Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01480 ATGGGCTCCGATGGCATCTATACTGGTCTTGTTCTTGGACTGATCAATTCCATCAATTACCCCAAGGAAGAGAAATTTATCCAATCAATTCCCGAGATAAACAAGAATCCATCATCAAAATTTGACAACACTTTTCTCACACTAGCCCTCTCCGACGAGACCAACCGACCTGCTACAATCTCCGACGTTTATAAGCAACTTACCGGCGAACCATATGATATACTGCTGCAGGCTTCTTCTGCTAGCGCTGTATCATCGTTTTCAAACTCCTCCAGTTTCAAGCGCGATAGAGACTTCTGCGATAGTGATGAGATAGAAGCAGAGACCGAGGTAGGCATACAGCCAATCTCTTCTAAGGTCAGTGAGGAAGAAGAAGATGGCACTGGCAGTCCGAGAAAAAAACTTAGACTCACAAAAGATCAGTCCGCCATTTTAGAGTTCAGCTTCAAAGAGCATGCAACTCTAAACCACAAACAAAAACAAGACTTGGCAAGAAAGTTGAGTCTAAGCACAAGACAAGTGGAAGTCTGGTTTCAAAACAGGAGGGCGAGAACCAAGTTGAAGCAAACAGAAGAGAGCTGCGAGCTGCTGAAGAAATGCTGCGAATCACTAACAGAAGAAAACAAAAGGCTAAAGAAAGCGCTTCAAGACATGAAAACACTAAAATCAGCTCCTCATCCGCCATTTTACATGCAGCTCAAATCAGCAACTCTCTCCATTTGCCCTTCTTGCGAGGGACTTTGCAGCGTCGGCGATGGGTCATCTCCCACGAGCACTCTCTCAGGCACTCCAAACGTTGGTTAA 804 45.02 MGSDGIYTGLVLGLINSINYPKEEKFIQSIPEINKNPSSKFDNTFLTLALSDETNRPATISDVYKQLTGEPYDILLQASSASAVSSFSNSSSFKRDRDFCDSDEIEAETEVGIQPISSKVSEEEEDGTGSPRKKLRLTKDQSAILEFSFKEHATLNHKQKQDLARKLSLSTRQVEVWFQNRRARTKLKQTEESCELLKKCCESLTEENKRLKKALQDMKTLKSAPHPPFYMQLKSATLSICPSCEGLCSVGDGSSPTSTLSGTPNVG 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54162228 54163247 - BLOR01480 Blo01g01480 55920

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01480 267 Pfam Homeodomain 132 186 IPR001356 GO:0003677
Blo01g01480 267 PANTHER - 77 257 - -
Blo01g01480 267 CDD homeodomain 131 189 IPR001356 GO:0003677
Blo01g01480 267 MobiDBLite consensus disorder prediction 119 135 - -
Blo01g01480 267 SUPERFAMILY Homeodomain-like 122 189 IPR009057 -
Blo01g01480 267 SMART HOX_1 130 192 IPR001356 GO:0003677
Blo01g01480 267 Coils Coil 187 224 - -
Blo01g01480 267 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 77 257 - -
Blo01g01480 267 SMART halz 188 233 IPR003106 GO:0006355|GO:0043565
Blo01g01480 267 Gene3D - 125 195 - -
Blo01g01480 267 ProSiteProfiles 'Homeobox' domain profile. 128 188 IPR001356 GO:0003677
Blo01g01480 267 ProSitePatterns 'Homeobox' domain signature. 163 186 IPR017970 GO:0000981|GO:0006355
Blo01g01480 267 MobiDBLite consensus disorder prediction 112 135 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01480 K09338 HD-ZIP; homeobox-leucine zipper protein - jre:109008842 214.542
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g01480 Blo12g01004 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01480 Blo-Chr1:54162228 Blo06g00035 Blo-Chr6:723435 9.87E-59 dispersed
Blo01g01480 Blo-Chr1:54162228 Blo12g01004 Blo-Chr12:28027205 1.57E-131 wgd
Blo01g01480 Blo-Chr1:54162228 Blo04g01103 Blo-Chr4:17324118 6.80E-61 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g591 Blo01g01480 Blo12g01004 Bda01g00604 Bda03g00154 Bpe02g00472 Bpe04g00136 . . . . . Cma09g00321 . . . . . . . . . . . . . . . . . . . Cone4ag1641 . . . Lsi04g01446 Csa04g02512 . . . . . . . . . . Sed13g1841 . Cmo09g00319 . . . Car09g00270 . . Bhi09g03183 Tan01g4653 Cmetu07g0964 . Hepe01g1859 Mch11g0393 . Cla05g01809 Cam05g1931 Cec05g1944 Cco05g2006 Clacu05g1923 Cmu05g1805 Cre05g1931 . . Chy07g00219 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000625 3 3 4 3 4 3 4 3 3 3 3 3 5 4 3 4 3 5 4 3 3 3 3 3 3 3 3 6 4 1 102
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11923 PF00046 Homeodomain 1.30E-16 CL0123 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01480 Blo_Chr01 FPKM 60.17305 72.887352 65.999023 60.76746 94.406326 99.631973 85.972435 76.846481 78.566742 73.954201