Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01537 ATGGACAGCTCCGCCGTTTTCTCACTGCTCCGCCATAAAATGGGCGAAAACAAGCGGGCAAAATCCAGTGGAGGGCTTCTGAAAATGCTGAAGCTCTTCCCCATGTTAACCTCGGGGTGCAAAATGGTGGCATTGTTAGGAAGACCCAGAAAGCCCCTGCTTAAAGACAGCGCCACTACTGGCACCATTTTCGGCTACCGGAAAGGACGAGTAAGCTTAGCGATACAGGAAGACCCCCATTGCTTACCCATATTCGTGATCGAGCTGCCGATTTACACCAACGCTTTGCATAAAGAAATGGCGTCTGATATAGTCAGAATCGCTTTAGAGAGCGAAACGAAGACTCATAAAAAGAAGGTTTTAGAGGAGTTCGTCTGGGCTGTTTACTGTAACGGAAGAAAAATAGGCTACTCAATAAGAAGGAAGGCTATGTCCGATGATGAGCTTCACGTGATGCAGCTTTTGAGAGGCGTTTCAATGGGTGCAGGAGTTCTTCCGTCGCCGTCCCCGCCGGAGAAAGATTCACTCGACGGCGAGATGACTTATCTACGAGCTAGGTTCGATCGGGTCATTGGGTCGAAGGATTCTGAAGCGTTTTATATGATAAATCCAGACGGAGCGACGGGGACTGAACTGAGTATTTTCTTTGTTCGGTCTAAATGA 663 48.27 MDSSAVFSLLRHKMGENKRAKSSGGLLKMLKLFPMLTSGCKMVALLGRPRKPLLKDSATTGTIFGYRKGRVSLAIQEDPHCLPIFVIELPIYTNALHKEMASDIVRIALESETKTHKKKVLEEFVWAVYCNGRKIGYSIRRKAMSDDELHVMQLLRGVSMGAGVLPSPSPPEKDSLDGEMTYLRARFDRVIGSKDSEAFYMINPDGATGTELSIFFVRSK 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54971523 54972185 + BLOR01537 Blo01g01537 55977

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01537 220 PANTHER PROTEIN MIZU-KUSSEI 1 1 219 IPR006460 GO:0010274
Blo01g01537 220 PANTHER - 1 219 - -
Blo01g01537 220 TIGRFAM A_thal_3588: uncharacterized plant-specific domain TIGR01570 59 219 IPR006460 GO:0010274
Blo01g01537 220 Pfam Protein of unknown function, DUF617 60 218 IPR006460 GO:0010274
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01537 - - - rcu:8260871 369.392
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g01537 Blo12g00944 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01537 Blo-Chr1:54971523 Blo16g00495 Blo-Chr16:19731972 3.20E-64 dispersed
Blo16g00305 Blo-Chr16:7456592 Blo01g01537 Blo-Chr1:54971523 8.32E-38 transposed
Blo01g01537 Blo-Chr1:54971523 Blo12g00944 Blo-Chr12:27587512 5.13E-146 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g821 Blo01g01537 Blo12g00944 Bda01g00560 Bda03g00226 Bpe02g00420 Bpe04g00193 Bma04g00178 Bma01g02287 . Cmo12g00457 Cma01g01867 Cma09g00209 Car01g01455 Car12g00488 . Cpe06g00143 Cpe07g00460 Bhi04g00310 . . . Hepe08g1236 . Lcy13g2031 Cla08g01538 Cam08g2034 Cec08g1609 Cco08g1744 Clacu08g1721 . Cre08g1504 Cone4ag1556 Cone7ag1396 Cone17ag1298 Cone20ag0172 Lsi04g01592 Csa04g02378 . Cme03g02006 . . . . . . . . . Cmo01g01925 Cmo09g00201 Cma12g00517 . . Car09g00175 . Cpe02g00160 Bhi09g03366 . . . Hepe01g1734 Mch11g0261 . Cla05g02004 Cam05g2155 Cec05g2173 Cco05g2220 Clacu05g2147 Cmu05g2017 Cre05g2143 Lsi08g01444 Csa02g01998 Chy07g00106 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007706 2 1 2 2 2 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 0 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01537 Blo_Chr01 FPKM 14.811581 15.053155 28.168179 27.489002 9.847669 12.287852 10.885966 58.11261 62.374496 63.456097