Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01542 ATGTGGACGACCTGCGGACGGGATATCACGCCTGTAAACGCTTGGGATGATATGAGGACAAGGTTTCGCATCCTGATCACTTCAGACGGAACCGGCCTGGTACCGAAGAATCGGACAGGTACCGGTCCTTTCGGTACCGGGTTGGTCTGTGTAAATGGAGTATCAGACCGGAGCCGGTCCGACACTATCGGGACCGGTTCTACACGCTCCGAGCTCCGACCTCTGTCCGTCGCCACTGCCACTGCCACTGCCACTGCCACTGCCATCTTGTGTATTGCTTGTGTTTATTTACTTATTTCAGAAGGTGATATTTTTGCTGATAGTGATCTACAGATCGAGGAGGAGGTGTTCCAAGATGATCCCTTGGGTTATCAGCCGGTTATCAGCCGAATGACGTGTTGGTTGTGGCTCACTGGATGTTGGGGAGAGATTAGGAGTCTGGCTTGCAGTATTTCCCACGGTTTATATATCGCCGGAGCTGCCACGGCAATGATCCTCATCGGAGGAGAGACCATGAAATCTTTTAACCACGGTAGAGTGGCCTTAGGCTGCTTCTTCCTTCTCTCTCTTCTTCTTTATTCTTCTTCTTCTTCCTCTTTCGCCCGTAAGGACGAGGAAGCTTCTTCCATTGTTAGTCGTCAGCTTCTTACCTTGGGTGAGGGTGACGATTTGCCAGATAATTTCGACTTCACCTTTGCTGCGAATGTGACTTGTGCAAACTTCAGGCTTAGAAAAGCTTACATTGCCCTGCAAGAATGGAAGAAGGCCATCTTCTCTGACCCTTTTAACATTACCGGAAATTGGGTTGGAGGTGATGTTTGCTCTTACAATGGAGTTTTCTGCGCACCTTCTATTGAAGATCCTAACCTCACCGTCGTCGCCGGAATCGATGTCAACGGCGCGGACATCGCCGGTAGTCTTCCAGTTGAGTTGGGTCTATTGACTGATATCGCATTGTTTCACATTAACTCCAACAGGTTTTGTGGAGTTATTCCGAAAAGCTTCTACAGGCTTAAGCTTCTCTACGAACTCGACGTCAGCAACAACCGTTTCGTCGGACCTTTCCCGACCGTGGTCCTTTCTATTCCAAAGCTCAATTATCTTGATTTGAGGTACAATAACTTCGAGGGTGAATTGCCGCCGGAGCTTTTTGAGAAGGAACTCGACGCAATTTTCTTGAACGACAACAGGTTCACATCCACTCTTCCGGAAAACTTCGGAAACTCTCCGGCTTCCGTTGTCGTCGTTGCAAACAACCAACTGAAGGGATGCATTCCGAAGAGCATCGGAAAAATGAAGGACTCCCTCGATGAGATTATATTCATGAACAACAGTATCGGAGGATGTTTGCCGTCAGAGATTGGATTGCTCGGGAACTTGACGGTTTTTGATATTGCATCGAACTCCTTCACCGGAATCTTGCCCAAGACCTTTTCAGGCCTTGGAAAAATTGAGCATTTGGATATTTCTCATAATGTTTTGACTGGCTTTATTCCTGAGAGTCTCTGCAAATTGCCAGGATTGGGTAACTTCACATACTCCTTCAACTTCTTCAATGGCGCCGCAGATGAATGCGGAGCCTCGTTGAAGAGGAATGTTGCGTTTGACGATAGCAGTAACTGCTTACCGGAGAGGCCGAAGCAGAGGGGTGAGCAAATTTGCAGTGAAGTAGTCAACAAGCCGGTGGATTGCACTAAAGCAAAATGTGGAGGAGGAGGAGGAGGATCGCCCCCTTCTTCAAAGGCTCCAAACCCGCAGCCAACGCCGTCTCAGTCTGACCCACCTAAACAACAATCACCGGTTGTCCCACCAGAAACGCAACCGGACCACCCAGGATTTCCTCCAATGGAAGATGAATCTCCGATCCCTGGACCAGTTCCGTCTCCATCGCCCACAAGCCAATCTCCAATTCTAAGACCGTCAAGGCCTAGTTCAAACCCTCCGGCTCCCACGCCCCAATATCCACCGGAGTCTTATCCTCCGACGACAATTTCACCTTCACCAACCGACGACCCATATGATCAATCGCCATTCATGGGGCGCCGATCTCCGCCACCTGGGACATATACTCCCCCTCCAGTTCAATCTCCGTTGTCACCAGACCAATCTCCGTTGCGTCGTTGTTCTTCTGATTTTAAACCAATTTTGTCGCTGAACTGCGATGATTCGGACGGGTGCGGATGGTATCTTCGCGTCCGCAAGACCAGATCTTCCCAGGTAAAAGCCGAGTTCGGACGAAAATTGGCGTCCTTACCCCTTGTCCGTACTGTCCACAGGCAACTTGCAGACGCGATAGCTCGTCCGCAGGTGGCGTCCCCAGTCGTTCGAATTGTCCCCAAATTTGGCCAGAATTGA 2355 49.81 MWTTCGRDITPVNAWDDMRTRFRILITSDGTGLVPKNRTGTGPFGTGLVCVNGVSDRSRSDTIGTGSTRSELRPLSVATATATATATAILCIACVYLLISEGDIFADSDLQIEEEVFQDDPLGYQPVISRMTCWLWLTGCWGEIRSLACSISHGLYIAGAATAMILIGGETMKSFNHGRVALGCFFLLSLLLYSSSSSSFARKDEEASSIVSRQLLTLGEGDDLPDNFDFTFAANVTCANFRLRKAYIALQEWKKAIFSDPFNITGNWVGGDVCSYNGVFCAPSIEDPNLTVVAGIDVNGADIAGSLPVELGLLTDIALFHINSNRFCGVIPKSFYRLKLLYELDVSNNRFVGPFPTVVLSIPKLNYLDLRYNNFEGELPPELFEKELDAIFLNDNRFTSTLPENFGNSPASVVVVANNQLKGCIPKSIGKMKDSLDEIIFMNNSIGGCLPSEIGLLGNLTVFDIASNSFTGILPKTFSGLGKIEHLDISHNVLTGFIPESLCKLPGLGNFTYSFNFFNGAADECGASLKRNVAFDDSSNCLPERPKQRGEQICSEVVNKPVDCTKAKCGGGGGGSPPSSKAPNPQPTPSQSDPPKQQSPVVPPETQPDHPGFPPMEDESPIPGPVPSPSPTSQSPILRPSRPSSNPPAPTPQYPPESYPPTTISPSPTDDPYDQSPFMGRRSPPPGTYTPPPVQSPLSPDQSPLRRCSSDFKPILSLNCDDSDGCGWYLRVRKTRSSQVKAEFGRKLASLPLVRTVHRQLADAIARPQVASPVVRIVPKFGQN 784
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55024229 55039764 + BLOR01542 Blo01g01542 55982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01542 784 MobiDBLite consensus disorder prediction 569 707 - -
Blo01g01542 784 Pfam Leucine rich repeat 459 508 IPR001611 GO:0005515
Blo01g01542 784 MobiDBLite consensus disorder prediction 580 667 - -
Blo01g01542 784 Pfam Leucine rich repeat N-terminal domain 249 281 IPR013210 -
Blo01g01542 784 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 180 704 - -
Blo01g01542 784 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 2 180 704 - -
Blo01g01542 784 Gene3D Ribonuclease Inhibitor 246 545 IPR032675 -
Blo01g01542 784 MobiDBLite consensus disorder prediction 684 699 - -
Blo01g01542 784 SUPERFAMILY L domain-like 248 541 - -
Blo01g01542 784 SMART LRR_typ_2 362 386 IPR003591 -
Blo01g01542 784 SMART LRR_typ_2 481 505 IPR003591 -
Blo01g01542 784 SMART LRR_typ_2 457 480 IPR003591 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01542 Blo-Chr1:55024229 Blo12g01092 Blo-Chr12:28596716 6.80E-112 dispersed
Blo02g00837 Blo-Chr2:30721586 Blo01g01542 Blo-Chr1:55024229 2.84E-86 transposed
Blo04g00475 Blo-Chr4:3926819 Blo01g01542 Blo-Chr1:55024229 2.43E-83 transposed
Blo08g00216 Blo-Chr8:2536960 Blo01g01542 Blo-Chr1:55024229 1.51E-08 transposed
Blo18g00704 Blo-Chr18:16011048 Blo01g01542 Blo-Chr1:55024229 2.22E-77 transposed
Blo01g01542 Blo-Chr1:55024229 Blo12g00939 Blo-Chr12:27545575 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01542 - - vri:117911401 545.428