Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01516 ATGGCGGCTGCATCCTTGTGGAAACTCACCTCCACTATTTCTCTGAATAGACCCACTTCCGTTTCTCTTCCATGGAGACTCTCCTACCATTCGCGCTTCAATCCTACCATCTTCCCCAAACGCTACGCCAATACTACGCCAGTGGCTACTCTGGATATGAAGCCAACAATCCTCGTCTCCGAGACGCTCAGCGAACCAGCAATCGAACTGCTTAGAAGATTAGCCAACGTCGATTGTTCTTACAATTTGAGTTCGGAAGAACTGTGTGCTAAAATCTCTCTGTGCGACGCTTTGATTGTCTGGAGTGGCACCAAGGTCTCTCGCGAGGTATTTGACTCGTCGGCTGGCCGACTGAAAGTAGTCGGTCGTGCTGGCGTAGGAATTGATAATGTGGATTTATCAGCCGCCACCAAACACGGATGCATAGTCGTGAATGCTTCTACTGCTAGGTTAATATGTTCAACAACCAAACGTAATAATATCATTGCTTTGCTTGCGGCCATGTGTCGTAATATCGCCCAAGCCGATGCTTCTCTCAAAGCTGGGAAGTGGGAGAGGAATAAGTACATTGGAGTGTCCATGGTTGGCAAAACTCTTGCAGTGATAGGCTTTGGAAAAGTTGGATCAGAGGTTGCGAGACGAGCCAAGGGCCTTGGTATGCATGTCATTGCCCACGATCCGTATGCGCCCGAAGACCGAGCTCGAGCCATTGGCATCAGATTGGTGACCTTCGATGAAGCCATATCATTTTCACACTTCATTTCTCTACACATGCCTCTCACCACAACTACATTTCACCTATTCGACGGCGAAGCATTCTCGAAAACGAGAAAAGGCGTTCGAATCGTCAACGTGGCTCGTGGGGGTGTCATCGACGAGGAAGCTCTCGTTAGAGCCCTTGATTCTGGGATTGTTGCCCAGGCAGCATTAGATGTGTTTACTGAAGAGCCTCCGCCGAAAGACCATAAGCTAGTTCATCATGAAAATGTGATTGTAACTCCACACCTGGGTGCTAATACTGTGGAAGCGCAGGAGGAGGTAGCTATTGAGATTGCAGAAACTGTTATTAGTGCATTGAACGGGGAGCTTTCTGGAAATGCTGTAAATGCACCAATGGTTTCTGCTCAGGTTTTATCAGAACTTGTTCCATATCTTGGTCTGGCAGAAAAGCTTGGAAGATTGTGTCTTCAACTGGGTGCGGGTGGAAGTGGAGTAAAAGCAGTGAAGGTATCTTATGGCTCTGCCAGAAATCCAGATAATCTCCCCGCACAACTACTGAGGGCTATGCTCATTAAAGGTCTAGTCGATCCAGGTTCAGGTCTTCCCGTGAACTTGGTTAATGCAGATTTCATTGCAAAACAGAGAGGACTAAGAATAGGAGAAGAGCATATCGTGCTAGACGACTTGCCTGAGCACCCACTCAAGTTTATCCAGGTTCGAATCACGAATGTAGAATCCAATTTCGCCGGAGCAATTTCAGAGCGTGGTGAGATTAAAGTGGAGGGAAGAGTGAAAGATGGGGAACCACATTTGACTAGAGTTGGATCGTTTAGGGTAGATGTGAGCTTGGAAGGTAGCCTCATACTTTGCCGGCAGGTCGATCAACCGGGTACGATCGGAAAAGTAGGAACCATCTTAGGTGACGAGAACGTAAATGTGAGTTTTATGAATGTTAAGAGAACAGGTCCTCAAAAACAAGCTGTCATGATAATATGCGTGGATGAGGAACCCAGCAGAGAAGCTCTGAGAAAAATTGGAGATCTACCCGCCATTGAAGAGTCTGTCTTCATCAAATTATAG 1800 47.06 MAAASLWKLTSTISLNRPTSVSLPWRLSYHSRFNPTIFPKRYANTTPVATLDMKPTILVSETLSEPAIELLRRLANVDCSYNLSSEELCAKISLCDALIVWSGTKVSREVFDSSAGRLKVVGRAGVGIDNVDLSAATKHGCIVVNASTARLICSTTKRNNIIALLAAMCRNIAQADASLKAGKWERNKYIGVSMVGKTLAVIGFGKVGSEVARRAKGLGMHVIAHDPYAPEDRARAIGIRLVTFDEAISFSHFISLHMPLTTTTFHLFDGEAFSKTRKGVRIVNVARGGVIDEEALVRALDSGIVAQAALDVFTEEPPPKDHKLVHHENVIVTPHLGANTVEAQEEVAIEIAETVISALNGELSGNAVNAPMVSAQVLSELVPYLGLAEKLGRLCLQLGAGGSGVKAVKVSYGSARNPDNLPAQLLRAMLIKGLVDPGSGLPVNLVNADFIAKQRGLRIGEEHIVLDDLPEHPLKFIQVRITNVESNFAGAISERGEIKVEGRVKDGEPHLTRVGSFRVDVSLEGSLILCRQVDQPGTIGKVGTILGDENVNVSFMNVKRTGPQKQAVMIICVDEEPSREALRKIGDLPAIEESVFIKL 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54727654 54731915 + BLOR01516 Blo01g01516 55956

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01516 599 ProSiteProfiles ACT domain profile. 527 599 IPR002912 -
Blo01g01516 599 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 54 186 - -
Blo01g01516 599 CDD PGDH_4 57 362 - -
Blo01g01516 599 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 57 369 IPR006139 GO:0016616|GO:0051287
Blo01g01516 599 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 161 338 IPR036291 -
Blo01g01516 599 Pfam ACT domain 528 589 IPR002912 -
Blo01g01516 599 TIGRFAM PGDH: phosphoglycerate dehydrogenase 57 599 IPR006236 GO:0004617|GO:0006564
Blo01g01516 599 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 162 337 IPR006140 GO:0051287
Blo01g01516 599 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 276 292 IPR029753 -
Blo01g01516 599 Gene3D - 526 599 - -
Blo01g01516 599 CDD ACT_3PGDH-xct 527 599 - -
Blo01g01516 599 Gene3D - 60 362 - -
Blo01g01516 599 SUPERFAMILY ACT-like 517 592 IPR045865 -
Blo01g01516 599 SUPERFAMILY Serine metabolism enzymes domain 375 521 IPR029009 -
Blo01g01516 599 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 199 226 IPR029752 -
Blo01g01516 599 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 247 269 IPR029753 -
Blo01g01516 599 Gene3D - 153 335 - -
Blo01g01516 599 PANTHER D-3-PHOSPHOGLYCERATE DEHYDROGENASE 44 594 - -
Blo01g01516 599 Gene3D - 366 525 IPR029009 -
Blo01g01516 599 Pfam D-3-phosphoglycerate dehydrogenase intervening domain 381 499 IPR045626 -
Blo01g01516 599 PANTHER FORMATE DEHYDROGENASE 1 44 594 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01516 K00058 serA, PHGDH; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] - nnu:104588138 795.038
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g01516 Blo17g00896 CCT
Blo01g01516 Blo17g00896 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01516 Blo-Chr1:54727654 Blo02g00840 Blo-Chr2:31014514 0 dispersed
Blo01g01516 Blo-Chr1:54727654 Blo17g00333 Blo-Chr17:3467317 2.73E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g717 Blo01g01516 . Bda01g00578 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag1109 Cone3ag0997 Cone10ag1017 . . . . Blo17g00896 . . . . Bpe05g00377 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001181 3 2 4 3 3 1 4 2 2 2 2 2 3 2 2 4 2 6 4 2 2 2 3 2 2 2 2 3 2 3 78
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01516 Blo_Chr01 FPKM 0.0 0.0 0.0 0.249481 0.0 0.0 0.172022 0.575787 0.753968 0.500954