Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01473 ATGTCATTTGTGAGCCGGACCTCTGGAAGGGTTCCCCAACTGCTCGCAGCGCGAGGGGCTCTCTCGCTTCACACAACTCTTCATTCCTTGTCCTCCGTCTCGACGAGCACACCGACGCCCTATGCTAAGGCACCTCCTCCGTCAGCTTCTTTACCTCCGGCCGGGCTCTCTAAGGCTGCAGAATATGTGATCTCGAAGGTTGACGACCTTATGAACTGGGCCCGCCGGGGTTCAATTTGGCCCATGACGTTTGGCCTTGCCTGTTGCGCTGTCGAGATGATGCATACCGGTGCTGCTCGCTATGATCTAGATCGTTTCGGTGTCATCTTCCGCCCTAGCCCTAGGCAGTCTGATTGTATGATTGTTGCTGGAACTCTCACCAACAAAATGGCTCCAGCTCTTCGCAAGGTTTATGATCAAATGCCGGAACCTCGGTGGGTTATCTCTATGGGAAGCTGTGCCAATGGGGGCGGATACTATCACTATTCCTACTCTGTTGTCAGAGGCTGTGACAGGATTGTCCCTGTTGATATCTATGTTCCTGGTTGTCCCCCTACTGCAGAGGCCTTGCTATATGGAATTCTTCAGCTGCAAAAGAAGATCAATAGGCGCAAGGACTTCCTCCATTGGTGGACCAAATACCTTTCTCAGGGTGCTGTTCCAGCCAGCTTATCTGCTACCTCCTTATTGGAGCATGTTATCAGAACTTCTCATGGTCGTATTTCAGTGGTTGTGTACGGAGACCAAGAAAAGCCAGCTCTTGTCACCTATCCTGATTTAGCCCTGAATTATATGTCATGCTTTCAAGGATTATTTTTCTGTCCAGAAGTTTGTTCCTTGTTGCTACACAACTTTTGCATTTATCATATCAGTCCACCTGGCCACGAGGTAATTAATATTCGCGAGCTATTACAGATGGGAGCGGCAACATTTGGTCTGAAAGATTCTGTTCTTTCAGCTGACGACTTGGCAGATCAGGTTGCAGAGGTTCTCAACTACTTTGGGCTCGGTTCGGTAATGTGTATGGGAGTTGTTGCCGGGGCTTATGTACTTACCCTGTTCGCTTTGAAGTACAGACATCGTGTTCTTGGTCTGATTCTTATTTCTCCTCTTTGCAAAGAACCCTCTTGGACAGAATGGTTGTACAATAAGGTACTGTTAAACTTGCTTTATTTTTATGGCATGTGTGGATTGGCAAAAGAGTTGTTGCTTAGGCGGTACTTCAGCAAGGGCATTTTCGGCTCTGTTCTGGCTCCAGAGTCGGACATAGTTCAGGCTTGCAGCCGATCACTCGACGAAAGGCAGAGTTTAAATGTCTGGCGGTTCCTTGAAGCAATGAATAGGAGAGTTGACATTACAGAGGGATTAAGAAAACTACAATGCCGATCACTAATATTTGTGGGGGATAGCTCACCGTTCCACTCTGATGCACTCTATATGACATCAAAGTTAGACAGACGATATAGTGCACTTGTGGAGGTGCAGGAATGTGGGTCGATGGTAACAGAGGAACATCCTCACGCAATGTTGATACCGATGGAGTACTTCTGCATGGGTTACGGCTGGTTCAGGCCATCTCAAGTAAGTCTTAGTCCTAGAAGCCCCCTCAGCCCTTCTTGCATTGCTCCTGAGCTTCTTTCACCCGAAAGTATGGGCTTGAAGTTGAAACCGATAAAAACGAGAATATCGTCGTGA 1695 47.85 MSFVSRTSGRVPQLLAARGALSLHTTLHSLSSVSTSTPTPYAKAPPPSASLPPAGLSKAAEYVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGVIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKINRRKDFLHWWTKYLSQGAVPASLSATSLLEHVIRTSHGRISVVVYGDQEKPALVTYPDLALNYMSCFQGLFFCPEVCSLLLHNFCIYHISPPGHEVINIRELLQMGAATFGLKDSVLSADDLADQVAEVLNYFGLGSVMCMGVVAGAYVLTLFALKYRHRVLGLILISPLCKEPSWTEWLYNKVLLNLLYFYGMCGLAKELLLRRYFSKGIFGSVLAPESDIVQACSRSLDERQSLNVWRFLEAMNRRVDITEGLRKLQCRSLIFVGDSSPFHSDALYMTSKLDRRYSALVEVQECGSMVTEEHPHAMLIPMEYFCMGYGWFRPSQVSLSPRSPLSPSCIAPELLSPESMGLKLKPIKTRISS 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 53960017 53970019 - BLOR01473 Blo01g01473 55913

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01473 564 SUPERFAMILY HydA/Nqo6-like 61 207 - -
Blo01g01473 564 Hamap NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 54 202 IPR006138 GO:0008137|GO:0048038|GO:0051539
Blo01g01473 564 ProSitePatterns Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 169 185 IPR006138 GO:0008137|GO:0048038|GO:0051539
Blo01g01473 564 PANTHER PROTEIN NDL2 229 563 - -
Blo01g01473 564 Gene3D alpha/beta hydrolase 222 519 IPR029058 -
Blo01g01473 564 TIGRFAM nuoB_fam: NADH-quinone oxidoreductase, B subunit 63 203 IPR006138 GO:0008137|GO:0048038|GO:0051539
Blo01g01473 564 Gene3D - 59 213 - -
Blo01g01473 564 Pfam Ndr family 231 523 IPR004142 -
Blo01g01473 564 PANTHER N-MYC DOWNSTREAM REGULATED 229 563 IPR004142 -
Blo01g01473 564 Pfam NADH ubiquinone oxidoreductase, 20 Kd subunit 88 197 IPR006137 GO:0051536
Blo01g01473 564 SUPERFAMILY alpha/beta-Hydrolases 233 509 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01473 - - - gmx:100804729 545.043
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00542 Blo-Chr1:5970533 Blo01g01473 Blo-Chr1:53960017 1.60E-169 dispersed
Blo01g01473 Blo-Chr1:53960017 Blo18g00575 Blo-Chr18:8293597 7.19E-112 dispersed
Blo01g01473 Blo-Chr1:53960017 Blo12g01010 Blo-Chr12:28067473 2.79E-148 wgd
Blo01g01473 Blo-Chr1:53960017 Blo16g00990 Blo-Chr16:38205651 1.10E-170 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g66 Blo01g01473 . Bda01g00613 . . Bpe02g00482 . Bma01g02219 Cmo05g00108 Cmo12g00573 . Cma05g00101 . Car12g00581 Sed08g1762 Cpe07g00554 . Bhi04g00498 Tan02g1646 . . Hepe08g1384 . Lcy13g2178 . . . . . . . Cone4ag1654 Cone7ag1297 Cone17ag0920 Cone20ag0263 . . . . . . . . . . . . . . . . Cma12g00632 . Car05g00087 Cpe11g00081 . . . . . . . . . . . . . . . Lsi08g01576 Csa02g01844 Chy03g01639 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000907 5 5 3 4 3 2 4 2 2 1 2 2 3 2 2 4 2 7 4 2 2 2 2 2 2 2 2 4 5 3 87
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01473 Blo_Chr01 FPKM 6.557838 7.605134 1.268702 0.94131 0.825836 0.481613 0.685192 0.822549 0.813987 0.828479