Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01492 ATGACGAGGCTTCATCTATGCCTTATTTCCTCTTTTCTTCTTCTCTTAACGGCGACGGTAGCAGGTGCACTTTCTTCCTCCACTGTTGAGTTCCTTCCTGGTTTCAAAGGGCCTCTTCCTTTTCATCTTGAAACTGGATACGTGGGTGTCGGAGAGTCAGAGGATGTGCAGCTTTTTTATTACTTCGCTAAATCTGAGAAGAGCCCGGAGAACGACCCCCTTCTCATTTGGCTCACCGGAGGTCCTGCTTGCTCTGCCTGGTCCGGTCTAACTTTTGAAATCGGTCCATTAAAGTACGTTGTGAATCGGTTTAACGGGAGCTTGCCAACTTTGGAGCTGAACCCATATTCATGGACCAGGGAAGCGAGCATTATATTTTTAGATTCGCCAGTTGGGAGTGGTTTTTCGTATGCGAGGAAACCAGATGCTTTTCAGCCAGGAGACTTCAATCAAGTTCACCAGATTAATCTCTTCATCAAAAAGTGGTTGAGCGATCATCCAGAATTCATGTCAAATCCATTCTATGTGGCCGGAGATTCACATTCTGGTATCATAATTCCAGCCATCGGGCAAGAAATCTTGATCGGTGCGAATCTCTTTAATTTGCTTAATCGCTGCTACGATTCAGGAAACGAGCGAGGTGCTGAGCCATTGGTGAATCTTCAGGGATATTTACTTGGAAATCCACGAACTATTCCTAAATTTGAGGATAATTTCATAATCCCCTTTTGTCATGGAATGGGAATCATCTCGGATGAACTGTACGAGTCAGTAAAGAGGACTTGTAAAGGAGAGTTTGTAGATCCACATCCCAGCACTATAGAGTGTTTAAGGGATCTTGATGAAGCTGATAAGTGTATTTCTGGAATTAACAATCCACATGTTTTAGAACCTAAATGTCCTTTCGATTCTCCGAAGCCCCCAGAAATGTTGGGTCGAAGATCTCTGTATGACATCAATAATCACATCTCTGACCCCCCACCCGCCATTTCAATAATTTGCAGGAATTATGGATATGTCCTGTGTAGTTATTGGGCTAATGATCCTAAAGTTCGAAAGGCTCTTCACGTCCGAGAGGGAAGTATCGGAGAGTGGAAACGATGTAATCGCGAGATGGCTTACAACTACGAAATTCCGAGTAGTTTTCAGTATCATGTGAATCTTAGTGCCAAAGGAGTACGATCCTTAATCTACAGCGGTGATCATGACAAGTTAGTCCCGTTCTTGGCCACACAAGCTTGGATACGGCTTTTAAACTATTCCATCGATGAAGATTGGAGACCATGGATCGTCGGAGGCCAAGTTGCCGGGAACAGCTCTATTCATTGGAAGCCGTCCTCTATAGTTGCCCTTGCCACCAGCGCCGACGACTCTCAAGTCGCCGCTGCTCGTGAAGACGGTTCGCTCGAGATTTGGCTTGTGTCTCCCGGATCCGTGGGCTGGCACCATCAGCTGACAATTCATGGAAACCCTAATTCCAGGGTTTCATCTCTTATTTGGTGTCGCCCTGGTTGCAAAGGCATGGCTTATGGTCGCTTATTCTCGTCCAGCATTGATGGGTCAGTTTCGGAGTGGGATCTTAGTGATTTAAAGCAAAAGACTGTGTTAGATTCAATTGGTGTATCTATCTGGCAGATGGCTGTTGCTCCATCAGCTAGTCCGGGGCTCCATCCAGGGCCCAAGAGCCAAACTATGGAAAACGGGAGCGTAAAAGAAAATGATGGCAATTGTGAAGATTTTAGTGAAAGTGAAGATGAGTCCAAGTCAACTGACCCCCCTGATGGCCGTACATCTACTGAGAATATATGTGTAGCATTAGGTTGTGATGATGGTAGCATTCGACTGTACAGCATCTCTAACCTTGATGAGTTTTCTTATACCAAATCACTACCGAGGGTCAGTGGTCGTGTTTTAAGTGTTACTTGGAGTCCTGAGGCAGATATGATATATTCAGGCAGTAGTGATGGGTTTATTAGGTGCTGGGATGCGAAATCATGTCATGAGGTCTATAGGATAACAGTAGGACTTGGAGGTTTGGGGTCCGGATCTGAACTCTGTGTTTGGTCATTACTTTCCTTGAGATGTGGGACACTTGTAAGTGCTGACAGCACTGGAAGTGTTCAATTTTGGGACAGTCGACATGGAACTCTTCTTCAAGCACATTCTATTCACAAGGGCGATGTTAATGCGCTGGCAGCTGCTCCAAGTCAGAATAGGGTGTATTCTGCTGGTTCTGATGGACAGGTTGTTTTGTATAAGCTATCTAGTGAGACTGTGGGATCTAGTGATGATCTGTCTTCCTCTGAAGTGATGAAGAAATGGATCTATGTTGGTTATGTTAGAGCTCACACACACGATATTAGGGCTTTGACTGTGGCAGTACCAATCAGTCGAGATCCATTTCCCAAGGAAGAGGTTAAAAGAGTTCGTGGTAGAAAAAAGCCCATTGATTTTACATATGGTAAGTGGGCTCATTTGGGTGTTCCAATGCTAATATCAGGTGGTGATGACACAAAGCTCTTTGCTTATTCTGTGAAGGAGTTCACTAAATTTGCTCCTCATGATATTTGCCCGGCTCCTCAAAGAGTTCCAACACAACTTGTGCTTAATACAGTTTTCAATCAAGCACCATTACTACTTATCCAAGCGTCTCATTGGTTGGATATCCTATGTATTCGTCCAAGAAGCCATGCCCATCCTGAGATGGCTTGTGGAACTTCTGTCACTCATGCAAATGCTGACCTAGTCGCCCGAGTTAAGAGTAAGGGTTGTCGAAAGATAATTTGCAGCACCATTTCTAACTCAGGAAAGCTGCTTGCTTATTCTGATCATGCGAAACCCAGCCTATTTAAATTGAAGGGATCTAGAGCCAGCAAACATGGATATACTGTTAATAAGATCCAACTTCCTTGTGTACTGCCATTTGCTCATTCCATGGTTTTTAGCTTTGACTCTTCACGATTCATTATAGCGGGGCATGATAAATTGATATATGTTGTTGAAATGGGAAGCTTGGAAGTAATACATCGTTTCACACCATGCCAAGAACTAAAAGATGAAGAATTAACAGCCAATGAGCCTCCCATAACAAAAATGTTAGTCAGTTCAGATGGGCAATGGTTAGCTGCAATCAATTGTCCCGGGGATATTTACATATTTAACTTGGAGTTACTAAGGCAGCATTGGTTTATTGCAAGACTGGATGGTGCCTCTGTTACCGCTGGTGGGTTTCCTCAGTGGAACAACAATGTGCTTGTAGTCACGACCTCTTCGAATCAGGTATATGCATTTGATGTTGATGCCAAAAAGTTGGGAGATTGGTCACGTCGACATACAGATTCTCTTCCGAAGAGATTTCAAGAATTTCCAGGAGAAGTTATTGGTCTCTCATTCCCTCATTCCACAAGTTCTTCACCTGTTATTGTTTATAGTTCCAGGGCAATGTGTTTAATTGATTTCAGTTTATCTGTTGAACAAGATGACGAACCTATAAGCAGTCAGGATTTGCAAAATATTCCCATAAATGCGAAACTCAAACGTAAGTTGAGGGATTTGCAATCTGAGAATAAACTCTACGTTGCTTTTGGCCCCTGTATCACTGCAGTTTGTGGCCATTTGCTTGTGTACTGA 3630 43.66 MTRLHLCLISSFLLLLTATVAGALSSSTVEFLPGFKGPLPFHLETGYVGVGESEDVQLFYYFAKSEKSPENDPLLIWLTGGPACSAWSGLTFEIGPLKYVVNRFNGSLPTLELNPYSWTREASIIFLDSPVGSGFSYARKPDAFQPGDFNQVHQINLFIKKWLSDHPEFMSNPFYVAGDSHSGIIIPAIGQEILIGANLFNLLNRCYDSGNERGAEPLVNLQGYLLGNPRTIPKFEDNFIIPFCHGMGIISDELYESVKRTCKGEFVDPHPSTIECLRDLDEADKCISGINNPHVLEPKCPFDSPKPPEMLGRRSLYDINNHISDPPPAISIICRNYGYVLCSYWANDPKVRKALHVREGSIGEWKRCNREMAYNYEIPSSFQYHVNLSAKGVRSLIYSGDHDKLVPFLATQAWIRLLNYSIDEDWRPWIVGGQVAGNSSIHWKPSSIVALATSADDSQVAAAREDGSLEIWLVSPGSVGWHHQLTIHGNPNSRVSSLIWCRPGCKGMAYGRLFSSSIDGSVSEWDLSDLKQKTVLDSIGVSIWQMAVAPSASPGLHPGPKSQTMENGSVKENDGNCEDFSESEDESKSTDPPDGRTSTENICVALGCDDGSIRLYSISNLDEFSYTKSLPRVSGRVLSVTWSPEADMIYSGSSDGFIRCWDAKSCHEVYRITVGLGGLGSGSELCVWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSIHKGDVNALAAAPSQNRVYSAGSDGQVVLYKLSSETVGSSDDLSSSEVMKKWIYVGYVRAHTHDIRALTVAVPISRDPFPKEEVKRVRGRKKPIDFTYGKWAHLGVPMLISGGDDTKLFAYSVKEFTKFAPHDICPAPQRVPTQLVLNTVFNQAPLLLIQASHWLDILCIRPRSHAHPEMACGTSVTHANADLVARVKSKGCRKIICSTISNSGKLLAYSDHAKPSLFKLKGSRASKHGYTVNKIQLPCVLPFAHSMVFSFDSSRFIIAGHDKLIYVVEMGSLEVIHRFTPCQELKDEELTANEPPITKMLVSSDGQWLAAINCPGDIYIFNLELLRQHWFIARLDGASVTAGGFPQWNNNVLVVTTSSNQVYAFDVDAKKLGDWSRRHTDSLPKRFQEFPGEVIGLSFPHSTSSSPVIVYSSRAMCLIDFSLSVEQDDEPISSQDLQNIPINAKLKRKLRDLQSENKLYVAFGPCITAVCGHLLVY 1209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54420933 54432473 + BLOR01492 Blo01g01492 55932

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01492 1209 MobiDBLite consensus disorder prediction 552 598 - -
Blo01g01492 1209 SMART WD40_4 966 1001 IPR001680 GO:0005515
Blo01g01492 1209 SMART WD40_4 623 662 IPR001680 GO:0005515
Blo01g01492 1209 SMART WD40_4 714 753 IPR001680 GO:0005515
Blo01g01492 1209 SMART WD40_4 1015 1054 IPR001680 GO:0005515
Blo01g01492 1209 SMART WD40_4 673 711 IPR001680 GO:0005515
Blo01g01492 1209 SMART WD40_4 480 526 IPR001680 GO:0005515
Blo01g01492 1209 SMART WD40_4 529 617 IPR001680 GO:0005515
Blo01g01492 1209 SMART WD40_4 436 473 IPR001680 GO:0005515
Blo01g01492 1209 Gene3D - 448 674 IPR015943 GO:0005515
Blo01g01492 1209 MobiDBLite consensus disorder prediction 572 593 - -
Blo01g01492 1209 ProSiteProfiles Trp-Asp (WD) repeats profile. 721 762 IPR001680 GO:0005515
Blo01g01492 1209 MobiDBLite consensus disorder prediction 557 571 - -
Blo01g01492 1209 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 630 665 - -
Blo01g01492 1209 Pfam Serine carboxypeptidase 33 438 IPR001563 GO:0004185|GO:0006508
Blo01g01492 1209 SUPERFAMILY alpha/beta-Hydrolases 29 438 IPR029058 -
Blo01g01492 1209 Pfam WD domain, G-beta repeat 637 662 IPR001680 GO:0005515
Blo01g01492 1209 Gene3D - 675 859 IPR015943 GO:0005515
Blo01g01492 1209 PRINTS Carboxypeptidase C serine protease (S10) family signature 162 187 IPR001563 GO:0004185|GO:0006508
Blo01g01492 1209 PRINTS Carboxypeptidase C serine protease (S10) family signature 127 137 IPR001563 GO:0004185|GO:0006508
Blo01g01492 1209 PRINTS Carboxypeptidase C serine protease (S10) family signature 114 126 IPR001563 GO:0004185|GO:0006508
Blo01g01492 1209 SUPERFAMILY WD40 repeat-like 697 1099 IPR036322 GO:0005515
Blo01g01492 1209 ProSiteProfiles Trp-Asp (WD) repeats profile. 630 671 IPR001680 GO:0005515
Blo01g01492 1209 Gene3D - 334 447 - -
Blo01g01492 1209 PANTHER WD REPEAT-CONTAINING PROTEIN PCN 438 1192 IPR044622 GO:0010073|GO:0035266
Blo01g01492 1209 SUPERFAMILY WD40 repeat-like 441 758 IPR036322 GO:0005515
Blo01g01492 1209 Gene3D alpha/beta hydrolase 23 306 IPR029058 -
Blo01g01492 1209 Gene3D - 912 1154 IPR015943 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01492 K14548 UTP4, CIRH1A; U3 small nucleolar RNA-associated protein 4 - csv:101222880 1073.15
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g01492 Blo12g00991 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01492 Blo-Chr1:54420933 Blo14g00602 Blo-Chr14:10351731 2.03E-49 dispersed
Blo05g00468 Blo-Chr5:7170296 Blo01g01492 Blo-Chr1:54420933 1.65E-86 transposed
Blo17g00515 Blo-Chr17:8217155 Blo01g01492 Blo-Chr1:54420933 4.94E-86 transposed
Blo01g01492 Blo-Chr1:54420933 Blo12g00991 Blo-Chr12:27940639 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g629 Blo01g01492 Blo12g00991 Bda01g00594 Bda03g00168 Bpe02g00456 Bpe04g00153 Bma04g00142 Bma01g02244 . . Cma01g01778 Cma09g00298 Car01g01386 . . Cpe06g00208 . . . . . . . . . . . . . . . Cone4ag1622 Cone7ag1326 . . Lsi04g01475 Csa04g02488 . . . . . . . . . . Sed01g2728 Cmo01g01836 Cmo09g00290 . . . Car09g00251 . Cpe02g00228 Bhi09g03217 Tan01g4681 Cmetu07g0687 . Hepe01g1838 Mch11g0372 . Cla05g02114 Cam05g2266 Cec05g2287 Cco05g2329 Clacu05g2263 Cmu05g2126 Cre05g2249 . . Chy07g00197 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005030 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01492 Blo_Chr01 FPKM 5.426318 6.563784 7.091623 6.309885 11.685936 10.164924 11.723605 5.755291 4.948126 5.54495