Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01497 ATGGTCTCGGCGGAGCAACCTTTGAAGAAGAGAAAGCTGTACGAGTTCGCTTCGGAATCACGAGAGCCGGATCCGTCGTCGAAAACCCTGGTGGAGAATCAGAGTTCTGTAGCTCCTCCTTCCACTCCCCCGCCGTTATCCCATGATGAAATTTTGGCCAAACGGAGGAATAGAGATGAGATTCGAAGTGTGTATGAATGTTATAAGCGAATTAGATTTTCTATTTCTCAGAAAAGAAACGGTGCTATGGCCCCTGATATTGAGCAAGCTTATCTCTCTCTTATTTCGGCTTCAAGGGGGTGTACAAGTGTACAGAGAATTGTGGCAGATCTTATTCCACGATATGCATCATACTGTCCAACTGCACTGGAAGCGGCAGTTAAAGTCATTATTAATATGCATGGTTGGAGCTTGACCAAGATAAATAAGGGAGAGGATAATGATGGTGTGGCATTTGATATTGCTAGAGCTTGTACTGTTGGTCTGGCTGATATTTGTTGTGCTGTTTCTTCTGAGGTGCCAGCATCATCTGTCATTCAAGGCATTTGCTCTACTGTCTTTCAAAATGCACTCACCTTTTTTGTCTCCCCTTTCGAAGGAAAGGATATCTTTCAGATTGTTGGTAAAGATGTTTTGAAGATTCAAGATTCTGCTGATATCTATGCTGAGCTGAAAGAAAAGTATGCGGATGAAGACGAAACCTCATTGGTTAAGCTCTCCAAGTTTAGTGCGCTCAGTCTACTATGGGTTTTTTTTCGTTGTCCTAAAAACTTGCTGGCAGCCTGTTTTGAGCTTTTCAATTTGACGACAGATGCAGCCCACAAAGAAGGATTATATCTTCTTACTCAACTGACATGCAAACTTGACAATGCTGGAGCTCTTCAATTGGGTAAAAGAAGTGATAGAAGTGGTGGGCCTGAACCCATACATGATTCTATTTTGGCAAACAAGAGGAACTGTGAAGTGGTTGAGGAGCAAGTATCTGAAAACTGCTTGTTGGGCATGGTTCTTGGAAAAGATCGAATATTTCAAAGCTGGGTGTTGTCAAAATACAAGAAGCTATGTTCATTGTCTTCTTTCCATGGTTTATCAGATATTCAATCTGCGATGGACACAATTTTTTCATCATTTTATGAGGCAATGGAAGTAAAAGATAGTCACAACTCGAGTGGTGAAGATCATTCTGATTTATCCTCATATGTGGTTTCGGATAAACATCTTTCTGTAGCCTCTCGTGATAATGTTTTCCACACAAATGCAGTAGGATCAACTTGTTACAGTGGTGGTTCGAGGCCCAAAGTTGAAACTCATGAGCCCAGTGACTTGTTTCATGGCAGGTTTACCATGCCCAAGGACCTGTTACTGGACCAAACACCTTCACCCTTGACAAGAATCCCATTGGACACAGAGAAGAATTCACTTGAAAGTAGAAATCAACTAATAAATGTTGAGAAGAATCAAGTTACAAGTGCTGATCACACCTTTCCAGCTGTAAGATCTTCTAGTGGTGGCTTGGATAACGATTTTACATCTCCTAAACATCATTTTGCAATTCCCAATACTCCCACCTCTACTCATGCTTTGTGGTACTCTGATGGGGATCCATCAGCCATGGATATCTTCTCTGCTTCTAAACAGCTCTGGGTGGGGTTTTTTGGCACTGATGTGCCTGAAGCTCATATAAGGTTTCAGTTTGACAGATTTGGCCCCATTGAAGATTTCTTCTTTTTCCCGGTCAAAGGATTTGCTTTAGTTGAGTACATCCACATCATTGATGCTATTAGGGCAAGGGAACATAATCGTGGACAGTTTCAATGGTGTATTAAGTTCATGGATGTGGGTGTAGGGACTAGGGGTGCTCTCAATGGTGTTGCTGTTGGTTCTAGTCCACATATTTATATTGGAAATGTTTCTGGCCAGTGGGAGAAGGATGAAATTTTGCATGAAGCAAGGAAAGTACTCAACAAAATTCCGTATCTGGTCACTGATCTTAGCAGTGAAGGTGCTTTGCTGATGGAATCTGAAACTCCTGAGGAAGCTGTTGCTGTGATGACACATCTAAGACAGTATCGTAAAGAAAAGGGTTACCATTGTCCACCTTTAAATGCTAGACCAAGTAATGCTGCAATGTCTTATGTGGATTGTGGAAGAATAACATGTGCTTCAAGTCTTAGCATCAGAAGTAACAATCCAGGATACACATGTAATGGTGGAATTGGATCACCTCGTACTCCCATTGTGCCAGAGAGCCCTAGTGGAAGCTCCAGAGCTAGGATGTCTGATTTACAGTCCCTTCTTTTTTCTCTACGTGTGAAATATAACATCAATCAGAATTCTGGTTATTTTGACAACTATATGTCTGGCAATTGCAATTATAACACCAAGAGGGAAGAAGATAAAGTACCATCTAGTACTCTCTGGATCAGTTTTCCTAATGTAAACTTCCCTTTTGTCACAGATGATGAGTTAATGGCAATTTGCAATCTTGCTATTGCTAATACAGGATCTGTGGTAAGATTTGCTCGATCAAATATGCAGTCAGGTTGTGGTTGGTTTGTTGAGTGCAATAGTGTAGATGCTGCAATCACTGTATTGAAGAATCTCCGGGGTTGTCCTGGAATTTTCCTTCGGCTAGAATTCAGTCATCCTGGAAATCAGCATACCACACCATTACAAATAAAACATGAAAATCGCCCCATGGAGCTTGTGTCTCCCAGGATAAATTATGAAAATTCTGGAAGTGCTTCACAAAGTGGACATTCCTACCAGCCAAACTGGGCTGTTTCCAGTTGTTCCGATGTGTCTGAAGTCCGGGCACATTCTCAAGGAGGTGGCCATGTTCCCACTGGTCCTGACCAAATTTGGACGCATAGGAAACCTGAAATGGATCTTCATCCACCACCAGGGAGCATATCTTCTGTACCAATGGTAACACAAGGCCCTCCTCTGCCACCTCCACAACAAATTCAATCTTCTCCATTTATGCGACCTCTTTATCCCCCTCCAAGTACTCCTTGGGCTGTGAGGGGTTTGAATCCTCATTTGCCTCTGAACCCTATATCACCAGGTGCAATGCCTAATACTTTTCCATGTCACACTGTTGCAGCTCCTTTTGTACCTGCTTCCGTGACACCGCTTGCTCAGATTCAGGGAACTCCAGTGCATCAATTTGACAATATGTTTACCCAGCCTGTTGCGCCACCACGATTATCATCTTTACCACCACCTCAGCCTGAGCTGCCACCTCCTTCTCCACCACCCCCCTTACCCCAATCAGAGCCACCTCCCCTGCCACCTCCACCCAGTTCTCCCCCTCCCCTGCCACCTCCACCAGCTGTAGAATCATTGCAAATGGAAAGTTCTATCCACTCGATGCAGTACCAATGGCAAGGCACACTCTGTAAAAGTGGAGTTCATTACTGCACAATATATGCACACAGAGTGGATTCAGAAATTTGCAAATATTCAAATTCCATTTCTGAGCCAACTGAATGGCCAGTGAAATTAGATATGACCAAACGCACAGATTTTCGGCAGGTGAAGTCAACATTTTCTAGTGCTCCACCACATAAAAGGGAGGTGTGTCAGCTGATTCCGTCTTCTGCAGGGGACAATAAAGGCGCTGTTGGCAAATTACTCTCAACGATCAGCATGGAATCGCGGCCTAAGAAATTGAAGTCAAAGCGTCGGAAGACAACGGTGGAAGCCATTGAACCCGTTCAAACTGCGGAAGTGGAAGAAAACGCCGACCTTGAAGAAGAATTATTCTGGAACGCTAATTGCAAAACACGGTATTTAGAAGATATACAACATCGTAGAATTATTGTGTCCAAAATAGTAGATTTGGACTCTTTCGCAGAAATGGGAATTGATCGTATGCTTGAAGCTGCTAGATTAGCTGGGTTGCGCAAGTTGAGGGGCAGTTACTGCGAGAGAGTTATAAGATTGTTTTACGCAAATTTGCGAATATCCACTAAACCATTAGAGGTGCGGATGTACGTTTTTGGAAGGGAGTTGAGATTCACTTCCAATGATGTAAACATGATGCTTGGATGTGCACTGGATGAGCCAAGCAAGGAATATTATCATATGGCTCGGGAGCCACCATTTGTAAAACAAAGAGGTGGGTTAGCGGTGCTTAGATTGTTGCACCAGGATCCCGAGGTTGTCGAGTACAGCAAGCCAAAGGGAAAGGAGTTGAATGCCTTCACCCGATTAATCCACTTGATGATGACGTACACCATTTTGCCTCGAAATGGGCATCGTGACCTTGTTACCAGCATGGATCTCTATATGCTGGAGAAGGTGTTTACGGGAAAAAAGGTGGACATTGGATATATAATCGTGAGCCACATGCAAGAGGTGCTCAACAACTCGGCGAAGTCCCTGCCGTACAACTGGCTAATCCAGAGGATCGTTGAGCAGTTTGGGGTCCCCATCCCGGAGAACGAGCCAAGAATTGCCTCCTCGGTCAATGACATGTACAACAATTCATTATTGGACCGAATGGGTATCACCCAAACAGAAGGTGAATGGTTCCACAAGGGGAAGAAGGGAGCAGCACATCCACCCTTCTTAGAGCCTTCGCATTCAGTCCCTTCGCATGCACTACCGCCTCCTCCTCAGTCATCTCACTTTAGTTCGATACCTGATGAGACGCTCAACTGGATGAGAAAAATGGAGGGCTCCATAATATGTCCATGA 4704 43.84 MVSAEQPLKKRKLYEFASESREPDPSSKTLVENQSSVAPPSTPPPLSHDEILAKRRNRDEIRSVYECYKRIRFSISQKRNGAMAPDIEQAYLSLISASRGCTSVQRIVADLIPRYASYCPTALEAAVKVIINMHGWSLTKINKGEDNDGVAFDIARACTVGLADICCAVSSEVPASSVIQGICSTVFQNALTFFVSPFEGKDIFQIVGKDVLKIQDSADIYAELKEKYADEDETSLVKLSKFSALSLLWVFFRCPKNLLAACFELFNLTTDAAHKEGLYLLTQLTCKLDNAGALQLGKRSDRSGGPEPIHDSILANKRNCEVVEEQVSENCLLGMVLGKDRIFQSWVLSKYKKLCSLSSFHGLSDIQSAMDTIFSSFYEAMEVKDSHNSSGEDHSDLSSYVVSDKHLSVASRDNVFHTNAVGSTCYSGGSRPKVETHEPSDLFHGRFTMPKDLLLDQTPSPLTRIPLDTEKNSLESRNQLINVEKNQVTSADHTFPAVRSSSGGLDNDFTSPKHHFAIPNTPTSTHALWYSDGDPSAMDIFSASKQLWVGFFGTDVPEAHIRFQFDRFGPIEDFFFFPVKGFALVEYIHIIDAIRAREHNRGQFQWCIKFMDVGVGTRGALNGVAVGSSPHIYIGNVSGQWEKDEILHEARKVLNKIPYLVTDLSSEGALLMESETPEEAVAVMTHLRQYRKEKGYHCPPLNARPSNAAMSYVDCGRITCASSLSIRSNNPGYTCNGGIGSPRTPIVPESPSGSSRARMSDLQSLLFSLRVKYNINQNSGYFDNYMSGNCNYNTKREEDKVPSSTLWISFPNVNFPFVTDDELMAICNLAIANTGSVVRFARSNMQSGCGWFVECNSVDAAITVLKNLRGCPGIFLRLEFSHPGNQHTTPLQIKHENRPMELVSPRINYENSGSASQSGHSYQPNWAVSSCSDVSEVRAHSQGGGHVPTGPDQIWTHRKPEMDLHPPPGSISSVPMVTQGPPLPPPQQIQSSPFMRPLYPPPSTPWAVRGLNPHLPLNPISPGAMPNTFPCHTVAAPFVPASVTPLAQIQGTPVHQFDNMFTQPVAPPRLSSLPPPQPELPPPSPPPPLPQSEPPPLPPPPSSPPPLPPPPAVESLQMESSIHSMQYQWQGTLCKSGVHYCTIYAHRVDSEICKYSNSISEPTEWPVKLDMTKRTDFRQVKSTFSSAPPHKREVCQLIPSSAGDNKGAVGKLLSTISMESRPKKLKSKRRKTTVEAIEPVQTAEVEENADLEEELFWNANCKTRYLEDIQHRRIIVSKIVDLDSFAEMGIDRMLEAARLAGLRKLRGSYCERVIRLFYANLRISTKPLEVRMYVFGRELRFTSNDVNMMLGCALDEPSKEYYHMAREPPFVKQRGGLAVLRLLHQDPEVVEYSKPKGKELNAFTRLIHLMMTYTILPRNGHRDLVTSMDLYMLEKVFTGKKVDIGYIIVSHMQEVLNNSAKSLPYNWLIQRIVEQFGVPIPENEPRIASSVNDMYNNSLLDRMGITQTEGEWFHKGKKGAAHPPFLEPSHSVPSHALPPPPQSSHFSSIPDETLNWMRKMEGSIICP 1567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54494592 54504841 - BLOR01497 Blo01g01497 55937

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01497 1567 Pfam Putative plant transposon protein 1306 1479 IPR046796 -
Blo01g01497 1567 PANTHER NUCLEIC ACID BINDING PROTEIN 1 1207 - -
Blo01g01497 1567 MobiDBLite consensus disorder prediction 1068 1113 - -
Blo01g01497 1567 Gene3D - 536 618 IPR012677 -
Blo01g01497 1567 MobiDBLite consensus disorder prediction 1523 1549 - -
Blo01g01497 1567 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 ASC-1 COMPLEX SUBUNIT P100 1 1207 - -
Blo01g01497 1567 CDD RRM3_Spen 547 616 - -
Blo01g01497 1567 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 545 639 IPR000504 GO:0003723
Blo01g01497 1567 SUPERFAMILY RNA-binding domain, RBD 531 604 IPR035979 GO:0003676
Blo01g01497 1567 MobiDBLite consensus disorder prediction 937 959 - -
Blo01g01497 1567 MobiDBLite consensus disorder prediction 8 26 - -
Blo01g01497 1567 MobiDBLite consensus disorder prediction 1 49 - -
Blo01g01497 1567 MobiDBLite consensus disorder prediction 1059 1114 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01497 K18667 ASCC2; activating signal cointegrator complex subunit 2 - qsu:112027163 1298.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01497 Blo-Chr1:54494592 Blo19g00213 Blo-Chr19:10612923 0 dispersed
Blo06g00319 Blo-Chr6:18233846 Blo01g01497 Blo-Chr1:54494592 5.53E-174 dispersed
Blo06g00626 Blo-Chr6:29214180 Blo01g01497 Blo-Chr1:54494592 2.15E-16 dispersed
Blo01g01497 Blo-Chr1:54494592 Blo03g01271 Blo-Chr3:39013864 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g658 Blo01g01497 . Bda01g00588 . Bpe02g00450 . . . . . Cma01g01791 . Car01g01397 . . . . . . . . . . . . . . . . . . Cone4ag1610 Cone7ag1342 . . Lsi04g01491 Csa04g02473 . . . . . . . . . . Sed01g2712 Cmo01g01849 . . . . . . . Bhi09g03234 Tan01g4701 Cmetu07g2077 . Hepe01g1824 . . . . . . . . . . . Chy07g00185 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002598 2 3 2 1 2 1 2 1 1 2 1 1 2 1 2 3 1 4 2 1 2 2 2 2 2 1 1 3 7 2 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01497 Blo_Chr01 FPKM 21.249386 23.829912 9.863927 10.20351 9.182691 8.50142 8.671294 8.667641 8.251565 7.779461