Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01455 ATGGTTGAGATACTGCAGCTACCCTACGATGCTACAGTCCGCTTGGTTCTCGCTTCACTGGAGCGAAATTACTTACCCGACGCCATTATTAGAAGGCTAACTCGGTTGCTGTTAGCCAGTCGTCTTCGCTCTTGTTACTGCCCTTCCTCTCATCTCCAACTCTCCAAGCTTCTCCAGTTCGCGCACTCTCTAAAGGAAATGCCTATAGCTATCCATACGAACGAACCAAAAGACCAGCATTATGAACTCCCAACCTCCTTCTTCAAGCTGGTGTTGGGAGAGAATCTAAAGTACAGCTGCAGTTACTTCGACGATAATTCAAAGACCTTAGAGGAGGCCGAGAAAGCAATGCTGGAACTGTATTGTGAAAGGTCACAACTTGAGGATGGCCAGACTGTTCTTGACGTTGGGTGTGGTTGGGGATCACTTTCTTTGTATATTGCACAGAACTACAGGAATTGCAGGGTCACTGGGATTTGCAATTCGACCACCCAGAAAGCTTATATTGATGGAAAGAGTCGAGATCTTCATCTGGACAATGTGGAGATCATAGTTGCAGATATCAGTAAATTTGAAATGGAAGCTGTCTACGATCGAATATTTTCCATCGAAATGTTCGAGCATATGAAGAACTATAAGGATCTTCTCAAGAAAATATCCAGATGGATGAAAGAGGATGGTCTTCTCTTTGTTCATTATTTCTGCCACAAAGCATTTGCTTATCACTTCGAGTTCATAAGCTTTGATCTGGACTGCTCATTTGATCTCGCCTTTATTCTTCTCGACAAAAACGACGACGATTGGATCACTCGATACTTCTTCACCGGCGGTACTATGCCTTCTGCAAATCTACTCCTCTACTTTCAGGATGATGTTTCCGTCGTTAATCACTGGCTGGTAAACGGGAAGCATTACGCTCAAACAAGTGAGAAGAAGAAGGATAAAAGAAAAGATAGTAAGGGAATCAGGGGTCGGGGAGGTGATTCGGATCTAACTGATAGACTCGAAGAGAATTATACCCTTCCCTTGTCAGGTCGTAAATGTCAAGATATGATAGTTCCCGGAATGGAGAAGAAAGCATTCCTCATGGAGGACTTGAGTGATTTCACTGATGCTAGTTTACGGGTGCACTGGAAAAGAAAGGGTGATATATCACAGACTCGCCCTTCTAAAGCTATACAGGGCGTGGTTGAGTTTGATGAGATTTTAATGCACAAGTGTTCAGTGTATGGTGGTAGAAGTGGGCCTAACCATTCAGCAAAGTACAATCCTATACTTTTCTCGATTTATGTTTCTGTTATTGGGGTTCAAGGGCTTGATATTGGGAAGCATTGGATTGATGTCACGAGGCTTTTACCTCCTGCTTTGGAAGATCTGGAAGGGGAGAAAGGTTCGGTTAGATGGACAACGACCTTTAAACTCTCCGGCAAGGCAAATGGTGCCCTTTTACATGTTAGTTTTTGTTTTTTGACTATGAAAAATGGCTTGGCCAAACTTGGACAATTTGAAGTGCCAAAACTCTTAAACTTGATACAGAATAGGTCTAATGCAGCAAAAATTACTGCAGGGTTTGGCACTACTAGTACTGAAATGGCTCAGCCAGTTAGGGGTGTTTTGAGCAGTTTGAACTATGGATCTGTTGGTCCAGCCCATTCTGTTGATGAGAGGATCTGTCAGGAGGTCTTGCTGAATCCAAGCTTGGAACTCTCACAGTCAATTGACTTCTTATATCAGAAACTGGATGAAGGGGACTTGTGTGGTTCAGCAGAGGTGGATTTTGAATTTTTAGAGCAGCTAAGTTTGGAACCTGATACAAAATTGGAGTCTGAAAAAGAAACTGATCGAGATTACAGCGAAACTGAGTTTACTGTCGTTGACTGTGGGATAGAAATAAATAATGAGAAACAATGCAAATTTGACGAGGTTGCTGATAAGACCATTTGTTTAGTAAACAACATTCATTCTAAAGATCTTGATGCGGTGGTGAATGATGACAATAGCCCACTTTCCATTGAATCAATTCTAGATTGGCTTGATTTGCCTTCTGAGCACAAGCCAGTGGCCCACTCAGTGGGGAAGGAACCTTCATCATTTGTGAGTAAGCTTCAGGAGCAAGACAATCACACAGATGCGAAAGCAAGTTACACAGAAAGTAAAATACTAAAAAAGTCGTCTAGCTTAGATGATGTCACTGACTCTGTAATAAGTGATTTCTTAGGCATGCTAGGACTAGAGTGTGGTTCCTTTAGGCATTCTGTCTGTGAACCAGAGTCTCCTCGGGAGCTATTATTAAGACAATTTGAGGAGGAAGCCTTAATTTCCTGCAACTCCATTTTTTATTGTGACACCCCTGGCGAGAGGTCAAATTATGGCAGTTGTGATTTATCTGGTTCTGGTCTTAGTAATTATAATGAGAGTTTTGATTTTGCTTCAAGTAATCAATTCAGAGAACAGCACCAAGGCGCTAGCCAGTTAAGAAATAGAAGAAAAGGTCAAATTCTTGAAAACTTGGAGACGGAAGTCCAGACTCAAACATGGGGGATGGATGAGGATATCCAAGACTATCCGCATTATTGCGCTGCTGGATTTGGAAGTCCAATTGAGCTTCCCCCGGATGACCCACTGAAATTACCTCCTCTTGATGAAGGTTTTGATTCCTTTATTCGGTTGAAGGGTGATGGTTTTTTGAGACTTATGAATCCAGCGGTTATTAAAGATTGTAGGGATGAAGGAAAGTTGATCATTCAGCTTTCTCGTCCAGTTGTTCTGCCTGCAGAAATGGGTTCTAATTTTATGGAAATATTGCACCGTTTGGCTTCTATTGGACTAGATAAGCTGTACATGCAGATAAGTAAACTAATGTCCTTGGAAGATATTAATGGAAAGACTATCCCGCAGATAGAGACAGAAGCTGCCTCCAGGAAACCTCTATTGCAAGACAAATTATCAATTGATCATGGATCATCAGATGGGAAGATAGAAGCCGGCAAATTTTCTGGTGAGTGGAATTATAGTGAGATAGGAGAAGACAATGTTTCTCCAGAAGAGCTTATTTATCTAGCAATGGATAGAATTGAAGTCCTTTCTGTTGAAGGGTTGAAAATACAGTCGGACATGTCAAATGAAGACGCACCTTCACAAATCGCTTCATCTTCTAACCACAAATCATTAGTTATTCGAGAATTTCCTGATTCAGTAAATGCTCAAGACAGAAACAGTGACATTGAAGCATTAATGGATCATTCTATAACCTTAGACGAGTGGTTAAAGCTAGATTCTGGATTTATCGATAACGAAAAAAACTACCATGAAAATGTGATGAAGATTCTCGAAGCTCACCATGCAAAGAGCATTGCTATAGATCAAAGATCAACAAGAGATGCAACGGTGGGCAAAGCATCGAGTAAAGAGGCTGGATTATTCGGCAACAACCTCACAGTGGCTCTAATGTTGCAACTTCGAGATCCCTCGAGAAGCTTAGAACCACTTGGTATTCCAATGCTTTGCCTGATTCAGGTTAAAAGAACCTATATCCAGGAACTTGTTTTGATTGAGGAGAGGACCGATGAATTCAATGAAGCAGAAGGAAGTTATATGTATAAATTGGATGACATCCATCTTCTGGGTGTGAATTCTAAGCCTTTGAACGAGCATGTTTGGGGGACGACAGCACAACGCCTGTCCGGATGCCATTGGTTGCTCGCCAATGGAATGGGTAAGACCATTGACCTTCCATTTTCAGAGAACAAAGCTATGAGATGGGATCAAATTTCTATTGCAAGCCCCACTTCGTTTCACTCAGGACTTGGGAGTTCGGAGGAGCCAATGGCCATAGCGCACATGAAAGATTCAGCTACCTCCGCCGTCAATAAATCAGGGAATCGGCAGCGGAGCAACGTCCATCGGTCGGCGTATTTCGCAAGGAGAGAAGCAGCGAAGGTTTTACGATGTGTTCTTCAAGGAGACGCTCGTCGTCGAGCCGTTGGTTCCATCAAGTCGCTAGTTTACAGTCCTTCTGTTAGGAATAAGAAGGGTACCTTTGCTTTAGTTTGCCAAACGCTTAAATATCTCCTCGTAATCAAGGAAGTATGCGAAGCTACTGGCATTTTCAGCAAGAAGTGGAAGAAGCAAGAGGAATTGATCTACGTAATCATGTATGATATTCTTTTTGGCCAGGCAGTTTCCTTAGTTGGAGATGTGGAGAAGTTCCTCATTCGTCAGAAAGATGATTTGGAACTGGCACTAGCAAAGATTTTAGTCAAGAAAAAAGTGAATAGCATTGAACAGTTGATGGCTCTCTACGAAGCTCCTGTGGCAATTTGCAATGCAGATGTTTCAAAGCCTTGTTATGTTCGTGTAAATACACTGAGGATTGATGTTTGTTCTGCATCACAAGAATTAGGGGAAAAATATGTGGTTGAAAAGGATGATGTGGTTCCTCACTTATTAAAACTTCCATCGAATAGTGATCTGCACGAGCATCGTCTGGTAAAAAACGGAAGTATCTTTGTACAAGGAAAGGCAAGTTCCATGGTGGCAGCAGCGCTGGATCCCAAACCAGGATGGGAGGTTCTTGATGCATGTTCAGCACCAGGAAATAAGACTGTTCATCTTGCTGCTCTCATGAAAGGAAAAGGAAAGATTATAGCATGTGAACTGAATGAAGGAAGAATTAGACATATTGAAGTTTTGCATGGAGATTTCGTAACTTTAGATCCAAAAGACTCTGCATACTCCGAAATTCGTGCAATTCTTTTGGATCCTTCTTGCTCTGGATCTGGAACTGCAACTGCAAGATTAGACCATTTACTACCATCACATGGTGCGTGTGGGTCTGCTTCCATTGATGACCCAGAGCGATTACACAAACTTGCAGCATTTCAGACAAAGGCTCTGACACATGCATTATCCTTTCCAGCTGTGGAGAAAATCATTTACAGCACATGTTCCACCCATCAAATTGAAAATGAAGATGTTGTTCAATCCGTTCTGCCTCTGGCCGAGTCTTATGGTTTTCAATTAGTGACACCGTTTCCCAAATGGCAGCGACGAGGCCTCCCAGTTTTTGAAGGAGCAAGCAATTTGCTGCGAACCGACCCTGTCGAAGACAAGGAGGGCTTCTTCATCGCTCTGTTTAGAAGGCAAAACATACTCAATTCCTTAGAAAAGTCTAGTAATGGCCGAAATAAATCATCTAAAGTTTGTCATGGGAGTAAGAGCTCCATAAGAGGTAGGATCAGAAGCGCACGAATACCACCTCTGCATACTGGGTTGTTTAGAAAATGGATGTATGGACGTAGAAGTTGGAGAAGAATGACCCCAAAAGTGTCAGATACTAATCAAGTACAGTGA 5352 42.23 MVEILQLPYDATVRLVLASLERNYLPDAIIRRLTRLLLASRLRSCYCPSSHLQLSKLLQFAHSLKEMPIAIHTNEPKDQHYELPTSFFKLVLGENLKYSCSYFDDNSKTLEEAEKAMLELYCERSQLEDGQTVLDVGCGWGSLSLYIAQNYRNCRVTGICNSTTQKAYIDGKSRDLHLDNVEIIVADISKFEMEAVYDRIFSIEMFEHMKNYKDLLKKISRWMKEDGLLFVHYFCHKAFAYHFEFISFDLDCSFDLAFILLDKNDDDWITRYFFTGGTMPSANLLLYFQDDVSVVNHWLVNGKHYAQTSEKKKDKRKDSKGIRGRGGDSDLTDRLEENYTLPLSGRKCQDMIVPGMEKKAFLMEDLSDFTDASLRVHWKRKGDISQTRPSKAIQGVVEFDEILMHKCSVYGGRSGPNHSAKYNPILFSIYVSVIGVQGLDIGKHWIDVTRLLPPALEDLEGEKGSVRWTTTFKLSGKANGALLHVSFCFLTMKNGLAKLGQFEVPKLLNLIQNRSNAAKITAGFGTTSTEMAQPVRGVLSSLNYGSVGPAHSVDERICQEVLLNPSLELSQSIDFLYQKLDEGDLCGSAEVDFEFLEQLSLEPDTKLESEKETDRDYSETEFTVVDCGIEINNEKQCKFDEVADKTICLVNNIHSKDLDAVVNDDNSPLSIESILDWLDLPSEHKPVAHSVGKEPSSFVSKLQEQDNHTDAKASYTESKILKKSSSLDDVTDSVISDFLGMLGLECGSFRHSVCEPESPRELLLRQFEEEALISCNSIFYCDTPGERSNYGSCDLSGSGLSNYNESFDFASSNQFREQHQGASQLRNRRKGQILENLETEVQTQTWGMDEDIQDYPHYCAAGFGSPIELPPDDPLKLPPLDEGFDSFIRLKGDGFLRLMNPAVIKDCRDEGKLIIQLSRPVVLPAEMGSNFMEILHRLASIGLDKLYMQISKLMSLEDINGKTIPQIETEAASRKPLLQDKLSIDHGSSDGKIEAGKFSGEWNYSEIGEDNVSPEELIYLAMDRIEVLSVEGLKIQSDMSNEDAPSQIASSSNHKSLVIREFPDSVNAQDRNSDIEALMDHSITLDEWLKLDSGFIDNEKNYHENVMKILEAHHAKSIAIDQRSTRDATVGKASSKEAGLFGNNLTVALMLQLRDPSRSLEPLGIPMLCLIQVKRTYIQELVLIEERTDEFNEAEGSYMYKLDDIHLLGVNSKPLNEHVWGTTAQRLSGCHWLLANGMGKTIDLPFSENKAMRWDQISIASPTSFHSGLGSSEEPMAIAHMKDSATSAVNKSGNRQRSNVHRSAYFARREAAKVLRCVLQGDARRRAVGSIKSLVYSPSVRNKKGTFALVCQTLKYLLVIKEVCEATGIFSKKWKKQEELIYVIMYDILFGQAVSLVGDVEKFLIRQKDDLELALAKILVKKKVNSIEQLMALYEAPVAICNADVSKPCYVRVNTLRIDVCSASQELGEKYVVEKDDVVPHLLKLPSNSDLHEHRLVKNGSIFVQGKASSMVAAALDPKPGWEVLDACSAPGNKTVHLAALMKGKGKIIACELNEGRIRHIEVLHGDFVTLDPKDSAYSEIRAILLDPSCSGSGTATARLDHLLPSHGACGSASIDDPERLHKLAAFQTKALTHALSFPAVEKIIYSTCSTHQIENEDVVQSVLPLAESYGFQLVTPFPKWQRRGLPVFEGASNLLRTDPVEDKEGFFIALFRRQNILNSLEKSSNGRNKSSKVCHGSKSSIRGRIRSARIPPLHTGLFRKWMYGRRSWRRMTPKVSDTNQVQ 1783
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 53633051 53651450 - BLOR01455 Blo01g01455 55895

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01455 1783 Pfam 16S rRNA methyltransferase RsmB/F 1514 1712 IPR001678 GO:0008168
Blo01g01455 1783 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 658 1252 IPR039614 -
Blo01g01455 1783 Coils Coil 110 130 - -
Blo01g01455 1783 MobiDBLite consensus disorder prediction 309 330 - -
Blo01g01455 1783 CDD AdoMet_MTases 132 234 - -
Blo01g01455 1783 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 368 669 IPR039614 -
Blo01g01455 1783 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 2 368 669 IPR039823 -
Blo01g01455 1783 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 2 658 1252 IPR039823 -
Blo01g01455 1783 Gene3D Sun protein; domain 3 1440 1503 - -
Blo01g01455 1783 Gene3D Vaccinia Virus protein VP39 1505 1720 IPR029063 -
Blo01g01455 1783 PRINTS RNA (C5-cytosine) methyltransferase signature 1525 1535 IPR023267 GO:0001510
Blo01g01455 1783 PRINTS RNA (C5-cytosine) methyltransferase signature 1496 1510 IPR023267 GO:0001510
Blo01g01455 1783 PRINTS RNA (C5-cytosine) methyltransferase signature 1697 1714 IPR023267 GO:0001510
Blo01g01455 1783 PRINTS RNA (C5-cytosine) methyltransferase signature 1641 1657 IPR023267 GO:0001510
Blo01g01455 1783 PRINTS RNA (C5-cytosine) methyltransferase signature 1582 1594 IPR023267 GO:0001510
Blo01g01455 1783 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 1464 1714 IPR029063 -
Blo01g01455 1783 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 79 307 IPR029063 -
Blo01g01455 1783 CDD AdoMet_MTases 1524 1600 - -
Blo01g01455 1783 Pfam Mycolic acid cyclopropane synthetase 77 312 - -
Blo01g01455 1783 Gene3D Vaccinia Virus protein VP39 70 328 IPR029063 -
Blo01g01455 1783 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 1439 1715 IPR001678 GO:0008168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01455 K15264 NSUN5, WBSCR20, RCM1; 25S rRNA (cytosine2278-C5)-methyltransferase [EC:2.1.1.311] - jre:109020445 606.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01455 Blo-Chr1:53633051 Blo08g00357 Blo-Chr8:5640434 7.41E-32 dispersed
Blo01g00298 Blo-Chr1:3701909 Blo01g01455 Blo-Chr1:53633051 1.72E-11 transposed
Blo03g00505 Blo-Chr3:18793170 Blo01g01455 Blo-Chr1:53633051 2.83E-15 transposed
Blo01g01455 Blo-Chr1:53633051 Blo12g01021 Blo-Chr12:28141975 0 wgd
Blo01g01455 Blo-Chr1:53633051 Blo16g00971 Blo-Chr16:37962462 1.75E-146 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g124 Blo01g01455 . . . . . . Bma01g02203 . . . . Car09g00303 . . . Cpe06g00251 . . . . . . . Cla05g01855 Cam05g1978 Cec05g1991 Cco05g2049 Clacu05g1970 Cmu05g1852 Cre05g1977 . Cone7ag1601 . . Lsi04g01403 . . . . . . . . . . . . . Cmo09g00354 Cma09g00354 . . . . Cpe02g00278 Bhi09g03108 . . . Hepe01g1904 Mch11g0437 . . . . . . . . . . . Cme07g00198
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008710 0 4 1 1 0 1 1 1 1 1 1 1 2 1 0 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01455 Blo_Chr01 FPKM 8.428983 9.783489 9.465414 11.283571 1.616752 1.572538 2.151291 0.546115 0.430627 0.566828