Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01536 ATGCAGTCGAGCGGCTCTGATTCGCAGACGGCGCAGCAGCTGGAGCAGAATCAAAGGCAACAATCACAACCGCCGCCGCAGCAGCCGTGGATGGCGATGCAGTATCCTGCCACGGCGATGGTAATGCAGCACCAGATGATGCCTCCTCAGCATTACCTTCCCTCGATACCGCCGCACTACATGCCATACCATCAGTATCAGCCGCATCATCCGCTTATGCAACAAGGTCAGCAGCATCACCAGGGATCTTCAGGCGAGAACAAGACGATATGGGTCGGCGATTTGCACCATTGGATGGACGAGAATTACCTCCATACTTGCTTCATATCTACTGGAGAGGCTTTCCCGAAATTGATTAAAAGTTATAAAAGTGGTAACTTTGCCATTAGTGATTTGAGACGAGTCATTTCTTCCATTAAGGTTATTCGAAATAAGCAGACAGGTTTATCAGAAGGCTATGGATTTGTGGAATTTTATTCCCACGCAACTGCCGAGAAAGTTCTACAGAACTACAGTAGCATATTTATGCCAAACACAGAACAACTTTTCCGCCTTAACTGGGCAACATTTAGCTCAGGAGAAAAGCGTTTAGATAATGGTCCTGATCTTTCTATCTTTGTAGGAGATTTAGCTGCAGATGTTACTGATAGTTTATTGCATGAAACTTTTGCCAGTAGATTTCCATCAGTTAAGGCTGCAAAAGTTGTGTTTGATGCCAACACTGGTCGTTCAAAGGGTTATGGTTTTGTGAGGTTTGGGGACGATAATGAGAGATCACAGGCCATGACAGAGATGAATGGTGCTTATTGTTCAAGCAGACCTATGCGGATTGGTGCAGCAACGCCTAGGAAGTCCTCTGGATACCATCAGCAATTTTCTTCCCAAGGTATAATGTACTATACATCTATAATAATTATATTTGTTGGAGGGCTTGATCCTAATGTCAGTGATGAAGACCTTAAGCAGCCTTTCTCTCAGTATGGCGAGATTGTCTCTGTTAAAATACCAGTTGGAAAAGGATGTGGGTTTGTGCAATTTGCCAACAGAAATAATGCCGAGGAAGCTTTACAGAAATTAAATGGAACTGTAATTGGGAAGCAAACTGTACGACTTTCTTGGGGTCGGAACCCGGCAAACAAGCAGCAGTTCAGAGGTGATTTTGGCAACCAGTGGAGTGGAGCATACTACGGAGGCCAGGTTTATGATGGATATGGATATGCTATGGCTTCCCCTCACGATCCGGGCATGTATGCTACATCTGCCGCAACCTATGGAGCGTACCCTTTCTATGGAACCCATCAACAGCAAATTCGCCTCTCCTTACTCTACTCTACTTCCATGGTCGACAAAAGCCACCCGTTAAGCAGCGATAGAGGTGAATTTTTAACAGATGAGGAACTTGGACTGATCGAAGATTTTCCCGAAGTAGAAGAGCATACAGAGAGAAATATTGAATATGTCAATGATGGCCAAATGTGCAGGGTTAGTGTAAAAAGGAAGGAGAAGAAAAGGAAAGAAAAGAAGGGGGGAAAAGGAGAGAGCATGGATAAGATGGACAGTGGACACTGGGTCTGGGTTATATATTTGCAGTATGTTGTGGTTCGCTCTTTTGCAGACCCCCTCTTTCTCTCTCTCTTCCCACTCTTCTCTCTTTCTCTCTCTAAAAGGTGGAAGAGACGCACAGCTAGTAACCCGCTTCACAGTGTTCATTGCAGAAGCGAAATTCTCACGCTGGTGCTGATTTCGACGCCGTGTAGAGAATTTGTTATCCGGGTTTGGGATCAGGTGGAGATTTTGGAGACTAAGGTGGGGGATGGCACTGCAAAAGCAACGACAAGTGGACGAGTTTCAAGAAGAGAGAGAAAAATTGCTCTGCAGAAAGACATTGATAAGCTGAAGAAGAAGCTGAGACAAGAAGAGAATGTACAGAGAGCCCTGAAGAGGGCCTTCACCAGACCTTTGGGAGCTTTACCTCGTCTCCCTTCTTTCCTCCCTCCTCATATGCTCGAGCTTCTTGCAGAAGTAGCCGTTTTGGAGGAGGAGATAGTTCGACTCGAGCAGCAGGTTGTTCACTTTAGGAAAAACTTGTATTGTGAAGCTGTCTTTATGTCATCTTCAACAAAGATGAAAGACAATTCATCTGATTCACGTGAGCCTAAACAAGTAGAGTCCAAGCTTTTAGTTCAGAATTCCGCCATTTCTACGACAAATTCACCTTCTGTGTCTGATGATTCCCTAGGGAAGGAGAATCAATGTCGTGCAAATTCGACCAAGAACAACAGAGAATCCACGGCTCCAAGGCTTCATACAGTCGGAATTAGTGGAAAGAAACCTCCTCTTAATTATACATCAGCAATTAAGAATTTGAACACTAATAAGCTAGATTCAGAATGGGTGACAGAACAAGAAGATACAGATGCAAAAAGATGCATCATTCCCTCCCGAGATGACTGTCCAAACAAGTTATCTGAAGAGATTTTGAAGTGCTTATCAAGCATTCTTTTAAGGCTGTCTTCGTCGAAAAACAAAGGCGCTTTGCCGACGACAACCAACCAAGTTGGCTGCCAAGAAGCAAAATATCACGATCCTTACGGAATTTTATCAAAATTTGGATCGAGAGATATCGGCCCTTACAGGAATTTATGCGTGGTAGAATCTCGATCGATCAATCGACATCGAACAGCAAGTTGTATGTTTTTATTTCGCAGATTGAGACTGCTCCTTCAGAAACTTGCTTCAGCCAATTTAAAAAATCTCACCCATCAGGAAAAGCTTGCATTCTGGATTAACATCCACAACTCCTGCATGATGAATGCATATCTAGAACATGGAATTCCAGAAACTCCTGAGAGGGTCATTGTACTGATGCAGAAGGGAACAGTTTTAGTGGGTGGACACTTGCTGAATGCTATAACCATTGAACATTTCATCTTGAGACTACCATATCATTCACAATACACCTTTTCAGGGAGTGCAAAAAATGATGAGAAGACAATAAGAAGCCTGTTTGGACTGGAATTATCTGAACCATTGGTCACATTTGCTCTGTCCTGTGGGAGCTGGTCCTCTCCCGCTGTGAGAGTGTATACTGCGTCTGAGGTAGAGAACGAACTGCAAGTAGCCAAGAGAGACTACCTGCAGGCGGCAGTTGGGATTTCACCGGAGAAATTCGGAGTTCCGAAGATGTTGGAATGGCATTTGCTTGATTTTGCAAAGGATTTAGAGTCATTGCTTGATTGGTTGTGCCTCCAATTACCAAACGAACTCGAAAAAGAAGCCATCTCATGCATCGAAAACGGAGGTAAAAACGACCCTCTTTTTCTCTCGCAGTTTGTGGAACCGCTGGAGAGAATTGACGTGCAAAACAAGTGGGGTGGTCCAGCTTTGGATGGGGCACCTGCCATAGCCATGTTGGGGCGTAAGAACAAAGCTCTTAACCTAAAACCAGAGAGTGACTCTCCACAAACTTAA 3471 44.28 MQSSGSDSQTAQQLEQNQRQQSQPPPQQPWMAMQYPATAMVMQHQMMPPQHYLPSIPPHYMPYHQYQPHHPLMQQGQQHHQGSSGENKTIWVGDLHHWMDENYLHTCFISTGEAFPKLIKSYKSGNFAISDLRRVISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYSSIFMPNTEQLFRLNWATFSSGEKRLDNGPDLSIFVGDLAADVTDSLLHETFASRFPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGAYCSSRPMRIGAATPRKSSGYHQQFSSQGIMYYTSIIIIFVGGLDPNVSDEDLKQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTVIGKQTVRLSWGRNPANKQQFRGDFGNQWSGAYYGGQVYDGYGYAMASPHDPGMYATSAATYGAYPFYGTHQQQIRLSLLYSTSMVDKSHPLSSDRGEFLTDEELGLIEDFPEVEEHTERNIEYVNDGQMCRVSVKRKEKKRKEKKGGKGESMDKMDSGHWVWVIYLQYVVVRSFADPLFLSLFPLFSLSLSKRWKRRTASNPLHSVHCRSEILTLVLISTPCREFVIRVWDQVEILETKVGDGTAKATTSGRVSRRERKIALQKDIDKLKKKLRQEENVQRALKRAFTRPLGALPRLPSFLPPHMLELLAEVAVLEEEIVRLEQQVVHFRKNLYCEAVFMSSSTKMKDNSSDSREPKQVESKLLVQNSAISTTNSPSVSDDSLGKENQCRANSTKNNRESTAPRLHTVGISGKKPPLNYTSAIKNLNTNKLDSEWVTEQEDTDAKRCIIPSRDDCPNKLSEEILKCLSSILLRLSSSKNKGALPTTTNQVGCQEAKYHDPYGILSKFGSRDIGPYRNLCVVESRSINRHRTASCMFLFRRLRLLLQKLASANLKNLTHQEKLAFWINIHNSCMMNAYLEHGIPETPERVIVLMQKGTVLVGGHLLNAITIEHFILRLPYHSQYTFSGSAKNDEKTIRSLFGLELSEPLVTFALSCGSWSSPAVRVYTASEVENELQVAKRDYLQAAVGISPEKFGVPKMLEWHLLDFAKDLESLLDWLCLQLPNELEKEAISCIENGGKNDPLFLSQFVEPLERIDVQNKWGGPALDGAPAIAMLGRKNKALNLKPESDSPQT 1156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54951740 54967254 + BLOR01536 Blo01g01536 55976

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01536 1156 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 275 IPR000504 GO:0003723
Blo01g01536 1156 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 306 369 IPR000504 GO:0003723
Blo01g01536 1156 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 136 180 IPR000504 GO:0003723
Blo01g01536 1156 MobiDBLite consensus disorder prediction 1 30 - -
Blo01g01536 1156 Coils Coil 668 695 - -
Blo01g01536 1156 Gene3D - 304 409 IPR012677 -
Blo01g01536 1156 MobiDBLite consensus disorder prediction 730 774 - -
Blo01g01536 1156 PANTHER TERNARY COMPLEX FACTOR MIP1, LEUCINE-ZIPPER-RELATED 604 731 - -
Blo01g01536 1156 MobiDBLite consensus disorder prediction 1 28 - -
Blo01g01536 1156 MobiDBLite consensus disorder prediction 730 767 - -
Blo01g01536 1156 Gene3D - 202 278 IPR012677 -
Blo01g01536 1156 CDD RRM1_SECp43_like 89 191 - -
Blo01g01536 1156 Pfam Leucine-zipper of ternary complex factor MIP1 618 697 IPR025757 -
Blo01g01536 1156 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 282 IPR000504 GO:0003723
Blo01g01536 1156 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 304 376 IPR000504 GO:0003723
Blo01g01536 1156 CDD RRM3_NGR1_NAM8_like 306 374 - -
Blo01g01536 1156 SMART rrm1_1 204 278 IPR000504 GO:0003723
Blo01g01536 1156 SMART rrm1_1 305 372 IPR000504 GO:0003723
Blo01g01536 1156 SMART rrm1_1 89 183 IPR000504 GO:0003723
Blo01g01536 1156 Gene3D - 87 189 IPR012677 -
Blo01g01536 1156 PANTHER TERNARY COMPLEX FACTOR MIP1, LEUCINE-ZIPPER-RELATED 734 1112 - -
Blo01g01536 1156 SUPERFAMILY RNA-binding domain, RBD 202 378 IPR035979 GO:0003676
Blo01g01536 1156 Pfam Protein of unknown function, DUF547 917 1046 IPR006869 -
Blo01g01536 1156 Coils Coil 622 649 - -
Blo01g01536 1156 PANTHER EXPRESSED PROTEIN 734 1112 - -
Blo01g01536 1156 PANTHER EXPRESSED PROTEIN 604 731 - -
Blo01g01536 1156 CDD RRM2_SECp43_like 202 281 - -
Blo01g01536 1156 SUPERFAMILY RNA-binding domain, RBD 57 189 IPR035979 GO:0003676
Blo01g01536 1156 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 190 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01536 - - - cit:102622145 633.639
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01536 Blo-Chr1:54951740 Blo14g00281 Blo-Chr14:2796067 2.00E-123 dispersed
Blo13g01056 Blo-Chr13:32833353 Blo01g01536 Blo-Chr1:54951740 1.60E-11 dispersed
Blo19g00272 Blo-Chr19:16128138 Blo01g01536 Blo-Chr1:54951740 6.22E-29 dispersed
Blo06g00243 Blo-Chr6:12414664 Blo01g01536 Blo-Chr1:54951740 3.59E-112 transposed
Blo01g01536 Blo-Chr1:54951740 Blo12g00945 Blo-Chr12:27591699 2.57E-40 wgd
Blo01g01536 Blo-Chr1:54951740 Blo04g01042 Blo-Chr4:14395789 1.51E-44 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g813 Blo01g01536 . Bda01g00562 . . . Bma04g00177 Bma01g02286 . Cmo12g00459 Cma01g01860 Cma09g00213 Car01g01448 . Sed01g0343 Cpe06g00147 Cpe07g00462 Bhi04g00313 Tan02g1894 Cmetu05g1832 . Hepe10g0703 . Lcy13g2033 . . . . . . . Cone4ag1559 Cone7ag1392 . . Lsi04g01583 Csa04g02386 . Cme03g02008 . . . . . . . . Sed01g2645 Cmo01g01919 Cmo09g00205 Cma12g00518 . . Car09g00180 . Cpe02g00165 Bhi09g03353 Tan01g4821 Cmetu11g2597 . Hepe01g1741 Mch11g0266 . Cla05g02019 Cam05g2169 Cec05g2185 Cco05g2233 Clacu05g2162 Cmu05g2030 Cre05g2158 Lsi08g01446 Csa02g01994 Chy07g00112 Cme04g00689
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007331 0 4 1 0 1 1 3 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01536 Blo_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0