Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01504 ATGGAGAATCAGGGATACCCATACTCATATCAAACCTTTTCTTTTGAAGATCCTTCTTGTGGGTCGTCGGAATTTGATGGCGACCACGATCCTCGTTGGCTCCTTTCTCAGTATAATCAGCTGAGAAGTTCGAGAATGAATACTGTCCAAGATATCCATCTCGATCAAGCCCTGAATGCTTTCGCTTGCCTCAGTCTTTCGTCTGACAGTGACAGGATTCTATATTCCGGGCCTGATGGCCATTCCGTATTTGGAAGATACGATTCGAACCGGGTGAACGGCCGGTTCTACTATCCTTCTTGTGAGGAAGAGATAATCCGTCAAAGAAACGTTGAGCTGCAGAGAAAAAGATTTCACAATGCCGATGTTTCTAATATCGGGAACATTAGGCCACTAGATTATAGAGCGAGGGTTGATTATGAGGGATTGAATGGAGTAAGCCATGCATCCGGTACTGTCCAACAGCGTTCGATTAATGAAGGGCTTTTGGCTGATGAGAGGCGATGGTTGGTACGAGGAGATCGTGCGAACGGGGAGCTCTCCGTCATGCCGTTTACGAACCAGAATGGTTTACTACCTGATCTTTCTTGTCATTATAACGATGCGGTGGATCATTTAGGAAACTTTTCAAGTACTAGAAGGTCTGGAATGAATAATAGACATCCCCATTGGTTACAGGAGCCCTTGACTTATCTTTCTGTGGAATCTTTTCAAGGAAAAGTAGTCTTATTAGCAAAAGATCAATGCGGATGTCGATTCTTGCAGAAGAAATTGGAGGATGCGACGGAGGGAGAAATCAAAGCGATTTTCTCGGAGGTGATAGAACATGTTCGCGAATTGATGGTTGACCCATTTGGTAATTATGTTGCTCAGAAGCTTGTAGAGGTATGTGGGGAAGAACAGAGGACCCAGATTCTTTTGATGGTGACCAGAAGGGAATTAGAACTGGCTCGTATTTGCCTTGATATGCATGGAACTCGCTCTGTACAGAAACTATTGGAACATCTCACGACCCAAGAACAAATTTCGATAGTCATCTCAGCTGTCAGAGCTTGTGCGTATGCATTGACTACTGACATGAATGGTCATCATGTGATTCAGTATTGCTTAAAGCATTTCTCTGCCAAGGACAATATGTTTATTTTGAACGAGGTGGTGAATAACTGTTTCTTGATTGCTACCGATAAGAGTGGATGCTGTGTTCTGCAGCAATGTGTGGAATACTCCACCGGAGAAATTAGAGAGCGGCTCATCGATGAAATTTCAGCAAATGCACCGTATCTATCGGAAGATCGCTATGGGAACTATGTGGTCCAACGTCTACTTGAACTGAGGATACCACAGATAACTAAAAAAGTTGTAAGACAGCTCGAAGGACATTATCTGGTTCTGTCTTGCGACAAGTATGGTAGTAATGTCGTGGAGAAGTGCTTGTTAGAATCAGGAGAAGAAGAATCTACACTGATTATAAACGAGCTGCTATCAAGTCCACATGTTTCGACTTTGCTGCTTCATCCTTATGGAAACTATGTCATCCAATCTGCATTATCAGTGTCCAAGGATTTCACACGGTGCTCCCTACAAAATCTTATTCGGAGACATGTCTCGATGATGCGGGATAACATCCACTGGTGTTCCTCAAGATTCCTATCCTTGACGGCGGCCTATGATTCTTCCTTCGTATCTCTCGCCTCTAACTCTACTTGCCACTTGCGCGCCTTCGACGGAGATCTTTATCCAGGGCACCTCCAGGCGCTGAAGCGGCCGAACAGTCATACCGCTTGCATGAGGCTGCACGGCGAACTTCCTATCAACGGGTTCGGCTCCTTTGATCTTATGGATTTCAATCATCTAAGTAGGGTTTTTCCAGATGTTGAAATGGTTTTTAACAATTGGCAGAAATTGTCTCTGTTTCCAGAAAACTGCTTGTTTCATATCAACAGCTCCCTTTTGAAGCCTAACTTCACCGAATTAAAGGAGTTGACTGCACATGAACTCGATGTCAATATCTCACAGGTTCTTTTATTGATCTTCCCCACTAAGGGAAATGAATTCTACATAAGATGGACCATCTTGCCAGCAAAATCTGCTGACTGCATATCTAATTCCACTGCAAAGGGCATAATTATTCACTTAAAGGAGCATAGAATGCAGCTTCCTGAAAATTTTGGAAGTTATCAGTTGGTTGTATTGGATATTGAACCTCAGGTAAAGAAGTATGTTGGTTTCCTTTACAGGTTCCACTTTATGCGCTATGCAGTTCCATCTGGGAAATCGATCAATCTTACACTTGTCCAATGA 2301 43.33 MENQGYPYSYQTFSFEDPSCGSSEFDGDHDPRWLLSQYNQLRSSRMNTVQDIHLDQALNAFACLSLSSDSDRILYSGPDGHSVFGRYDSNRVNGRFYYPSCEEEIIRQRNVELQRKRFHNADVSNIGNIRPLDYRARVDYEGLNGVSHASGTVQQRSINEGLLADERRWLVRGDRANGELSVMPFTNQNGLLPDLSCHYNDAVDHLGNFSSTRRSGMNNRHPHWLQEPLTYLSVESFQGKVVLLAKDQCGCRFLQKKLEDATEGEIKAIFSEVIEHVRELMVDPFGNYVAQKLVEVCGEEQRTQILLMVTRRELELARICLDMHGTRSVQKLLEHLTTQEQISIVISAVRACAYALTTDMNGHHVIQYCLKHFSAKDNMFILNEVVNNCFLIATDKSGCCVLQQCVEYSTGEIRERLIDEISANAPYLSEDRYGNYVVQRLLELRIPQITKKVVRQLEGHYLVLSCDKYGSNVVEKCLLESGEEESTLIINELLSSPHVSTLLLHPYGNYVIQSALSVSKDFTRCSLQNLIRRHVSMMRDNIHWCSSRFLSLTAAYDSSFVSLASNSTCHLRAFDGDLYPGHLQALKRPNSHTACMRLHGELPINGFGSFDLMDFNHLSRVFPDVEMVFNNWQKLSLFPENCLFHINSSLLKPNFTELKELTAHELDVNISQVLLLIFPTKGNEFYIRWTILPAKSADCISNSTAKGIIIHLKEHRMQLPENFGSYQLVVLDIEPQVKKYVGFLYRFHFMRYAVPSGKSINLTLVQ 766
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54621951 54626933 - BLOR01504 Blo01g01504 55944

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01504 766 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 212 557 IPR033133 GO:0003723
Blo01g01504 766 ProSiteProfiles Pumilio RNA-binding repeat profile. 308 347 IPR001313 GO:0003723
Blo01g01504 766 ProSiteProfiles Pumilio RNA-binding repeat profile. 492 532 IPR001313 GO:0003723
Blo01g01504 766 ProSiteProfiles Pumilio RNA-binding repeat profile. 236 271 IPR001313 GO:0003723
Blo01g01504 766 ProSiteProfiles Pumilio RNA-binding repeat profile. 456 491 IPR001313 GO:0003723
Blo01g01504 766 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 185 542 - -
Blo01g01504 766 Gene3D - 225 551 IPR011989 -
Blo01g01504 766 CDD Pumilio 234 543 IPR033712 GO:0003723
Blo01g01504 766 ProSiteProfiles Pumilio RNA-binding repeat profile. 272 307 IPR001313 GO:0003723
Blo01g01504 766 Pfam Pumilio-family RNA binding repeat 388 422 IPR001313 GO:0003723
Blo01g01504 766 Pfam Pumilio-family RNA binding repeat 428 443 IPR001313 GO:0003723
Blo01g01504 766 Pfam Pumilio-family RNA binding repeat 318 347 IPR001313 GO:0003723
Blo01g01504 766 Pfam Pumilio-family RNA binding repeat 460 494 IPR001313 GO:0003723
Blo01g01504 766 Pfam Pumilio-family RNA binding repeat 354 385 IPR001313 GO:0003723
Blo01g01504 766 Pfam Pumilio-family RNA binding repeat 498 519 IPR001313 GO:0003723
Blo01g01504 766 Pfam Pumilio-family RNA binding repeat 276 306 IPR001313 GO:0003723
Blo01g01504 766 Pfam Pumilio-family RNA binding repeat 241 274 IPR001313 GO:0003723
Blo01g01504 766 ProSiteProfiles Pumilio RNA-binding repeat profile. 420 455 IPR001313 GO:0003723
Blo01g01504 766 PANTHER PUMILIO HOMOLOG 15 185 542 - -
Blo01g01504 766 SMART pum_5 456 491 IPR001313 GO:0003723
Blo01g01504 766 SMART pum_5 311 346 IPR001313 GO:0003723
Blo01g01504 766 SMART pum_5 348 383 IPR001313 GO:0003723
Blo01g01504 766 SMART pum_5 384 419 IPR001313 GO:0003723
Blo01g01504 766 SMART pum_5 236 271 IPR001313 GO:0003723
Blo01g01504 766 SMART pum_5 272 307 IPR001313 GO:0003723
Blo01g01504 766 SMART pum_5 494 529 IPR001313 GO:0003723
Blo01g01504 766 SMART pum_5 420 455 IPR001313 GO:0003723
Blo01g01504 766 ProSiteProfiles Pumilio RNA-binding repeat profile. 384 419 IPR001313 GO:0003723
Blo01g01504 766 SUPERFAMILY ARM repeat 234 543 IPR016024 -
Blo01g01504 766 ProSiteProfiles Pumilio RNA-binding repeat profile. 348 383 IPR001313 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01504 - - - zju:107420560 469.159
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g01504 Blo12g00979 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01504 Blo-Chr1:54621951 Blo13g00713 Blo-Chr13:29885149 3.18E-08 dispersed
Blo03g00946 Blo-Chr3:35508049 Blo01g01504 Blo-Chr1:54621951 2.24E-12 transposed
Blo13g00266 Blo-Chr13:12733220 Blo01g01504 Blo-Chr1:54621951 2.38E-89 transposed
Blo01g01504 Blo-Chr1:54621951 Blo12g00979 Blo-Chr12:27829622 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g683 Blo01g01504 Blo12g00979 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0024807 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01504 Blo_Chr01 FPKM 103.509521 116.506027 110.114723 112.308128 110.781532 108.534332 116.647614 110.391937 110.970436 102.894852