Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01479 ATGGAGGAATACAATCAGCTAAGCGAGAATTCGAATCCCCGTGGAAATTTCTTGTACACCTCAGCTGTTCTCCCCGGAAATTCTTCTCCTTCTAATTATGGAAGATCGACAACTGGTGGCTCAAACCTGAGCTCTCGACCAACCCAGATGGCCATTAATACCTTTCATGGCGACTGTTTTCAGTCTGATCCTATCGTCAAGAGTGAAGCGTCCACTTCGATGCATAATGTTCAGAAATTTCACTATCCATCGATAAGAGGCCATCAAACTTCGGTTCAAAGGAATGATGAAGGGTCTAATGATGTCGAGGCTATAAAGGCTAAGATCATTGCCCATCCCCAGTATTCTAACCTTTTACAAGCTTATATGGATTGTCAAAAGGTGGGAGCTCCGCCCGAAGTGACTGCAAGGCTGGCTGAGGCTCGCCGGGAGTTTGAAGCACGACAGCGATCGGCTTCTAGGGATTATCCAAAAGATCCCGAACTTGATCAGTTCATGGAAGCGTATTACGATATGCTAGTTAAGTATCGGGAAGAGATTACGAGGCCAATCCAGGAAGCAATGGATTTCATGAATCGGATTGAATCTCAACTCAATTCGCTCTGTAATGGACCTGTACGGATATTCGCCTCCGATGACAAGTTCGTCGAGGGTCTTGGCTCATCCGAGGACGAACAGGAGAACAGCGGAGGGGAAATGGAGCTTCCAGAGATTGATCCGAGAGCCGAAGATCGAGAGCTGAAGAATCACCTTCTGAGGAAGTATAGTGGTTATTTAAGCAGTCTCAAGCAAGAACTTTCGAAGAAAAAAAAGAAAGGAAAACTACCCAAAGATGCCAGGCAAAAGCTACTCAGCTGGTGGGAGTTGCATTACAAATGGCCATACCCATCGGAGACGGAGAAGGTGGCGCTGGCTGAGTCGACTGGGTTGGACCAGAAGCAAATAAACAATTGGTTCATAAATCAAAGAAAGAGACACTGGAAACCTTCTGAAGATATGCAATTTATGGTGATGGATGGTCTTCATCCTCCCAATGGAGCTCTCTATATGGACTCCCACTACATTGCTGATGGCCATTACCGTCTCGGACCGTGA 1095 46.3 MEEYNQLSENSNPRGNFLYTSAVLPGNSSPSNYGRSTTGGSNLSSRPTQMAINTFHGDCFQSDPIVKSEASTSMHNVQKFHYPSIRGHQTSVQRNDEGSNDVEAIKAKIIAHPQYSNLLQAYMDCQKVGAPPEVTARLAEARREFEARQRSASRDYPKDPELDQFMEAYYDMLVKYREEITRPIQEAMDFMNRIESQLNSLCNGPVRIFASDDKFVEGLGSSEDEQENSGGEMELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLSWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPPNGALYMDSHYIADGHYRLGP 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54145214 54147852 + BLOR01479 Blo01g01479 55919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01479 364 Pfam KNOX2 domain 158 202 IPR005541 GO:0003677|GO:0005634
Blo01g01479 364 SMART ELK_2 246 267 IPR005539 GO:0003677
Blo01g01479 364 Gene3D - 271 333 - -
Blo01g01479 364 MobiDBLite consensus disorder prediction 28 47 - -
Blo01g01479 364 MobiDBLite consensus disorder prediction 1 23 - -
Blo01g01479 364 Pfam Homeobox KN domain 286 325 IPR008422 GO:0003677|GO:0006355
Blo01g01479 364 ProSiteProfiles ELK domain profile. 246 266 IPR005539 GO:0003677
Blo01g01479 364 ProSitePatterns 'Homeobox' domain signature. 304 327 IPR017970 GO:0000981|GO:0006355
Blo01g01479 364 SMART KNOX1_2 103 147 IPR005540 GO:0003677|GO:0005634
Blo01g01479 364 MobiDBLite consensus disorder prediction 219 240 - -
Blo01g01479 364 SUPERFAMILY Homeodomain-like 267 343 IPR009057 -
Blo01g01479 364 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 356 - -
Blo01g01479 364 ProSiteProfiles 'Homeobox' domain profile. 266 329 IPR001356 GO:0003677
Blo01g01479 364 SMART KNOX2_2 152 203 IPR005541 GO:0003677|GO:0005634
Blo01g01479 364 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 1 356 - -
Blo01g01479 364 Pfam ELK domain 246 267 IPR005539 GO:0003677
Blo01g01479 364 CDD homeodomain 278 330 IPR001356 GO:0003677
Blo01g01479 364 Pfam KNOX1 domain 104 146 IPR005540 GO:0003677|GO:0005634
Blo01g01479 364 SMART HOX_1 268 333 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo01g01479 Blo12g01005 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01479 Blo-Chr1:54145214 Blo13g00994 Blo-Chr13:32344218 4.52E-89 dispersed
Blo11g00917 Blo-Chr11:19138509 Blo01g01479 Blo-Chr1:54145214 5.26E-69 transposed
Blo13g00130 Blo-Chr13:3823524 Blo01g01479 Blo-Chr1:54145214 9.80E-06 transposed
Blo15g00018 Blo-Chr15:126555 Blo01g01479 Blo-Chr1:54145214 1.83E-12 transposed
Blo16g01165 Blo-Chr16:40199397 Blo01g01479 Blo-Chr1:54145214 4.18E-68 transposed
Blo01g01479 Blo-Chr1:54145214 Blo12g01005 Blo-Chr12:28031041 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11922 PF03791 KNOX2 1.40E-24 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01479 - - pop:7467239 548.51