAGCGACGCCAAGGCCGTCGCTGCTACTCCGGCTGACATCAAGGAGTATCCTAACTCATACGTCTTCATCATTGACATGCCAGGGCTGAAATCCGGAGACATCAAGGTTCAGGTTGAGGAAGACAATGTGCTCTTGATTTCCGGCGAGAGGAAGAGGGAGGAGGAGATAGAGGGAGCCAAGTATGCGAGGAAGGAAAGGAGGATGGGCAAGTTCCTGAGGAAGTTTGTGCTGCCAGAGAACGCGAACACCGACAAAATATCGGCAGTGTGCCAGGACGGAGTTCTGACTGTGGCGATTGAGAAGCTGCCCCCGCCGGAGCCGAAGAAACCGAAGACCATTGAGGTGAAGGTTGGTTAA 471 52.87 MDFRMMGLDSPLFSTLQHLMDASEDSDVSFNAPTRTYVSDAKAVAATPADIKEYPNSYVFIIDMPGLKSGDIKVQVEEDNVLLISGERKREEEIEGAKYARKERRMGKFLRKFVLPENANTDKISAVCQDGVLTVAIEKLPPPEPKKPKTIEVKVG 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 53632238 53632708 + BLOR01454 Blo01g01454 55894

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01454 156 Gene3D - 6 155 IPR008978 -
Blo01g01454 156 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 8 155 - -
Blo01g01454 156 Pfam Hsp20/alpha crystallin family 50 154 IPR002068 -
Blo01g01454 156 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 40 154 IPR002068 -
Blo01g01454 156 PANTHER 18.0 KDA CLASS II HEAT SHOCK PROTEIN 8 155 - -
Blo01g01454 156 SUPERFAMILY HSP20-like chaperones 15 148 IPR008978 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01454 K13993 HSP20; HSP20 family protein - pvy:116117493 260.766
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g01454 Blo17g00278 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01454 Blo-Chr1:53632238 Blo14g00669 Blo-Chr14:14714742 1.22E-76 dispersed
Blo04g01225 Blo-Chr4:23346996 Blo01g01454 Blo-Chr1:53632238 5.62E-06 transposed
Blo01g01454 Blo-Chr1:53632238 Blo12g01022 Blo-Chr12:28146148 2.10E-79 wgd
Blo01g01454 Blo-Chr1:53632238 Blo17g00278 Blo-Chr17:2948956 2.86E-65 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g132 Blo01g01454 . . . . . . . . . Cma01g01713 . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01402 . . . Blo17g00278 . . Bda13g01590 . . . . . . . . . Car01g01331 . . . . . . . . . . . . . . . . . . . . Cme07g00196
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001297 3 2 4 4 3 2 2 2 2 1 1 2 3 2 2 3 2 3 3 2 1 2 1 3 2 2 3 3 2 7 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01454 Blo_Chr01 FPKM 0.0 0.0 0.381914 0.0 0.83511 0.495268 1.182389 1.461057 1.139752 1.245884