Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Blo01g01479 | ATGGAGGAATACAATCAGCTAAGCGAGAATTCGAATCCCCGTGGAAATTTCTTGTACACCTCAGCTGTTCTCCCCGGAAATTCTTCTCCTTCTAATTATGGAAGATCGACAACTGGTGGCTCAAACCTGAGCTCTCGACCAACCCAGATGGCCATTAATACCTTTCATGGCGACTGTTTTCAGTCTGATCCTATCGTCAAGAGTGAAGCGTCCACTTCGATGCATAATGTTCAGAAATTTCACTATCCATCGATAAGAGGCCATCAAACTTCGGTTCAAAGGAATGATGAAGGGTCTAATGATGTCGAGGCTATAAAGGCTAAGATCATTGCCCATCCCCAGTATTCTAACCTTTTACAAGCTTATATGGATTGTCAAAAGGTGGGAGCTCCGCCCGAAGTGACTGCAAGGCTGGCTGAGGCTCGCCGGGAGTTTGAAGCACGACAGCGATCGGCTTCTAGGGATTATCCAAAAGATCCCGAACTTGATCAGTTCATGGAAGCGTATTACGATATGCTAGTTAAGTATCGGGAAGAGATTACGAGGCCAATCCAGGAAGCAATGGATTTCATGAATCGGATTGAATCTCAACTCAATTCGCTCTGTAATGGACCTGTACGGATATTCGCCTCCGATGACAAGTTCGTCGAGGGTCTTGGCTCATCCGAGGACGAACAGGAGAACAGCGGAGGGGAAATGGAGCTTCCAGAGATTGATCCGAGAGCCGAAGATCGAGAGCTGAAGAATCACCTTCTGAGGAAGTATAGTGGTTATTTAAGCAGTCTCAAGCAAGAACTTTCGAAGAAAAAAAAGAAAGGAAAACTACCCAAAGATGCCAGGCAAAAGCTACTCAGCTGGTGGGAGTTGCATTACAAATGGCCATACCCATCGGAGACGGAGAAGGTGGCGCTGGCTGAGTCGACTGGGTTGGACCAGAAGCAAATAAACAATTGGTTCATAAATCAAAGAAAGAGACACTGGAAACCTTCTGAAGATATGCAATTTATGGTGATGGATGGTCTTCATCCTCCCAATGGAGCTCTCTATATGGACTCCCACTACATTGCTGATGGCCATTACCGTCTCGGACCGTGA | 1095 | 46.3 | MEEYNQLSENSNPRGNFLYTSAVLPGNSSPSNYGRSTTGGSNLSSRPTQMAINTFHGDCFQSDPIVKSEASTSMHNVQKFHYPSIRGHQTSVQRNDEGSNDVEAIKAKIIAHPQYSNLLQAYMDCQKVGAPPEVTARLAEARREFEARQRSASRDYPKDPELDQFMEAYYDMLVKYREEITRPIQEAMDFMNRIESQLNSLCNGPVRIFASDDKFVEGLGSSEDEQENSGGEMELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLSWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPPNGALYMDSHYIADGHYRLGP | 364 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 54145214 | 54147852 | + | BLOR01479 | Blo01g01479 | 55919 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Blo01g01479 | 364 | Pfam | KNOX2 domain | 158 | 202 | IPR005541 | GO:0003677|GO:0005634 | |
Blo01g01479 | 364 | SMART | ELK_2 | 246 | 267 | IPR005539 | GO:0003677 | |
Blo01g01479 | 364 | Gene3D | - | 271 | 333 | - | - | |
Blo01g01479 | 364 | MobiDBLite | consensus disorder prediction | 28 | 47 | - | - | |
Blo01g01479 | 364 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Blo01g01479 | 364 | Pfam | Homeobox KN domain | 286 | 325 | IPR008422 | GO:0003677|GO:0006355 | |
Blo01g01479 | 364 | ProSiteProfiles | ELK domain profile. | 246 | 266 | IPR005539 | GO:0003677 | |
Blo01g01479 | 364 | ProSitePatterns | 'Homeobox' domain signature. | 304 | 327 | IPR017970 | GO:0000981|GO:0006355 | |
Blo01g01479 | 364 | SMART | KNOX1_2 | 103 | 147 | IPR005540 | GO:0003677|GO:0005634 | |
Blo01g01479 | 364 | MobiDBLite | consensus disorder prediction | 219 | 240 | - | - | |
Blo01g01479 | 364 | SUPERFAMILY | Homeodomain-like | 267 | 343 | IPR009057 | - | |
Blo01g01479 | 364 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 1 | 356 | - | - | |
Blo01g01479 | 364 | ProSiteProfiles | 'Homeobox' domain profile. | 266 | 329 | IPR001356 | GO:0003677 | |
Blo01g01479 | 364 | SMART | KNOX2_2 | 152 | 203 | IPR005541 | GO:0003677|GO:0005634 | |
Blo01g01479 | 364 | PANTHER | HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 | 1 | 356 | - | - | |
Blo01g01479 | 364 | Pfam | ELK domain | 246 | 267 | IPR005539 | GO:0003677 | |
Blo01g01479 | 364 | CDD | homeodomain | 278 | 330 | IPR001356 | GO:0003677 | |
Blo01g01479 | 364 | Pfam | KNOX1 domain | 104 | 146 | IPR005540 | GO:0003677|GO:0005634 | |
Blo01g01479 | 364 | SMART | HOX_1 | 268 | 333 | IPR001356 | GO:0003677 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Blo01g01479 | Blo12g01005 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Blo01g01479 | Blo-Chr1:54145214 | Blo13g00994 | Blo-Chr13:32344218 | 4.52E-89 | dispersed | |
Blo11g00917 | Blo-Chr11:19138509 | Blo01g01479 | Blo-Chr1:54145214 | 5.26E-69 | transposed | |
Blo13g00130 | Blo-Chr13:3823524 | Blo01g01479 | Blo-Chr1:54145214 | 9.80E-06 | transposed | |
Blo15g00018 | Blo-Chr15:126555 | Blo01g01479 | Blo-Chr1:54145214 | 1.83E-12 | transposed | |
Blo16g01165 | Blo-Chr16:40199397 | Blo01g01479 | Blo-Chr1:54145214 | 4.18E-68 | transposed | |
Blo01g01479 | Blo-Chr1:54145214 | Blo12g01005 | Blo-Chr12:28031041 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11922 | PF03791 | KNOX2 | 1.40E-24 | No_clan | Blo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Blo01g01479 | - | - | pop:7467239 | 548.51 |