Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01521 ATGGAGGGAGAGTGTTATTCGAGAGTTTCTTCTTCGTCGTCTTCAACCTCCAGCACAGAGCAGAAGCGAAAGCAGAGGCAGCTGCTCCGAGAGCTCAAGCCCTACAGAGGAATTAGGATGCGCAAGTGGGGAAAGTGGGTAGCGGAGATTAGAGAGCCAAATAAAAGGTCTAGGATTTGGCTGGGTTCTTACGTTACCCCCGTCGCCGCCGCTCGTGCCTACGACACCGCCGTCTTCTACCTCCGGGGACCCTCCGCCCGCTTGAATTTTCCGGAGCTCATCTTCCGAGAAGAGCAGCCGCAAGATTTGTCCGCCGCTTCTATACGCAAAATAGCCACCGAAGTTGGGGCTAGAGTCGACGCCGTTCAAAGAGCTCTTCTTTCGTCGACCTCCGTTTCTACTCAGCTACCGGAAAAGCCTGATTTGAACCAGTTTCCAAGCCCCGAAACTTCCGACGAAGATTGA 465 53.98 MEGECYSRVSSSSSSTSSTEQKRKQRQLLRELKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYVTPVAAARAYDTAVFYLRGPSARLNFPELIFREEQPQDLSAASIRKIATEVGARVDAVQRALLSSTSVSTQLPEKPDLNQFPSPETSDED 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54799376 54799840 + BLOR01521 Blo01g01521 55961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01521 154 MobiDBLite consensus disorder prediction 130 147 - -
Blo01g01521 154 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Blo01g01521 154 PRINTS Ethylene responsive element binding protein signature 73 93 IPR001471 GO:0003700|GO:0006355
Blo01g01521 154 SUPERFAMILY DNA-binding domain 34 92 IPR016177 GO:0003677
Blo01g01521 154 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 10 152 - -
Blo01g01521 154 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 10 152 - -
Blo01g01521 154 Gene3D AP2/ERF domain 34 92 IPR036955 GO:0003700|GO:0006355
Blo01g01521 154 MobiDBLite consensus disorder prediction 1 26 - -
Blo01g01521 154 PIRSF PTI6 4 151 IPR017392 GO:0003700
Blo01g01521 154 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Blo01g01521 154 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Blo01g01521 154 MobiDBLite consensus disorder prediction 1 22 - -
Blo01g01521 154 CDD AP2 35 93 IPR001471 GO:0003700|GO:0006355
Blo01g01521 154 Pfam AP2 domain 35 83 IPR001471 GO:0003700|GO:0006355
Blo01g01521 154 MobiDBLite consensus disorder prediction 130 154 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01521 Blo-Chr1:54799376 Blo12g00963 Blo-Chr12:27757652 3.04E-85 dispersed
Blo18g00657 Blo-Chr18:12325563 Blo01g01521 Blo-Chr1:54799376 3.62E-73 transposed
Blo01g01521 Blo-Chr1:54799376 Blo12g00962 Blo-Chr12:27752920 2.29E-84 wgd
Blo01g01521 Blo-Chr1:54799376 Blo04g01061 Blo-Chr4:15228463 6.91E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11929 PF00847 AP2 6.50E-11 CL0081 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01521 K09286 - csv:101219005 212.616